CV885111

Overview
NameCV885111
Unique NameCV885111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885111 vs. ExPASy Swiss-Prot
Match: NIP12_ARATH (Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.367e-11
Identity = 46/179 (25.70%), Postives = 80/179 (44.69%), Query Frame = -1
Query:  316 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFI 852
            + VLVY    ISG H NPAVT       +  L +   Y+++Q +G+      ++           G  +       +G+ L + +I   +  Y +F  +    + R   +  LA L +G  V +  +    V+G  +NP RSLG A++Y+    +   WI+ V P +GA   A+ +  +
Sbjct:   95 VMVLVYSLGHISGAHFNPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLLFGLDQDVCSGKHDVFVGTLPSGSNLQSFVIEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVIIAGPVSGASMNPGRSLGPAMVYS---CYRGLWIYIVSPIVGAVSGAWVYNMV 268          
BLAST of CV885111 vs. ExPASy Swiss-Prot
Match: PDUF_SALTY (Propanediol diffusion facilitator OS=Salmonella typhimurium GN=pduF PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.037e-11
Identity = 64/212 (30.19%), Postives = 89/212 (41.98%), Query Frame = -1
Query:  316 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGAN---------ELADGYSTGTGLG--------AEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQW---------------IFWVGPFIGA-AIAAFYHQFI 852
            I + VY TAGISGGH+NPAVT  L+L       + + Y++AQ  GA  G  L      S +T +    +         +LA  +ST              E++ T +L+  + + TD            LAPL IG  V ++  +T  +TG  +NPAR  G  +       W   W               +  V P IGA A AA Y  FI
Sbjct:   50 ISLAVYLTAGISGGHLNPAVTIALWLFACFPKQKVLPYIIAQFAGAFGGALLAYVLYSSLFTEFETAHHMVRGSVESLQLASIFSTYPAAALNVWQAALVEVVITSILMGMIMALTDDGNGIPKG---PLAPLLIGILVAVIGASTGPLTGFAMNPARDFGPKLF-----TWLAGWGNMAMSGGREIPYFIVPIVAPVIGACAGAAIYRYFI 253          
BLAST of CV885111 vs. ExPASy Swiss-Prot
Match: SIP11_ORYSJ (Aquaporin SIP1-1 OS=Oryza sativa subsp. japonica GN=SIP1-1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 46/192 (23.96%), Postives = 78/192 (40.62%), Query Frame = -1
Query:  295 MIFVLVYCTAGISGGHINPAV-----TFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASK 855
            ++F        + G   NP         GL   R  SL    +   AQ  GA+ G   +       Y    GG +   D +   TG  AE++ TFV+   V          +    P++    +  +   + L   + TG  +NPA + G A + N+   W+  +++W+ PF+GA +AA+  + +    A K
Sbjct:   57 LLFAFNLLCDALGGASFNPTALAAFHAAGLSSPRHSSLFPLALRFPAQAAGAVGGAMAISELMPEQYKHMLGGPSLKVDLH---TGAAAELVLTFVITLAVLWII-----VKGPRNPIVKTWMLSISTVCLVLTGAAYTGPSMNPANAFGWAYVNNRHNTWEQFYVYWICPFVGAVLAAWVFRAVFPPPAPK 240          
BLAST of CV885111 vs. ExPASy Swiss-Prot
Match: GLPF_ECOLI (Glycerol uptake facilitator protein OS=Escherichia coli (strain K12) GN=glpF PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 55/212 (25.94%), Postives = 93/212 (43.87%), Query Frame = -1
Query:  313 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKA--------FQKSYYTRYGGGAN-ELADGYST--------GTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQW---------------IFWVGPFIGAAIAAFYHQFIL 852
            + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV          F+++++   G   + +LA  +ST              E++ T +L+  + + TD            LAPL IG  + ++  +   +TG  +NPAR  G  V      AW   W               +   GP +GA + AF ++ ++
Sbjct:   52 VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLI 255          
BLAST of CV885111 vs. ExPASy Swiss-Prot
Match: GLPF_ECOL6 (Glycerol uptake facilitator protein OS=Escherichia coli O6 GN=glpF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 55/212 (25.94%), Postives = 93/212 (43.87%), Query Frame = -1
Query:  313 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKA--------FQKSYYTRYGGGAN-ELADGYST--------GTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQW---------------IFWVGPFIGAAIAAFYHQFIL 852
            + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV          F+++++   G   + +LA  +ST              E++ T +L+  + + TD            LAPL IG  + ++  +   +TG  +NPAR  G  V      AW   W               +   GP +GA + AF ++ ++
Sbjct:   52 VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLI 255          
BLAST of CV885111 vs. ExPASy Swiss-Prot
Match: GLPF_ECO57 (Glycerol uptake facilitator protein OS=Escherichia coli O157:H7 GN=glpF PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 55/212 (25.94%), Postives = 93/212 (43.87%), Query Frame = -1
Query:  313 IFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVMYMVAQCLGAICGCGLVKA--------FQKSYYTRYGGGAN-ELADGYST--------GTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATISVTGTGINPARSLGAAVIYNKEKAWDDQW---------------IFWVGPFIGAAIAAFYHQFIL 852
            + + +Y TAG+SG H+NPAVT  L+L       + + ++V+Q  GA C   LV          F+++++   G   + +LA  +ST              E++ T +L+  + + TD            LAPL IG  + ++  +   +TG  +NPAR  G  V      AW   W               +   GP +GA + AF ++ ++
Sbjct:   52 VAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGLILALTDDGNGVPRG---PLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVF-----AWLAGWGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLI 255          
The following BLAST results are available for this feature:
BLAST of CV885111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
NIP12_ARATH2.367e-1125.70Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2... [more]
PDUF_SALTY4.037e-1130.19Propanediol diffusion facilitator OS=Salmonella ty... [more]
SIP11_ORYSJ5.273e-1123.96Aquaporin SIP1-1 OS=Oryza sativa subsp. japonica G... [more]
GLPF_ECOLI6.886e-1125.94Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECOL66.886e-1125.94Glycerol uptake facilitator protein OS=Escherichia... [more]
GLPF_ECO576.886e-1125.94Glycerol uptake facilitator protein OS=Escherichia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012F12_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T3_F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885111 ID=CV885111; Name=CV885111; organism=Citrus sinensis; type=EST; length=855bp
AAAGCACTCACTATTGAAATTTCAGATAAAACCACGAGTACAGAAGTCGA
AAGGGGAAGGAATGCAAAGCAAATAATAATTTTTGGGGCACACTAAAAAC
GAGTGTCCTCAGGTAAACAAAAGACACACACAAAGTGCTGCGGGATCTAC
ACCAGCTCTACTAAATACTGATGCAAATAAAACAATGTACAAATTCCATA
GTCACGAAGCCGCTTGACAGCCATTGATTAATCCTCCAGTAATTATTTTA
AAAGTTAATTAAATGTTGGAGGAGCTTTTGAAGGATCCAAGAGCTTTAGA
AGCAGATGCTCTGAGGATGAATTGGTGGTAAAATGCAGCAATTGCAGCAC
CAATGAAGGGGCCAACCCAGAAGATCCATTGATCATCCCAAGCCTTCTCC
TTGTTGTAAATCACCGCAGCTCCCAAACTTCTAGCGGGGTTGATGCCAGT
TCCAGTGACAGAGATCGTAGCCAAGTGAACCATGAACACAGCAAATCCAA
TTGGCAATGGTGCCAAGACAGGAACATGGGAGTCCCTAGCATTTCTCTTG
GGATCAGTGGCGGAGAAAACAGTGTAGACAAGAACAAAGGTACCAATGAT
CTCAGCACCCAATCCAGTGCCAGTGCTGTACCCATCAGCGAGCTCATTGG
CTCCACCGCCGTATCTTGTGTAGTAAGACTTCTGGAAAGCCTTAACGAGC
CCGCAGCCACATATGGCTCCCAAACACTGAGCCACCATGTACATTACGGC
TCGCACCAGTGACACCTTCCGCGCCAAGAACAGCCCAAATGTCACCGCCG
GGTTAATGTGTCCACCAGAGATACCAGCAGTGCAGTAAACAAGAACAAAG
ATCAT
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