CV885124

Overview
NameCV885124
Unique NameCV885124
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885124 vs. ExPASy Swiss-Prot
Match: RS23_YEAST (40S ribosomal protein S23 OS=Saccharomyces cerevisiae GN=RPS23A PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.842e-53
Identity = 101/133 (75.94%), Postives = 115/133 (86.47%), Query Frame = -3
Query:  252 GKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 647
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALW 136          
BLAST of CV885124 vs. ExPASy Swiss-Prot
Match: RS23_SACCA (40S ribosomal protein S23 OS=Saccharomyces castellii GN=RPS23A PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.842e-53
Identity = 101/133 (75.94%), Postives = 115/133 (86.47%), Query Frame = -3
Query:  252 GKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 647
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALW 136          
BLAST of CV885124 vs. ExPASy Swiss-Prot
Match: RS23_SACBA (40S ribosomal protein S23 OS=Saccharomyces bayanus GN=RPS23A PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.842e-53
Identity = 101/133 (75.94%), Postives = 115/133 (86.47%), Query Frame = -3
Query:  252 GKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 647
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALW 136          
BLAST of CV885124 vs. ExPASy Swiss-Prot
Match: RS23_CANGA (40S ribosomal protein S23 OS=Candida glabrata GN=RPS23 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.842e-53
Identity = 101/133 (75.94%), Postives = 115/133 (86.47%), Query Frame = -3
Query:  252 GKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 647
            GK RG+ + RKL+ HRR  RWA+ +YKK  LG  +K  PF GSSHAKGIVLEK+GIE+KQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+
Sbjct:    4 GKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALW 136          
BLAST of CV885124 vs. ExPASy Swiss-Prot
Match: RS23_ASPFU (40S ribosomal protein S23 OS=Aspergillus fumigatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.406e-53
Identity = 102/133 (76.69%), Postives = 113/133 (84.96%), Query Frame = -3
Query:  252 GKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 647
            GK RG+ A RKL  HRR QRWAD  YKK  LG  +K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC +VQLIKNGKK+ AFVPNDGCLN+I+ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+
Sbjct:    4 GKPRGLNAARKLSNHRREQRWADLHYKKRLLGTAFKSSPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVKVQLIKNGKKVTAFVPNDGCLNFIDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALW 136          
BLAST of CV885124 vs. ExPASy Swiss-Prot
Match: RS23_NEUCR (40S ribosomal protein S23 OS=Neurospora crassa GN=rps-23 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.104e-53
Identity = 101/133 (75.94%), Postives = 114/133 (85.71%), Query Frame = -3
Query:  252 GKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 647
            GK RG+ A RKL+ +RR QRW+D  YKK  LG  +K  PF GSSHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+
Sbjct:    4 GKPRGLNAARKLRNNRREQRWSDLHYKKRALGTAFKSSPFGGSSHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALW 136          
BLAST of CV885124 vs. ExPASy Swiss-Prot
Match: RS23_SCHPO (40S ribosomal protein S23 OS=Schizosaccharomyces pombe GN=rps23a PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.660e-52
Identity = 99/134 (73.88%), Postives = 113/134 (84.33%), Query Frame = -3
Query:  252 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 650
            MGK  G+ A RKL+ HRR +RWAD  YKK  LG  +K  PF GSSHAKGIV+EKIG+EAKQPNSAIRKC RVQLIKNGKK+ AFVP+DGCLN+++ENDEVL++GFGRKG A GDIPGVRFKVVKV+GV L ALF
Sbjct:    1 MGKPAGLNAARKLRNHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALF 134          
BLAST of CV885124 vs. ExPASy Swiss-Prot
Match: RS23_DICDI (40S ribosomal protein S23 OS=Dictyostelium discoideum GN=rps23 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.941e-51
Identity = 96/134 (71.64%), Postives = 110/134 (82.09%), Query Frame = -3
Query:  252 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 650
            MGK  G+   RKL+ HRR QRW DK YKK+H G   K  PF G+SHA GIV+ ++GIEAKQPNSAIRKC RVQL KNGKKI AFVPNDGCLNYI+END+VL+AG GR GH+VGDIPGVRFKVVKVS VSL+A++
Sbjct:    1 MGKPNGLKTARKLRNHRRVQRWNDKLYKKAHFGTALKANPFGGASHASGIVVSRLGIEAKQPNSAIRKCVRVQLKKNGKKITAFVPNDGCLNYIQENDKVLVAGLGRSGHSVGDIPGVRFKVVKVSSVSLIAIY 134          
BLAST of CV885124 vs. ExPASy Swiss-Prot
Match: RS12_TETTH (40S ribosomal protein S12 OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.841e-51
Identity = 95/133 (71.43%), Postives = 110/133 (82.71%), Query Frame = -3
Query:  252 MGKTRGMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 650
            +GK RG+ AGRKL  HR+ QRWAD  + K  LG+ W+ PF G+SHAKG+V EKIGIE+KQPNSA+RKC RV L KN KKIAAFVP DGCLN++ ENDEVL+AG GR+GHAVGDIPGVRFKVV V G+SLLALF
Sbjct:    3 VGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALF 135          
BLAST of CV885124 vs. ExPASy Swiss-Prot
Match: RS12_PICTO (30S ribosomal protein S12P OS=Picrophilus torridus GN=rps12p PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.186e-37
Identity = 72/126 (57.14%), Postives = 98/126 (77.78%), Query Frame = -3
Query:  264 GMGAGRKLKTHRRTQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSL 635
            G+ AG+KL   R+T RW+D+ YK+  L  + K  P  G+  AKGIV+EK+GIEAKQPNS IRKC ++QLIKNG++++AF P DG +NYI+E+DEV++ G  GR G + GDIPGVR+KV+KV+G+SL
Sbjct:    4 GLNAGKKLMKSRKTYRWSDRDYKRRVLNLKKKSDPLEGAPQAKGIVIEKVGIEAKQPNSGIRKCVKIQLIKNGRQLSAFAPGDGAINYIDEHDEVVVEGIGGRMGRSKGDIPGVRYKVIKVNGISL 129          
The following BLAST results are available for this feature:
BLAST of CV885124 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_YEAST1.842e-5375.9440S ribosomal protein S23 OS=Saccharomyces cerevis... [more]
RS23_SACCA1.842e-5375.9440S ribosomal protein S23 OS=Saccharomyces castell... [more]
RS23_SACBA1.842e-5375.9440S ribosomal protein S23 OS=Saccharomyces bayanus... [more]
RS23_CANGA1.842e-5375.9440S ribosomal protein S23 OS=Candida glabrata GN=R... [more]
RS23_ASPFU2.406e-5376.6940S ribosomal protein S23 OS=Aspergillus fumigatus... [more]
RS23_NEUCR4.104e-5375.9440S ribosomal protein S23 OS=Neurospora crassa GN=... [more]
RS23_SCHPO2.660e-5273.8840S ribosomal protein S23 OS=Schizosaccharomyces p... [more]
RS23_DICDI2.941e-5171.6440S ribosomal protein S23 OS=Dictyostelium discoid... [more]
RS12_TETTH3.841e-5171.4340S ribosomal protein S12 OS=Tetrahymena thermophi... [more]
RS12_PICTO9.186e-3757.1430S ribosomal protein S12P OS=Picrophilus torridus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012G08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885124 ID=CV885124; Name=CV885124; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTGTGAGCATTAAATTCATTTAAGAGAAGAATGACAGCCATTT
GAACTGATTAACCAAATATCAATTCTAGAGTCAAAATTGTACCACAGCAA
TACATTGACTAGACAATTGATAAAAAATTGTTCATAAAATCCACTCGATA
ACAAAAAGTGACAATCCGAATTCTTTAAAAGAACTATCAAAGAGTTTGCA
GGTTAAGACAGGTCTCTTCTCTTAAGACCTGGGCTTCTCCTTCTTCTCTT
TGAAGAGAGCCAAGAGAGAGACACCAGAGACCTTCACAACCTTGAACCTG
ACACCGGGAATATCACCGACCGCATGTCCCTTACGTCCAAATCCAGCAAT
CAACACCTCATCATTTTCTTCAATATAGTTCAAGCAACCATCATTTGGAA
CAAAAGCGGCAATCTTCTTTCCGTTTTTGATAAGTTGAACTCTAGCACAC
TTACGAATAGCAGAGTTAGGCTGCTTAGCTTCAATACCTATCTTCTCAAG
AACAATTCCTTTAGCATGGGAAGAACCAGCAAATGGCTTCTTCCACTCAT
TGCCGAGGTGAGACTTTTTGTATGACTTATCAGCCCACCTTTGAGTCCTA
CGGTGAGTCTTCAGCTTGCGACCAGCTCCCATACCACGTGTCTTCCCCAT
GATTCCTGATTGTAGTTACTCGACTGCTACGAGGCTGTGTAGAAGTTAAG
GCGAAGAGAAGA
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