EY665356

Overview
NameEY665356
Unique NameEY665356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length992
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_PYRAR (50S ribosomal protein L10e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.471e-18
Identity = 58/160 (36.25%), Postives = 81/160 (50.62%), Query Frame = 2
Query:   44 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            RPARCYR+IK  PY +  +  G P  +I  +D+G         FP    L+  E+  +  +ALEAAR   +KY+ KY G   ++LR+ V P HVLR N+ML+ AGA    +     F  SP    ARV  G+ + F    +      +KEA  R   + P
Sbjct:    4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARATFPMVAKLIVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVIPHHVLRENRMLAMAGADRLQEGMRLAF-GSPAGRAARVEPGQ-ILFYAEFKPEHLAHIKEAFRRAASKLP 161          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_HYPBU (50S ribosomal protein L10e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.921e-18
Identity = 59/167 (35.33%), Postives = 89/167 (53.29%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNK-----PYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            M ++PARCY + ++K     PY +  +  GVP PKI+ + +G       ++ + V +   E+  +   ALEAAR+A +KY++   G   +  RVRV+P HVLR NKM++ AGA    +     F K P  T ARV  G+ +   V  +K      KEA+ RG  + P
Sbjct:    1 MPQKPARCYTKRRSKAFSGPPYTRKEYIHGVPPPKIQKFVMGNPH---GDYDYIVEVYVTERGQIRHNALEAARVAVHKYLSTTIGDQNYFFRVRVYPHHVLRENKMMAFAGADRLQEGMRQAFGK-PVGTAARVYPGQAV-LEVRVKKEHLDHAKEALRRGASKLP 162          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_PYRIL (50S ribosomal protein L10e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.276e-18
Identity = 59/160 (36.88%), Postives = 82/160 (51.25%), Query Frame = 2
Query:   44 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            RPARCYR+IK  PY +  +  G P  +I  +D+G+        F     LV  E+  +  +ALEAAR    KY++KY G   ++LR+ V P HVLR N+ML+ AGA    +     F  SP    ARV  G+ + F    R      +KEA+ R   + P
Sbjct:    4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGVTSAAARAAFSMVAKLVVEERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAF-GSPAGRAARVEPGQ-VIFYAEFRPEHIAHIKEALRRAASKLP 161          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_METMP (50S ribosomal protein L10e OS=Methanococcus maripaludis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.276e-18
Identity = 59/162 (36.42%), Postives = 83/162 (51.23%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            M  RPARCYR I+ + Y +  + R VP PK+  Y +G       EFP  V LVS     +   ALE++RIA NKY+    G+  +   +RV+P  +LR NKM + AGA    D     F K+   T A+V  G+ +  ++G    K    KEA+ R   + P
Sbjct:    1 MALRPARCYRTIERRSYTRKEYVRAVPQPKVVHYVMGNPSA---EFPVQVQLVSKSDILIRHNALESSRIAGNKYILSECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKA-VGTAAKVKKGQEI-ITIGVNPEKFYAAKEALRRCSMKLP 157          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_PYRAE (50S ribosomal protein L10e OS=Pyrobaculum aerophilum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.279e-18
Identity = 63/174 (36.21%), Postives = 87/174 (50.00%), Query Frame = 2
Query:   44 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGV-DEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP-GTHKE**PQGKGG 559
            RPARCY++IK  PY +  +  G P  +I  +D+G         F     LV  E+  +  +ALEAAR   +KY+ KY G   ++LR+ V P HVLR N+ML+ AGA    +     F  SP    ARV  G+ L F    +      +KEA+ R   + P  T     P+G GG
Sbjct:    4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARTAFTMTAKLVVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAF-GSPAGRAARVEPGQVL-FYAEFKPEHLPHIKEALRRAASKLPLPTRIVIEPKGNGG 175          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_ARCFU (50S ribosomal protein L10e OS=Archaeoglobus fulgidus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.279e-18
Identity = 55/162 (33.95%), Postives = 88/162 (54.32%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            M R+PAR +R+++ +PY ++ +  G P  ++R++D+G K     +FP  + LV+ E   +   ALEAAR+  NKY+++ AG   + L++R+ P H+LR +KM   AGA          F K P    ARV  G  +  SV  +     + KEA+ R   + P
Sbjct:    1 MARKPARMWRRLE-RPYTRTEYIDGAPGTRVRMFDMGNKSA---DFPVMLTLVAKEAVQIRENALEAARVVANKYVSRRAGASNYKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGK-PVGRAARVKPGTKI-MSVWVKPEHFEIAKEALRRAAMKMP 156          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_THENV (50S ribosomal protein L10e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.245e-17
Identity = 57/160 (35.62%), Postives = 81/160 (50.62%), Query Frame = 2
Query:   44 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            RPARCY++IK  PY +  +  G P  +I  +D+G         FP    LV  E+  +  +ALEAAR    KY++KY G   ++LR+   P HVLR N+ML+ AGA    +     F  SP    ARV  G+ + F    +      +KEA+ R   + P
Sbjct:    4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFPLVAKLVVQERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLEAVPHHVLRENRMLAMAGADRLQEGMRLAF-GSPAGRAARVEAGQ-VIFYAEFKPEHVAHMKEALRRASTKLP 161          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_METM7 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.245e-17
Identity = 57/162 (35.19%), Postives = 83/162 (51.23%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            M  RPARCYR  + + Y +  + R VP PK+  Y +G       EFP  V L+S     +   ALE++RIA NKY+ +  G+  +   +RV+P  +LR NKM + AGA    D     F K+   T A+V  G+ +  ++G    K    KEA+ R   + P
Sbjct:    1 MALRPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKA-VGTAAKVKKGQEI-ITIGVNPEKFYAAKEALRRCSMKLP 157          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_METM6 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.245e-17
Identity = 57/162 (35.19%), Postives = 83/162 (51.23%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            M  RPARCYR  + + Y +  + R VP PK+  Y +G       EFP  V L+S     +   ALE++RIA NKY+ +  G+  +   +RV+P  +LR NKM + AGA    D     F K+   T A+V  G+ +  ++G    K    KEA+ R   + P
Sbjct:    1 MALRPARCYRTTERRSYTRKEYVRAVPQPKVVHYVMGNSSV---EFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKA-VGTAAKVKKGQEI-ITIGVNPEKFYAAKEALRRCSMKLP 157          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_TOBAC (60S ribosomal protein L10 (Fragment) OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.124e-17
Identity = 52/95 (54.74%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  248 CNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFPGTHK 532
            C    A  AGKDAFHLRVRVHPFHVLRINKMLSCAGA        G F K P+  CARVA G+ L  SV C+       +EA+ R  F+FP   K
Sbjct:    1 CGGCEAGSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGK-PQGVCARVAIGQVL-LSVRCKDGNANHAQEALRRAKFKFPRRQK 93          
The following BLAST results are available for this feature:
BLAST of EY665356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_PYRAR1.471e-1836.2550S ribosomal protein L10e OS=Pyrobaculum arsenati... [more]
RL10_HYPBU1.921e-1835.3350S ribosomal protein L10e OS=Hyperthermus butylic... [more]
RL10_PYRIL3.276e-1836.8850S ribosomal protein L10e OS=Pyrobaculum islandic... [more]
RL10_METMP3.276e-1836.4250S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_PYRAE4.279e-1836.2150S ribosomal protein L10e OS=Pyrobaculum aerophil... [more]
RL10_ARCFU4.279e-1833.9550S ribosomal protein L10e OS=Archaeoglobus fulgid... [more]
RL10_THENV1.245e-1735.6350S ribosomal protein L10e OS=Thermoproteus neutro... [more]
RL10_METM71.245e-1735.1950S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_METM61.245e-1735.1950S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_TOBAC2.124e-1754.7460S ribosomal protein L10 (Fragment) OS=Nicotiana ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-A01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665356 ID=EY665356; Name=EY665356; organism=Citrus sinensis; type=EST; length=992bp
GAGAATAGCTGAGACCGACCCACGAACGCTCGCCATGGGAAGAAGACCGG
CAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCCAAAGTCCCGCTTT
TGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACGATGTCGGGATGAA
GAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACCTCGTCAGTTGGG
AGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCCGTATCGCTTGC
AACAAGTACATGGCCAAGTACGCTGGCAAGGATGCTTTCCATTTGCGAGT
GAGGGTGCACCCCTTCCATGTTCTGCGCATTAACAAGATGCTTTCGTGTG
CTGGGGCTGGATCGGCTCCAGACTGGAATGAGGGGGGCTTTTTGAAAAGC
CCCAAGGAAACCTGTGCTCGTGTTGCTAACGGGGAGGGCCTTTGCTTTTC
TGTCGGTTGCAGGAAAGTAAAAACCACACTGGTCAAGGAGGCCATCCACC
GGGGCTTATTTCAGTTTCCCGGGACGCACAAAGAATGATGACCACAAGGA
AAGGGGGGAATACCCAAATGCGACGCGAGGAGTTTGGGGAGGGGGGGAAC
AGAAAAGAAAGAGAATGCTCGCAAGAGAGCGGAGAAACAGAACAAACGGA
GAGAGAGGGGAGCCAAAGACATTACGGAGGAACGAGGAAAGAGAATGTGG
AGGGAGAAAAAAGAGAGTACAAGAAAGTGGAAACGGAACAAGGCAAACGA
ACAAGAGAAAGAGAAGGTAAGAACAGACAGTAAGAAAAAAAGAGTAAGAA
AAAGAAGCAAGAAACAAGACACAGCCGAAACAGAGGAAGCGAAAGACAAA
AACAAAAGAAGGGGGAGGACGAGAGAACACAGGAAAAAAAGGAAACACAA
ATAGGACGAGAAATAGACACAACCGAAGGAGGAGAAGAAACAAGAATGTA
AAAGAGAGAAACAGAAGGAGCGAAAAAAAGTGCCAGAAAAGG
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