EY665356

Overview
NameEY665356
Unique NameEY665356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length992
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_CHICK (60S ribosomal protein L10 (Fragment) OS=Gallus gallus GN=RPL10 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.969e-47
Identity = 98/160 (61.25%), Postives = 112/160 (70.00%), Query Frame = 2
Query:   53 RCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFPGTHK 532
            RCYR  KNKPYPKSRFCRGVPDPKIRI+D+G KK  VDEFP C H+VS E E +SSEALEAARI  NKYM K  GKD FH+RVR+HPFHV+RINKMLSCAGA        G F K P+ T ARV  G+ +  S+  +      V EA+ R  F+FPG  K
Sbjct:    2 RCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGK-PQGTVARVHMGQ-VIMSIRTKAQNKEHVVEALRRAKFKFPGRQK 159          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10B_SCHPO (60S ribosomal protein L10-B OS=Schizosaccharomyces pombe GN=rpl10b PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.843e-45
Identity = 96/166 (57.83%), Postives = 112/166 (67.47%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFPGTHK 532
            M RRPARCYR  KNKPYPKSR+ R VPD KIRI+D+G K+ GVDEFP C+HLVS E E ++SEALEAARI  NKY+ K  GKD+FHLRVR HPFHV+RINKMLSCAGA          F K P    ARV  G+ L  SV  +        EA+ R  ++FPG  +
Sbjct:    1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGK-PNGLVARVNIGQVL-MSVRTKDSSRATAIEALRRCQYKFPGQQR 164          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.843e-45
Identity = 95/166 (57.23%), Postives = 112/166 (67.47%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFPGTHK 532
            M RRPARCYR  KNKPYPKSR+ R VPD KIRI+D+G K+ GVDEFP C+HLVS E E ++SEALEAARI  NKY+ K  GKD+FHLRVR HPFHV+RINKMLSCAGA          F K P    ARV  G+ +  SV  +        EA+ R  ++FPG  +
Sbjct:    1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGK-PNGLVARVNIGQ-ILMSVRTKDSSRATAIEALRRCQYKFPGQQR 164          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 9.148e-45
Identity = 93/163 (57.06%), Postives = 110/163 (67.48%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFPG 523
            MGRRPA+CYR  KNK YPKSR+CRGVP+ KIRIYD GM+K   D FP   HL+S E+E + SEALEAARI  NKYM K AGK+A+H+RVRVHPFHV RINKMLSCAGA        G F K P    ARV  G+ L  S+  +     +V  A+ R  ++F G
Sbjct:    1 MGRRPAKCYRYCKNKAYPKSRYCRGVPEAKIRIYDCGMRKLNADTFPLTYHLISMEREQIGSEALEAARINANKYMIKNAGKEAYHIRVRVHPFHVCRINKMLSCAGADRLQQGMRGAFGK-PNGLAARVRIGQPL-MSIRVKPQHEAVVVAALKRASYKFAG 161          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_ENCCU (60S ribosomal protein L10 OS=Encephalitozoon cuniculi GN=RPL10 PE=1 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.491e-42
Identity = 92/166 (55.42%), Postives = 112/166 (67.47%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFPGTHK 532
            MGRRP RCYR +  K YPKSRF RGVPD KI+I+D+G +K GV EFP  V+ +S E+EN+S+EALEAARI  NKYM K+AGKD FHLR+RV+PFHVLRINKMLSCAGA        G F K P    ARV   + +  S+  ++       EA+ R   +FPG  K
Sbjct:    1 MGRRPGRCYRYLSKKAYPKSRFNRGVPDSKIQIFDLGRRKAGVLEFPLLVNCISNERENLSAEALEAARICANKYMVKHAGKDNFHLRIRVYPFHVLRINKMLSCAGADRLQTGMRGSFGK-PYGRAARVVFNQPI-LSIRTKESFRDAAVEALRRAKNKFPGHQK 164          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_AERPE (50S ribosomal protein L10e OS=Aeropyrum pernix GN=rpl10e PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.285e-22
Identity = 66/162 (40.74%), Postives = 88/162 (54.32%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            M  RPARCY      PY +  +  GVP PKI  +++G ++  ++++     LV  E   +   ALEAARIA NKY+A   G   F+ R+RV+P HV+R NKM++ AGA    D     F K P  T ARV  G  +   V  RK     VKEA+ RG  +FP
Sbjct:    1 MPLRPARCYTHFSGPPYTRREYIHGVPPPKITRFEMGNREM-MEKWEIKGELVMLEAGQIRHNALEAARIAVNKYLATTIGDKNFYFRIRVYPHHVIRENKMMAFAGADRLQDGMRQAFGK-PVGTAARVYPGT-VVLEVWARKGDEENVKEALRRGASKFP 159          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_METKA (50S ribosomal protein L10e OS=Methanopyrus kandleri GN=rpl10e PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.856e-21
Identity = 63/162 (38.89%), Postives = 90/162 (55.56%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            M  RPAR YR+ K   Y +  + +GVPDPKI+ +D+G       +F   V LV+ E+  V+  ALEAAR+A N+Y+ K  G+  +HL++RV+P HVLR N + + AGA    +     F K P  T ARV  G+ +  +V          KEA+ R   +FP
Sbjct:    1 MVNRPARIYREWKGPAYTRREYIKGVPDPKIQQFDMG---NPAGDFDVEVSLVARERAQVTHNALEAARVAANRYLTKTVGRQNYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGK-PIGTAARVREGQRV-VTVRIDPENFEHAKEALRRAGMKFP 157          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_METJA (50S ribosomal protein L10e OS=Methanocaldococcus jannaschii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.019e-19
Identity = 58/159 (36.48%), Postives = 83/159 (52.20%), Query Frame = 2
Query:   44 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            RP RCYR +   PY +  + +GVP PK+  + +G       EFP  V+LV+     +   ALEAAR+A NKY+ K  G+  +  ++RV+P  +LR +KM + AGA    D     F K P  T ARV  G+ +  +V     K    KEA+ R   + P
Sbjct:    5 RPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMGNLSA---EFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGK-PIGTAARVKEGQAI-LTVWVNPDKFPAAKEALRRAAMKLP 158          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_STAMF (50S ribosomal protein L10e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.963e-19
Identity = 60/162 (37.04%), Postives = 81/162 (50.00%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            M  RPARCY      PY +  +  GVP PKI  +++G       ++ +   LV  E   +   ALEAAR+  NKY++   G   + L++RV+P HVLR NKM++ AGA    D     F K P  T ARV  G  +   V  RK      KEA+ R   + P
Sbjct:    1 MPLRPARCYTHFSGPPYTRREYIPGVPQPKIVKFEMGNVH---GDYDYRAELVMIEAGQIRHNALEAARVMANKYLSSTVGDQNYFLKIRVYPHHVLRENKMMAFAGADRLQDGMRQAFGK-PIGTAARVYPGT-IVMEVRVRKEHVEHAKEALRRAASKLP 157          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_PYRCJ (50S ribosomal protein L10e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 6.602e-19
Identity = 61/163 (37.42%), Postives = 84/163 (51.53%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            M  RPARCYR+IK  PY +  +  G P  +I  +D+G         F     LV+ E+  +  +ALEAAR   +KY+ KY G   ++LR+ V P HVLR N+ML+ AGA    +     F  SP    ARV  G+ + F V  +      VKEA+ R   + P
Sbjct:    1 MPARPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFTMVAKLVAEERGQIRMQALEAARQISSKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAF-GSPAGRAARVEPGQ-VIFYVEFKPEHLAHVKEALRRAASKLP 161          
The following BLAST results are available for this feature:
BLAST of EY665356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_CHICK1.969e-4761.2560S ribosomal protein L10 (Fragment) OS=Gallus gal... [more]
RL10B_SCHPO1.843e-4557.8360S ribosomal protein L10-B OS=Schizosaccharomyces... [more]
RL10A_SCHPO1.843e-4557.2360S ribosomal protein L10-A OS=Schizosaccharomyces... [more]
RL10_EUGGR9.148e-4557.0660S ribosomal protein L10 OS=Euglena gracilis GN=R... [more]
RL10_ENCCU2.491e-4255.4260S ribosomal protein L10 OS=Encephalitozoon cunic... [more]
RL10_AERPE1.285e-2240.7450S ribosomal protein L10e OS=Aeropyrum pernix GN=... [more]
RL10_METKA1.856e-2138.8950S ribosomal protein L10e OS=Methanopyrus kandler... [more]
RL10_METJA1.019e-1936.4850S ribosomal protein L10e OS=Methanocaldococcus j... [more]
RL10_STAMF2.963e-1937.0450S ribosomal protein L10e OS=Staphylothermus mari... [more]
RL10_PYRCJ6.602e-1937.4250S ribosomal protein L10e OS=Pyrobaculum calidifo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-A01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665356 ID=EY665356; Name=EY665356; organism=Citrus sinensis; type=EST; length=992bp
GAGAATAGCTGAGACCGACCCACGAACGCTCGCCATGGGAAGAAGACCGG
CAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCCAAAGTCCCGCTTT
TGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACGATGTCGGGATGAA
GAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACCTCGTCAGTTGGG
AGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCCGTATCGCTTGC
AACAAGTACATGGCCAAGTACGCTGGCAAGGATGCTTTCCATTTGCGAGT
GAGGGTGCACCCCTTCCATGTTCTGCGCATTAACAAGATGCTTTCGTGTG
CTGGGGCTGGATCGGCTCCAGACTGGAATGAGGGGGGCTTTTTGAAAAGC
CCCAAGGAAACCTGTGCTCGTGTTGCTAACGGGGAGGGCCTTTGCTTTTC
TGTCGGTTGCAGGAAAGTAAAAACCACACTGGTCAAGGAGGCCATCCACC
GGGGCTTATTTCAGTTTCCCGGGACGCACAAAGAATGATGACCACAAGGA
AAGGGGGGAATACCCAAATGCGACGCGAGGAGTTTGGGGAGGGGGGGAAC
AGAAAAGAAAGAGAATGCTCGCAAGAGAGCGGAGAAACAGAACAAACGGA
GAGAGAGGGGAGCCAAAGACATTACGGAGGAACGAGGAAAGAGAATGTGG
AGGGAGAAAAAAGAGAGTACAAGAAAGTGGAAACGGAACAAGGCAAACGA
ACAAGAGAAAGAGAAGGTAAGAACAGACAGTAAGAAAAAAAGAGTAAGAA
AAAGAAGCAAGAAACAAGACACAGCCGAAACAGAGGAAGCGAAAGACAAA
AACAAAAGAAGGGGGAGGACGAGAGAACACAGGAAAAAAAGGAAACACAA
ATAGGACGAGAAATAGACACAACCGAAGGAGGAGAAGAAACAAGAATGTA
AAAGAGAGAAACAGAAGGAGCGAAAAAAAGTGCCAGAAAAGG
back to top