CV885078

Overview
NameCV885078
Unique NameCV885078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: CATL6_HUMAN (Putative cathepsin L-like protein 6 OS=Homo sapiens GN=CTSLL6 PE=5 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.855e-11
Identity = 61/220 (27.73%), Postives = 89/220 (40.45%), Query Frame = -1
Query:  221 ILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXXXXXXXXXXXXGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSIS----AYRINSDPEDIMAEIYKNGPVEVSF-TVYEDFAHYKSGVYKHITGDVMG-GHAVKLIGW---GTSDDGEDYWILAN-QWNRSWGADGYFKI-KRGSNECGI 847
            + DQG CGSCWAF A  AL  +     G  +SL+                  G+  + +RY   +G +  E                 +YP    V+ C       R +  YS +       I S  +D+   +   GP+ V+    +  F  YK G+Y     D  G  HA+ L+G+   G   D   YW++ N    ++WG DGY K+ K   N CGI
Sbjct:   72 VKDQGQCGSCWAFSATGALEGQMFWKTGKLISLNEQNLVDCSGPQGNEGCNGGFMDNPFRYVQENGGLDSEA----------------SYPYEGKVKTC-------RYNPKYSAANDTGFVDIPSQEKDLAKAVATVGPISVAAGASHVSFQFYKKGIYFEPRCDPEGLDHAMLLVGYSYEGADSDNNKYWLVKNSSEGKNWGMDGYIKMAKDRRNNCGI 268          
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: MDO1_PSEMR (Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.164e-11
Identity = 57/213 (26.76%), Postives = 90/213 (42.25%), Query Frame = -1
Query:  224 ISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXXXXXXXXXXXXGYPISAWRYFV-HHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYED-FAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECG 856
            ++ + +QG CG CWAF A+  +   + I  G  + LS                  G+   A+ + + ++GV T+E  PY    G     C   Y               + NS + +  +Y   +D   +M  +  N P+        D F +YK GVY    G  +  HA+ +IG+G     + YWI+ N W  SWG  GY +I+R  +  G
Sbjct:   14 VNEVKNQGPCGGCWAFAAIATVEGIYKIRKGNLVYLS---EQEVLDCAVSYGCKGGWVNRAYDFIISNNGVTTDENYPYRAYQGT----CNANY---------------FPNSAYITGYSYVRRNDESHMMYAV-SNQPIAALIDASGDNFQYYKGGVYSGPCGFSL-NHAITIIGYGR----DSYWIVRNSWGSSWGQGGYVRIRRDVSHSG 198          
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: CATL_BRUPA (Cathepsin L-like OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.397e-11
Identity = 61/218 (27.98%), Postives = 84/218 (38.53%), Query Frame = -1
Query:  221 ISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXXXXXXXXXXXXGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMA---EIYKNGPVEVSFTVYE-DFAHYKSGVYKHITGDV-MGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRG-SNECGI 856
            ++ + +QG CGSC+AF    AL        G  L LS                  GY  +A++Y   +G+  E   PY  +                  ++C      W+ S             P D +A    + K GPV V  +  +  F  YK GVY    G+     HAV  +G+GT     DYWI+ N W   WG DGY  + R   N C I
Sbjct:  194 VTPVRNQGECGSCYAFATAAALEAYHKQMTGRLLDLSPQNIVDCTRNLGNNGCSGGYMPTAFQYASRYGIAMESRYPYVGTE-----------------QRC-----RWQQSIAVVTDNGFNEIQPGDELALKHAVAKRGPVVVGISGSKRSFRFYKDGVYSE--GNCGRPDHAVLAVGYGTHPSYGDYWIVKNSWGTDWGKDGYVYMARNRGNMCHI 387          
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: CPP3_ENTHI (Cysteine proteinase 3 (Fragment) OS=Entamoeba histolytica GN=CPNP PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 64/224 (28.57%), Postives = 86/224 (38.39%), Query Frame = -1
Query:  212 ISRILDQGHCGSCWAFGAVEALSDRFCIHFGMN---LSLSVNXXXXXXXXXXXXXXXXGYPISAWRYFVHHGVVTEECDPYF--DSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTVYE-DFAHYKSGVY---KHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNECGIEED 856
            ++ I DQ  CGSC+ FG++ AL  R  I  G N   L LS                  G   + + Y + +GV  E   PY   DST      C+      K   K    N++ RN+              E  +      G V+VS       F  YKSG Y   K         H V  +G+G  D G++ WI+ N W   WG  GY  +    N CG+  D
Sbjct:   99 VTPIRDQAQCGSCYTFGSLAALEGRLLIEKGGNANTLDLSEEHLVQCTRDNGNNGCNGGLGSNVYDYIIQNGVAKESDYPYTGTDST------CKT---NVKAFAKITGYNKVPRNN--------------EAELKAALSQGLVDVSIDASSAKFQLYKSGAYSDTKCKNNFFALNHEVCAVGYGVVD-GKECWIVRNSWGTGWGDKGYINMVIEGNTCGVATD 298          
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: CATK_MOUSE (Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.049e-11
Identity = 56/216 (25.93%), Postives = 86/216 (39.81%), Query Frame = -1
Query:  221 ISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXXXXXXXXXXXXGYPISAWRYFVHHGVV-TEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYRINSDPEDIMAEIYKNGPVEVSFTV-YEDFAHYKSGVYKHITGDVMG-GHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRG-SNECGI 856
            ++ + +QG CGSCWAF +  AL  +     G  L+LS                   Y  +A++Y   +G + +E+  PY                   C+     K    R  +   +       + + +   + + GP+ VS       F  Y  GVY     D     HAV ++G+GT   G  +WI+ N W  SWG  GY  + R  +N CGI
Sbjct:  127 VTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLLALSPQNLVDCVTENYGCGGG--YMTTAFQYVQQNGGIDSEDAYPYVGQD-------------ESCMYNATAKAAKCRGYREIPVG------NEKALKRAVARVGPISVSIDASLASFQFYSRGVYYDENCDRDNVNHAVLVVGYGTQK-GSKHWIIKNSWGESWGNKGYALLARNKNNACGI 320          
BLAST of CV885078 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.206e-11
Identity = 59/220 (26.82%), Postives = 92/220 (41.82%), Query Frame = -1
Query:  215 ISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVNXXXXXXXXXXXXXXXXGYPISAWRYFVHHGVVTEECDPYFDSTGCSHPGCEPAYPTPKCVRKCVKKNQLWRNSKHYSISAYR-INSDPEDIMAEIYKNGPVEVSFTVY-EDFAHYKSGVYKHITGDVMGGHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRGSNE----CGIEE 856
            ++ + DQG CGSCWAF  V A+     I  G   SLS                              +G + +    Y  STG  H   E  YP       C ++ +   + +  +IS Y  +  + ++ + +   + PV V+      DF  YK GV+    G  +  H V  +G+G+S  G DY I+ N W   WG  G+ ++KR + +    CGI +
Sbjct:  149 VAPVKDQGQCGSCWAFSTVAAVEGINQITTGNLSSLSEQELIDCDTTFNSGC---------------NGGLMDYAFQYIISTGGLHK--EDDYPYLMEEGICQEQKE---DVERVTISGYEDVPENDDESLVKALAHQPVSVAIEASGRDFQFYKGGVFNGKCGTDLD-HGVAAVGYGSSK-GSDYVIVKNSWGPRWGEKGFIRMKRNTGKPEGLCGINK 346          
The following BLAST results are available for this feature:
BLAST of CV885078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
CATL6_HUMAN1.855e-1127.73Putative cathepsin L-like protein 6 OS=Homo sapien... [more]
MDO1_PSEMR3.164e-1126.76Macrodontain-1 OS=Pseudananas macrodontes PE=1 SV=... [more]
CATL_BRUPA5.397e-1127.98Cathepsin L-like OS=Brugia pahangi PE=1 SV=1[more]
CPP3_ENTHI7.049e-1128.57Cysteine proteinase 3 (Fragment) OS=Entamoeba hist... [more]
CATK_MOUSE7.049e-1125.93Cathepsin K OS=Mus musculus GN=Ctsk PE=2 SV=2[more]
XCP1_ARATH9.206e-1126.82Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_012D12_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_012_T7_D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV885078 ID=CV885078; Name=CV885078; organism=Citrus sinensis; type=EST; length=868bp
TTTTTTTTTTTTTTTATGCAAGACGGGAGCTTCCCATTTCATGCCTTGAT
AGCTTAGGTTCAACGATACACCCCTATAGCTACACATTTGATATATAAAT
AACAACATGAAGGTATAGCAAAGTCTGCTCTCAAGCTGAAGCATCCTCAA
ACATATCTGCACTTGTAATCTCTTTGACAAGATTTTTGGATGAAGGCAAA
CCAGCAACCACATCCTCTTCAATACCACACTCATTTGATCCTCTTTTAAT
CTTGAAGTAACCATCCGCACCCCAGCTTCTATTCCACTGATTAGCGAGAA
TCCAGTAATCCTCGCCATCATCACTAGTTCCCCAACCAATAAGCTTAACA
GCATGACCCCCCATTACATCGCCTGTGATGTGTTTGTAGACCCCAGATTT
GTAGTGAGCAAAATCCTCATAAACTGTGAAGGAAACTTCAACTGGTCCAT
TCTTGTAAATTTCTGCCATTATGTCCTCTGGATCAGAATTGATTCTATAT
GCACTAATACTGTAGTGCTTTGAATTCCTCCAAAGCTGGTTTTTCTTGAC
GCACTTCCTCACACACTTTGGAGTAGGATATGCCGGCTCACAACCAGGGT
GGGAACAGCCAGTACTATCAAAGTAGGGATCACACTCTTCGGTAACAACA
CCATGGTGGACAAAGTATCGCCATGCAGAAATTGGATAACCCCCGTCACA
ACCATCTCCACACAAAAAGCCACAGCAGGCTAAAAGATCATTAACTGATA
GAGATAGGTTCATGCCAAAATGGATGCAGAAACGATCAGATAGCGCTTCA
ACAGCACCAAAAGCCCAACAAGAACCACAATGGCCCTGATCTAGGATCCT
ACTAATGGTGCTGCATTG
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