CV885106

Overview
NameCV885106
Unique NameCV885106
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length954
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885106 vs. ExPASy Swiss-Prot
Match: HDCPA_DANRE (Hepatocellular carcinoma down-regulated mitochondrial carrier homolog A OS=Danio rerio GN=hdmcpa PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.244e-11
Identity = 61/217 (28.11%), Postives = 86/217 (39.63%), Query Frame = -1
Query:  319 AELTPLLRLEAGACAGIIAMSATYPMDMVRGRLTVQTEKSPY---------RYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXAYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDIL 942
            AE T L    +G   G+  +S   P D+V+ RL  QTE             +Y G  H L ++ RE+G   LYRG  P  +   P     F  Y +L     +  P G     E   T  L               P+DVI+ R+QM G +         G+ R    Y G++     T R EG G  ++ L  N ++  P   + F  YEV   +L
Sbjct:   90 AENTKLDVFMSGLAGGVAQVSVMSPGDIVKVRLQCQTESRHSVNPKYSVKPKYSGPIHCLLSICREQGLSGLYRGALPLALRDGPSFATYFLTYHTL---CARLTPDG---QKEPEWTVVLLSGGVAGMSGWAVGTPMDVIKARLQMDGVR---------GQRR----YRGLLHCLTVTTRTEGLGVFFRSLGINCLRAFPVNMVVFAVYEVSVRVL 287          
BLAST of CV885106 vs. ExPASy Swiss-Prot
Match: ADT_NEUCR (ADP,ATP carrier protein OS=Neurospora crassa GN=acp PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.244e-11
Identity = 51/187 (27.27%), Postives = 79/187 (42.25%), Query Frame = -1
Query:  370 LEAGACAGIIAMSATYPMDMVRGRLTVQTEKSPY----RYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXAYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVV 918
            L +G  AG  ++   Y +D  R RL    + +      ++ G+       +  +G   LYRG+ PSV G+V Y GL F +Y+S+       KP+ L  D + +                  +YPLD IRRRM M   +               ++Y    DA  + V  EG  +L+KG   N ++ V
Sbjct:  122 LASGGAAGATSLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTIASDGIAGLYRGFGPSVAGIVVYRGLYFGLYDSI-------KPVLLVGDLKNNFLASFALGWCVTTAAGIASYPLDTIRRRMMMTSGE--------------AVKYKSSFDAASQIVAKEGVKSLFKGAGANILRGV 287          
BLAST of CV885106 vs. ExPASy Swiss-Prot
Match: ADT2_ARATH (ADP,ATP carrier protein 2, mitochondrial OS=Arabidopsis thaliana GN=ANT2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.244e-11
Identity = 49/188 (26.06%), Postives = 81/188 (43.09%), Query Frame = -1
Query:  370 LEAGACAGIIAMSATYPMDMVRGRLTVQTEKSPY-----RYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXAYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVV 918
            L +G  AG  ++   Y +D  R RL   ++ +       ++ G+       L+ +G   LYRG+  S  G++ Y GL F +Y+S+       KP+ L  D + S                  +YP+D +RRRM M   +               ++Y    DAF + V+ EG  +L+KG   N ++ V
Sbjct:  193 LASGGAAGASSLLFVYSLDYARTRLANDSKSAKKGGGERQFNGLVDVYKKTLKSDGIAGLYRGFNISCAGIIVYRGLYFGLYDSV-------KPVLLTGDLQDSFFASFALGWLITNGAGLASYPIDTVRRRMMMTSGE--------------AVKYKSSFDAFSQIVKKEGAKSLFKGAGANILRAV 359          
BLAST of CV885106 vs. ExPASy Swiss-Prot
Match: ODC_SCHPO (Probable mitochondrial 2-oxodicarboxylate carrier OS=Schizosaccharomyces pombe GN=SPAC328.09 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 56/175 (32.00%), Postives = 80/175 (45.71%), Query Frame = -1
Query:  397 AGACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESL-KVW--LIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXAYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKG 912
            AGA AGI  +   YP+D+V+ R+ +   KS Y   G F  L  +++ EGP  LYRG  P ++   P   L FA  ++  K+W  + K K    A    LS+ T                 P ++++ R+Q V  K AS             +YNG +D F K V+ E   ALY G
Sbjct:   14 AGAVAGISEVLTLYPLDVVKTRMQLSVGKSDYN--GTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLWRKVFKRKDSSPA----LSILT----GSCAGFTETFVVVPFELMKIRLQDV--KNAS-------------KYNGTVDCFTKIVKQERILALYNG 163          
BLAST of CV885106 vs. ExPASy Swiss-Prot
Match: KMCP1_RAT (Kidney mitochondrial carrier protein 1 OS=Rattus norvegicus GN=Slc25a30 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 56/204 (27.45%), Postives = 95/204 (46.57%), Query Frame = -1
Query:  322 TPLLRLEAGACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXAYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVKDI 933
            T L+ +  G  +G+I+ +   P D+++ R+  Q         G+     ++ ++EG R L++G   +       VG+   VY+  K  LI +   GL  D+   V+T               + P+DV+R RM        +   + DGR      Y G +D   +T ++EGF ALYKG  PN +++ P   + F+TYE +K +
Sbjct:  105 TLLINVVCGILSGVISSAIANPTDVLKIRMQAQNSAVQ---GGMIGNFISIYQQEGTRGLWKGVSLTAQRAAIVVGVELPVYDITKKHLILS---GLMGDT---VSTHFLSSFTCGLVGALASNPVDVVRTRMM-------NQRDLRDGRCSG---YKGTLDCLLQTWKNEGFFALYKGFWPNWLRLGPWNIIFFLTYEQLKKL 289          
BLAST of CV885106 vs. ExPASy Swiss-Prot
Match: FLX1_YEAST (Mitochondrial FAD carrier protein FLX1 OS=Saccharomyces cerevisiae GN=FLX1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 51/207 (24.64%), Postives = 96/207 (46.38%), Query Frame = -1
Query:  328 DAELTPLLRLEAGACAGIIAMSATYPMDMVRGRLTVQTEKSPYRYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTK-PLGLAEDSELSVTTRLXXXXXXXXXXXXXAYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSISLAFVTYEVVK 945
            D ++  L+ L AGA +G++    T P+ +++ R+   ++ +   Y  +++ +  +LR +G + L++G  P++ GV     L FAVY++LK   ++ K   GL  D  L+    +              YP  +++  +Q                 RA  +   +    +  + ++GF  LYKGL  N V+ +PS  + F  YE +K
Sbjct:  120 DHKMNSLIYLSAGASSGLMTAILTNPIWVIKTRIMSTSKGAQGAYTSMYNGVQQLLRTDGFQGLWKGLVPALFGV-SQGALYFAVYDTLKQRKLRRKRENGL--DIHLTNLETIEITSLGKMVSVTLVYPFQLLKSNLQSF---------------RANEQKFRLFPLIKLIIANDGFVGLYKGLSANLVRAIPSTCITFCVYENLK 308          
BLAST of CV885106 vs. ExPASy Swiss-Prot
Match: ADT_SCHPO (ADP,ATP carrier protein OS=Schizosaccharomyces pombe GN=anc1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.155e-11
Identity = 50/187 (26.74%), Postives = 80/187 (42.78%), Query Frame = -1
Query:  370 LEAGACAGIIAMSATYPMDMVRGRLTVQTEKSPY----RYRGIFHALSTVLREEGPRALYRGWFPSVIGVVPYVGLNFAVYESLKVWLIKTKPLGLAEDSELSVTTRLXXXXXXXXXXXXXAYPLDVIRRRMQMVGWKEASSVVIGDGRNRAPLEYNGMIDAFRKTVRHEGFGALYKGLVPNSVKVV 918
            L +G  AG  ++   Y +D  R RL    + +      ++ G+        R +G R LYRG+ PSV+G+V Y GL F +Y++L       KP+ L    E +                  +YPLD IRRRM M   +               ++Y+   +  R+ +  EG  + +KG   N ++ V
Sbjct:  136 LASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTL-------KPVVLVGPLEGNFLASFLLGWAVTTGSGVASYPLDTIRRRMMMTSGE--------------AVKYSSSFECGRQILAKEGARSFFKGAGANILRGV 301          
The following BLAST results are available for this feature:
BLAST of CV885106 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
HDCPA_DANRE6.244e-1128.11Hepatocellular carcinoma down-regulated mitochondr... [more]
ADT_NEUCR6.244e-1127.27ADP,ATP carrier protein OS=Neurospora crassa GN=ac... [more]
ADT2_ARATH6.244e-1126.06ADP,ATP carrier protein 2, mitochondrial OS=Arabid... [more]
ODC_SCHPO8.155e-1132.00Probable mitochondrial 2-oxodicarboxylate carrier ... [more]
KMCP1_RAT8.155e-1127.45Kidney mitochondrial carrier protein 1 OS=Rattus n... [more]
FLX1_YEAST8.155e-1124.64Mitochondrial FAD carrier protein FLX1 OS=Saccharo... [more]
ADT_SCHPO8.155e-1126.74ADP,ATP carrier protein OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012F08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885106 ID=CV885106; Name=CV885106; organism=Citrus sinensis; type=EST; length=954bp
TTTTTTTAATCAATTACTAGGAAGGACTCAAAAATTTGCTTATTTTCTGC
TTTGTTCCTTCTGCATAACTTATTGACACGGCACATGAATAGGAAGTTGA
AAGGTACAGAATGTTCCCAGGGAAACATAGATGGGAAACAAAAGAAAGCG
AATTATAAACACAAGCTCAAACGTGTATCTAGACTTGACCTTAGAAAGAC
AAAAGGCAAGAATGCCTACTTTACCTTTTCCCTAACCCCTTCCCTACAAA
AATAACACCTCTGTCCAACAAATGTCAAAGTTCCACAAACTTCAGTCTGA
TATTCTAATTTCAACTCCTAAAATGTCCTTCACCACCTCATAAGTCACAA
ATGCTAGTGATATGGATGGAACAACCTTCACAGAATTGGGAACCAAGCCC
TTGTATAATGCTCCAAACCCCTCGTGCCGGACAGTTTTTCGGAATGCATC
AATCATGCCATTATATTCAAGAGGAGCTCTGTTTCTCCCATCACCAATGA
CCACAGAGGAAGCTTCTTTCCAACCCACCATCTGCATTCTTCGGCGTATA
ACATCAAGAGGGTAGGCAACAGTTTGGCCAACTGTTCCTGCAGCAGCTCC
ACACGCTAGTCTTGTCGTCACACTCAACTCAGAATCTTCAGCTAACCCAA
GGGGCTTAGTTTTGATTAACCAAACTTTTAAAGATTCATACACAGCAAAG
TTGAGACCCACGTAGGGGACAACTCCAATTACTGAAGGAAACCAGCCCCT
GTACAAAGCCCGTGGGCCTTCTTCCCGCAGCACAGTTGAAAGAGCATGGA
AGATTCCCCTGTACCGGTATGGAGACTTTTCTGTCTGAACAGTTAGCCTC
CCCCGTACCATATCCATGGGGTAAGTGGCAGACATGGCAATTATTCCAGC
ACATGCTCCAGCTTCAAGGCGTAAAAGAGGAGTGAGTTCAGCATCTTCAT
TTCC
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