CV885169

Overview
NameCV885169
Unique NameCV885169
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length897
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885169 vs. ExPASy Swiss-Prot
Match: FADA_PSEOL (3-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans GN=fadA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 7.893e-45
Identity = 107/238 (44.96%), Postives = 143/238 (60.08%), Query Frame = -1
Query:  196 GVTRQEQDLXXXXXXXXXXXXXXSGKFKDEIIPVNTKIVDPKTGVEKRVTISV---DDGIRPNTTIADLAKLKPAFK-KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLG-LD--PEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 888
            G+TR++QDL               GKFKDEIIP+         G ++   + V   D+ IRP TT+  LA LKPAF  K GT TAG +SQ++DGA  +++M    A+  G+  L V RS +  GVDP++MG GP  +   A+K AGL + DI+  E+NEAFA+Q +  +K L  LD   EKVN++GGA+ALGHP G +GAR   TLL+ MK+ G     GV +MC+G G G   VFER
Sbjct:  163 GITREQQDLFGLRSHQLAHKATVEGKFKDEIIPMQ--------GYDENGFLKVFDFDETIRPETTLEGLASLKPAFNPKGGTVTAGTSSQITDGASCMVVMSGQRAMDLGIQPLAVIRSMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFIELNEAFAAQALPVLKDLKVLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TLGVATMCVGLGQGITTVFER 390          
BLAST of CV885169 vs. ExPASy Swiss-Prot
Match: THIL_THIVI (Acetyl-CoA acetyltransferase OS=Thiocystis violacea GN=phbA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.346e-44
Identity = 101/234 (43.16%), Postives = 142/234 (60.68%), Query Frame = -1
Query:  196 QRFGVTRQEQDLXXXXXXXXXXXXXXSGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 897
            +++  TR+ QD               SG+F DEIIPV+   +  + G    +    D+  RP TT   L +L+PAF K GT TAGNAS ++DGA  V++MK S A + GL  +    +FS+ GVDP++MG GP  A    +K AG    D++L E NEAFA+Q +   +++G D  KVNVNGGA+A+GHP+GA+GAR + TLL EM++R  D + G+ ++CIG G G A   ER
Sbjct:  167 KKYAFTREAQDAFAAASQQKAEAAIQSGRFADEIIPVS---IPQRKG--DPLVFDTDEFPRPGTTAETLGRLRPAFDKQGTVTAGNASGINDGAAMVVVMKESKAKELGLTPMARLVAFSSAGVDPAIMGTGPIPASTDCLKKAGWAPADLDLVEANEAFAAQAMSVNQEMGWDLSKVNVNGGAIAIGHPIGASGARVLVTLLYEMQKR--DAKKGLATLCIGGGQGVALAVER 393          
BLAST of CV885169 vs. ExPASy Swiss-Prot
Match: FADA_VIBPA (3-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus GN=fadA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.346e-44
Identity = 101/235 (42.98%), Postives = 141/235 (60.00%), Query Frame = -1
Query:  196 GVTRQEQDLXXXXXXXXXXXXXXSGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKK-DGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 888
            G++R++QD                G+FK+EI+P      D          +  D+ IRP TT+  L++L+P F   +GT TAG +S +SDGA A+L+M    A + GL I    +  +  G DPS+MG GP  A   A+K AGL I+D+++ E+NEAFA+Q + C K LGL     EKVN+NGGA+ALGHPLG +GAR   TL++ M+   KD ++G+ +MCIG G G A VFER
Sbjct:  163 GISREQQDEFAARSHARAHAATLEGRFKNEILPTEGHAADGTL-----FQLDYDEVIRPETTVEGLSQLRPVFDPANGTVTAGTSSALSDGASAMLIMSEEKANELGLKIRARIKGMAIAGCDPSIMGYGPVPATQKALKRAGLAIEDMDVVELNEAFAAQSLPCAKDLGLLEVMDEKVNLNGGAIALGHPLGCSGARISTTLINLME--AKDAKYGLATMCIGLGQGIATVFER 390          
BLAST of CV885169 vs. ExPASy Swiss-Prot
Match: FADA_MARAV (3-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=fadA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.758e-44
Identity = 104/235 (44.26%), Postives = 144/235 (61.28%), Query Frame = -1
Query:  196 GVTRQEQDLXXXXXXXXXXXXXXSGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK-KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKK---LGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 888
            G+TR++QD                G+FK+EI+P+       + G  K   I  D+ IRP TT   L +L+PAF  K+GT TAG +SQ++DGA A++LM    A   GL  +   RS +  G DP++MG GP  A   A+K AGL+++DI+ +E+NEAFA Q +  +K    LG+  EKVN+NGGA+ALGHPLG +GAR   TLL+ M+ +G   + GV +MCIG G G A V+ER
Sbjct:  163 GITREQQDEFGARSHRLAHEATQEGRFKNEIVPIEGH---DENGFVK--LIEEDETIRPETTAESLGQLRPAFDPKNGTVTAGTSSQLTDGASAMVLMSAERAEALGLTPIAKIRSMAVAGCDPAIMGYGPVPATKKALKRAGLKVEDIDFWELNEAFAGQSLPVLKDLKLLGVMEEKVNLNGGAIALGHPLGCSGARISTTLLNIMQAKGG--KLGVSTMCIGLGQGIATVWER 390          
BLAST of CV885169 vs. ExPASy Swiss-Prot
Match: FADA_VIBCH (3-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.297e-44
Identity = 100/235 (42.55%), Postives = 141/235 (60.00%), Query Frame = -1
Query:  196 GVTRQEQDLXXXXXXXXXXXXXXSGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKK-DGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 888
            G++RQ+QD                G+FK+EI+P      D         T+  D+ IRP TT+A LA+L+P F   +GT TAG +S +SDGA A+L+M    A   GL I    ++ +  G DPS+MG GP  A   A++ AGL + D+++ E+NEAFA+Q + C K LGL     +KVN+NGGA+ALGHPLG +G R   TL++ M+   KD ++G+ +MCIG G G A +FER
Sbjct:  159 GISRQQQDEFAARSHARAHAATLEGRFKNEILPTEGHAADGTL-----FTLDYDEVIRPETTVAGLAELRPVFDPANGTVTAGTSSALSDGASAMLVMSEQKAKALGLTIRARIKAMAVAGCDPSIMGYGPVPATHKALQRAGLTMQDMDVVELNEAFAAQSLPCAKDLGLLEMMDDKVNLNGGAIALGHPLGCSGTRISTTLINLME--AKDAKYGLATMCIGLGQGIATIFER 386          
BLAST of CV885169 vs. ExPASy Swiss-Prot
Match: THIM_BOVIN (3-ketoacyl-CoA thiolase, mitochondrial OS=Bos taurus GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.999e-44
Identity = 97/206 (47.09%), Postives = 124/206 (60.19%), Query Frame = -1
Query:  199 GKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 816
            G F +E+ PV  K    K       T+ VD+  RP TT+  L KL P FKK+GT TAGNAS VSDGAGAV++       +     L     +   G DP++MGIGP  AI  A+K  GL + D++L E+NEAFA QY+   K L LDP K NVNGGA+ALGHPL  +G+R  A L+ E++RRG   ++ V S CIG G G A + E
Sbjct:  197 GYFDNEMAPVEVKTRKGKQ------TMQVDEHPRPQTTMEQLNKLPPVFKKEGTVTAGNASGVSDGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPTIMGIGPVPAISGALKKTGLSLKDMDLVEVNEAFAPQYLAVEKSLNLDPSKTNVNGGAIALGHPLAGSGSRITAHLVHELRRRGG--KYAVGSACIGGGQGIAVIIE 394          
BLAST of CV885169 vs. ExPASy Swiss-Prot
Match: FADA_MARMS (3-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain MWYL1) GN=fadA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.917e-44
Identity = 103/235 (43.83%), Postives = 139/235 (59.15%), Query Frame = -1
Query:  196 GVTRQEQDLXXXXXXXXXXXXXXSGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK-KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLG---LDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 888
            GV+R++QD                G+F +EI+ +     D       ++ + VD+ IRP T++  LAKL P F  K GT TAG +S +SDGA A+L+M    A + GL  +   RS +  G DP++MG GP  A   A+K AGL I DI++ E+NEAFA+Q +  +K LG   L  +KVN+NGGA+ALGHPLG +G R   TLL+ M  R KD   G+ +MCIG G G A VFER
Sbjct:  163 GVSREDQDAFAVRSHRLAHEATLQGRFNNEIVSIEGHDADGN-----KILVEVDEVIRPETSMESLAKLAPVFMPKVGTVTAGTSSALSDGASAMLMMSAKKAEELGLTPIAKVRSMAVAGCDPAIMGYGPVPATKKALKRAGLTIADIDIVELNEAFAAQSIPVLKDLGLLDLVDDKVNLNGGAIALGHPLGCSGTRISTTLLNVM--REKDATVGLATMCIGMGQGIATVFER 390          
BLAST of CV885169 vs. ExPASy Swiss-Prot
Match: THIM_MOUSE (3-ketoacyl-CoA thiolase, mitochondrial OS=Mus musculus GN=Acaa2 PE=1 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 6.682e-44
Identity = 96/232 (41.38%), Postives = 134/232 (57.76%), Query Frame = -1
Query:  199 RFGVTRQEQDLXXXXXXXXXXXXXXSGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFKKDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 894
            ++ ++R++ D               +G F +E+ P+  K    K       T+ VD+  RP TT+  L KL   FKKDGT TAGNAS VSDGAGAV++       +     L     +   G DP++MGIGP  AI  A+K AGL + D++L ++NEAFA Q++   K L LDP K NV+GGA+ALGHPLG +G+R  A L+ E++RRG   ++ V S CIG G G A + +
Sbjct:  171 KYNISREDCDRYALQSQQRWKAANEAGYFNEEMAPIEVKTKKGKQ------TMQVDEHARPQTTLEQLQKLPSVFKKDGTVTAGNASGVSDGAGAVIIASEDAVKKHNFTPLARVVGYFVSGCDPTIMGIGPVPAINGALKKAGLSLKDMDLIDVNEAFAPQFLSVQKALDLDPSKTNVSGGAIALGHPLGGSGSRITAHLVHELRRRGG--KYAVGSACIGGGQGIALIIQ 394          
BLAST of CV885169 vs. ExPASy Swiss-Prot
Match: FADA_PSEU5 (3-ketoacyl-CoA thiolase OS=Pseudomonas stutzeri (strain A1501) GN=fadA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.944e-43
Identity = 105/235 (44.68%), Postives = 140/235 (59.57%), Query Frame = -1
Query:  196 GVTRQEQDLXXXXXXXXXXXXXXSGKFKDEIIPVNTKIVDPKTGVEKRVTISVDDGIRPNTTIADLAKLKPAFK-KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 888
            G+TR+ QD                GKFKDEIIP+       + G  K      D+ IRP TT+  LA+LKPAF  K GT TAG +SQ++DGA  +++M    A   GL  + V R+ +  GVDP++MG GP  +   A+K AGL +DDI+  E+NEAFA+Q +  +K L L     EKVN++GGA+ALGHP G +GAR   TLL+ MK+   +   GV +MCIG G G + VFER
Sbjct:  163 GITREAQDQFGYRSHQLAWKATQEGKFKDEIIPMEGH---DENGFLK--VFDYDETIRPETTLEGLAELKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAKDLGLQPMAVVRAMALAGVDPAIMGYGPVPSTQKALKRAGLTMDDISHVELNEAFAAQALPVLKDLKLLDKMEEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQ--NNGTLGVATMCIGLGQGISTVFER 390          
BLAST of CV885169 vs. ExPASy Swiss-Prot
Match: FADA_PSEAE (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa GN=fadA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.944e-43
Identity = 104/238 (43.70%), Postives = 140/238 (58.82%), Query Frame = -1
Query:  196 GVTRQEQDLXXXXXXXXXXXXXXSGKFKDEIIPVNTKIVDPKTGVEKRVTISV---DDGIRPNTTIADLAKLKPAFK-KDGTTTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 888
            G++R+ QD                GKFKDEIIP+         G ++   + V   D+ IRP TT+  LA+LKPAF  K GT TAG +SQ++DGA  +++M    A   G+  + V RS +  GVDP++MG GP  +   A+K AGL I DI+  E+NEAFA+Q +  +K L L     EKVN++GGA+ALGHP G +GAR   TLL+ MK+ G     GV +MC+G G G   VFER
Sbjct:  163 GISREAQDKFGARSHQLAWKATQEGKFKDEIIPME--------GYDENGFLKVFDFDETIRPETTVETLAELKPAFNPKGGTVTAGTSSQITDGASCMIVMSAQRAQDLGIQPMAVIRSMAVAGVDPAIMGYGPVPSTNKALKRAGLTIADIDFVELNEAFAAQALPVLKDLKLLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TLGVSTMCVGLGQGITTVFER 390          
The following BLAST results are available for this feature:
BLAST of CV885169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADA_PSEOL7.893e-4544.963-ketoacyl-CoA thiolase OS=Pseudomonas oleovorans ... [more]
THIL_THIVI1.346e-4443.16Acetyl-CoA acetyltransferase OS=Thiocystis violace... [more]
FADA_VIBPA1.346e-4442.983-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus... [more]
FADA_MARAV1.758e-4444.263-ketoacyl-CoA thiolase OS=Marinobacter aquaeolei ... [more]
FADA_VIBCH2.297e-4442.553-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA... [more]
THIM_BOVIN2.999e-4447.093-ketoacyl-CoA thiolase, mitochondrial OS=Bos taur... [more]
FADA_MARMS3.917e-4443.833-ketoacyl-CoA thiolase OS=Marinomonas sp. (strain... [more]
THIM_MOUSE6.682e-4441.383-ketoacyl-CoA thiolase, mitochondrial OS=Mus musc... [more]
FADA_PSEU51.944e-4344.683-ketoacyl-CoA thiolase OS=Pseudomonas stutzeri (s... [more]
FADA_PSEAE1.944e-4343.703-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_013A11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_013_T3_A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885169 ID=CV885169; Name=CV885169; organism=Citrus sinensis; type=EST; length=897bp
GTTAGCAATGGCTTTATTATGTTTCAACTAATACCCATAGTACCCATCAT
CAACTAATTTTGAAATTCAACCAATCCATGCTTACATAAAACAGTGAGAT
GCAATTGCAAACAAATGCATCTACTTGGCATCCTTTGACAAGTGGGTGTG
AGTTGGAACCATTCGAGCATTGCATAGTTCGTCAACACAATCTCCTCTCT
CGAAAACTGCTGCAGCCCCCATGCCTGAGCCTATGCACATGGAGATCACT
CCAAATCGACAATCTTTGCCACGACGCTTCATCTCACTCAATAGAGTTGC
AACACAGCGTGCACCTGTCGCACCCAGAGGATGCCCAAGAGCCACTGCAC
CTCCATTAACATTGACTTTTTCAGGATCAAGCCCCAGTTTCTTAATACAA
TAAACATACTGGGATGCAAATGCCTCATTTATCTCAAACAAATTAATATC
ATCAATCTGAAGACCTGCAGACTTCACTGCAGCAGGTATTGCAACAGCTG
GGCCTATGCCCATGACAGAAGGATCTACACCAACAGCAGAAAAACTCCTG
AACACACCAAGAATTGGAAGACCCTTCTGCACAGCCAAACTTCTCTTCAT
AAGAAGAACTGCTCCAGCTCCATCACTGACCTGGCTAGCATTCCCAGCAG
TTGTCGTCCCATCCTTTTTAAATGCAGGCTTCAGCTTAGCCAGATCTGCA
ATTGTTGTGTTTGGTCGAATTCCATCATCCACAGAAATTGTGACACGCTT
CTCCACTCCAGTTTTTGGGTCCACAATCTTGGTATTCACTGGAATAATTT
CATCTTTAAACTTGCCAGATGCAGTTGCAGCAGCAGCACGCCTATGAGAT
TCAACGGCAGCCAGGTCTTGCTCTTGTCGTGTCACACCAAATCTCTG
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