EY665356

Overview
NameEY665356
Unique NameEY665356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length992
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_METPE (50S ribosomal protein L10e OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.683e-14
Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            M R+P + YR +  K Y + ++  GVP  KI  +++G   +   EFP  + L   E   +   ALEAARIA N+ M    G+  FH ++R +P HVLR NK  + AGA    +     F K+   T ARV   + + F+V   +      K+A+  G ++ P
Sbjct:    1 MVRKPGKMYRNLAKKAYTRRKYMGGVPGSKIVQFEMGNLSQ---EFPVEISLEVLESCQIRHTALEAARIAINRKMMDQVGRANFHFKIRTYPHHVLRENKQATGAGADRVSEGMRMAFGKA-VGTAARVQPKQKV-FTVYTNEQYIEKSKDALRHGGYKLP 157          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_HALSA (50S ribosomal protein L10e OS=Halobacterium salinarium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.683e-14
Identity = 48/156 (30.77%), Postives = 79/156 (50.64%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHR 502
            M  +PA  YR+I    Y +  +  G+P  KI  + +G  +   D++P  + LV  E+  +   +LEAAR++ N+++ K  G+  + +++R  P  ++R NK  + AGA    D     F   P  T AR+  G+ L F+  C   +   VKEA  R
Sbjct:    1 MSEKPASMYRKIDKPSYTRRDYVTGIPGSKIAQHKMGDLQADADDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAF-GVPVGTAARIQPGDQL-FTAYCEVEQAAAVKEAFRR 154          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_HALS3 (50S ribosomal protein L10e OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.683e-14
Identity = 48/156 (30.77%), Postives = 79/156 (50.64%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHR 502
            M  +PA  YR+I    Y +  +  G+P  KI  + +G  +   D++P  + LV  E+  +   +LEAAR++ N+++ K  G+  + +++R  P  ++R NK  + AGA    D     F   P  T AR+  G+ L F+  C   +   VKEA  R
Sbjct:    1 MSEKPASMYRKIDKPSYTRRDYVTGIPGSKIAQHKMGDLQADADDYPVQISLVPQEECQLRHGSLEAARLSANRHLIKELGEGNYKMQLRKFPHQIIRENKQATGAGADRVSDGMRQAF-GVPVGTAARIQPGDQL-FTAYCEVEQAAAVKEAFRR 154          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_HALMA (50S ribosomal protein L10e OS=Haloarcula marismortui GN=rpl10e PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.198e-14
Identity = 52/157 (33.12%), Postives = 78/157 (49.68%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDA-FHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHR 502
            M  +PA  YR I    Y +  +  G+P  KI  + +G K+K  D++P  + L+  E   +   +LEA+R++ N+++ K  G++  + + +R  P  VLR NK  + AGA    D     F K    T ARV  GE L F+  C       VKEA  R
Sbjct:    1 MSDKPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEEGDYKMTLRKFPHQVLRENKQATGAGADRVSDGMRAAFGKI-VGTAARVQAGEQL-FTAYCNVEDAEHVKEAFRR 155          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_METTH (50S ribosomal protein L10e OS=Methanobacterium thermoautotrophicum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.870e-14
Identity = 49/148 (33.11%), Postives = 75/148 (50.68%), Query Frame = 2
Query:   77 KPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            + Y +  + + +P  KI  YD+G       EFP  + +       ++  ALEAARIA N+YM + AG+  +HL++RV+P H++R N M + AGA    D     F K P  T A V   + +  ++   K      KEA+ R   +FP
Sbjct:    3 RAYTRREYIKKIPGSKIVQYDMGNLSA---EFPISLSVAVKAPTQITHNALEAARIASNRYMQRRAGRMGYHLKIRVYPHHIVRENPMATGAGADRVQDGMRKAFGK-PVSTVALVKKNQKI-ITIETNKKNFKDAKEALRRAAMKFP 145          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_PYRKO (50S ribosomal protein L10e OS=Pyrococcus kodakaraensis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.896e-14
Identity = 56/167 (33.53%), Postives = 80/167 (47.90%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARV----------ANGEGLCFSVGC-RKVKTTLVKEAIHR 502
            MG RPA+  R +    Y +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   A    +     F K P    ARV           NG+ L F++G   + K  L   A +R
Sbjct:    1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGK-PIGLAARVRKDQKILTVWVNGQHLKFALGAMHRAKMKLPYSAYYR 163          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_METAC (50S ribosomal protein L10e OS=Methanosarcina acetivorans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.896e-14
Identity = 52/158 (32.91%), Postives = 81/158 (51.27%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAI-HRG 505
            M R+P   YR ++ + + + ++  GVP  ++  YD+G K      FP  + L+  EK  +   ALEAARI  N+++    GK  F++++RV+P  V+R NK  + AGA          F K+   T ARV   + + F+V   K      KEA+ H G
Sbjct:    1 MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKAN--TSFPVKISLIVEEKCQIRHTALEAARITANRHLVADTGKMGFYMKLRVYPHEVIRENKQATGAGADRVSSGMRRAFGKN-VGTAARVKPMQKI-FTVAVEKQNFKAAKEALWHAG 154          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_PICTO (50S ribosomal protein L10e OS=Picrophilus torridus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.394e-14
Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFP 520
            M  +PAR Y +I    Y +  F  GVP PKI  +  G +KK   +F   + LV+ E   +   ALEAAR++ N+ +   AG D + L++R +P  V+R +KM + AGA          F + P  T ARV  G+ +      R     L+K+A+H+   + P
Sbjct:    1 MVTKPARMYTRITGPAYTRKEFMGGVPYPKITTFIQGNQKK---DFEIEMMLVAEEACQIRHTALEAARVSVNRKLLDAAGSDNYFLQIRPYPHQVIREHKMATGAGADRISSGMRAAFGR-PVGTAARVYPGQIIMVGRVDRN-NAKLLKDALHKASIKLP 157          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_METHJ (50S ribosomal protein L10e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.394e-14
Identity = 54/166 (32.53%), Postives = 81/166 (48.80%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKMLSCAGAGSAPDWNEGGFLKSPKETCARVANGEGLCFSVGCRKVKTTLVKEAIHRGLFQFPG-TH 529
            M R+P   YR +  K Y +  +  G+P  K+  +D+G       EFP  V LV  E   +   ALEAAR++ N+ + K  G+  +HL++R +P HVLR NK  + AGA          F K+   T AR    + + F+V         +K+A+  G  + P  TH
Sbjct:    1 MVRKPNSMYRNLAKKAYTRKEYMGGIPGVKVVHFDMGNL---TSEFPMEVSLVVDESCQIRHSALEAARMSINRKLNKELGRMNYHLKLRTYPHHVLRENKQATGAGADRVSQGMRLAFGKA-VGTAARCQQNQKI-FTVFSNPASVEKIKDALRHGGHKLPSPTH 161          
BLAST of EY665356 vs. ExPASy Swiss-Prot
Match: RL10_THEON (50S ribosomal protein L10e OS=Thermococcus onnurineus (strain NA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.091e-13
Identity = 40/102 (39.22%), Postives = 57/102 (55.88%), Query Frame = 2
Query:   35 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKYAGKDAFHLRVRVHPFHVLRINKM 340
            MG RPA+  R +    Y +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M
Sbjct:    1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFQYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPM 99          
The following BLAST results are available for this feature:
BLAST of EY665356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL10_METPE1.683e-1433.3350S ribosomal protein L10e OS=Methanosphaerula pal... [more]
RL10_HALSA1.683e-1430.7750S ribosomal protein L10e OS=Halobacterium salina... [more]
RL10_HALS31.683e-1430.7750S ribosomal protein L10e OS=Halobacterium salina... [more]
RL10_HALMA2.198e-1433.1250S ribosomal protein L10e OS=Haloarcula marismort... [more]
RL10_METTH2.870e-1433.1150S ribosomal protein L10e OS=Methanobacterium the... [more]
RL10_PYRKO4.896e-1433.5350S ribosomal protein L10e OS=Pyrococcus kodakarae... [more]
RL10_METAC4.896e-1432.9150S ribosomal protein L10e OS=Methanosarcina aceti... [more]
RL10_PICTO6.394e-1433.3350S ribosomal protein L10e OS=Picrophilus torridus... [more]
RL10_METHJ6.394e-1432.5350S ribosomal protein L10e OS=Methanospirillum hun... [more]
RL10_THEON1.091e-1339.2250S ribosomal protein L10e OS=Thermococcus onnurin... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-007-A01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665356 ID=EY665356; Name=EY665356; organism=Citrus sinensis; type=EST; length=992bp
GAGAATAGCTGAGACCGACCCACGAACGCTCGCCATGGGAAGAAGACCGG
CAAGGTGTTACCGCCAAATCAAGAACAAACCCTACCCAAAGTCCCGCTTT
TGCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACGATGTCGGGATGAA
GAAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACCTCGTCAGTTGGG
AGAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCCGTATCGCTTGC
AACAAGTACATGGCCAAGTACGCTGGCAAGGATGCTTTCCATTTGCGAGT
GAGGGTGCACCCCTTCCATGTTCTGCGCATTAACAAGATGCTTTCGTGTG
CTGGGGCTGGATCGGCTCCAGACTGGAATGAGGGGGGCTTTTTGAAAAGC
CCCAAGGAAACCTGTGCTCGTGTTGCTAACGGGGAGGGCCTTTGCTTTTC
TGTCGGTTGCAGGAAAGTAAAAACCACACTGGTCAAGGAGGCCATCCACC
GGGGCTTATTTCAGTTTCCCGGGACGCACAAAGAATGATGACCACAAGGA
AAGGGGGGAATACCCAAATGCGACGCGAGGAGTTTGGGGAGGGGGGGAAC
AGAAAAGAAAGAGAATGCTCGCAAGAGAGCGGAGAAACAGAACAAACGGA
GAGAGAGGGGAGCCAAAGACATTACGGAGGAACGAGGAAAGAGAATGTGG
AGGGAGAAAAAAGAGAGTACAAGAAAGTGGAAACGGAACAAGGCAAACGA
ACAAGAGAAAGAGAAGGTAAGAACAGACAGTAAGAAAAAAAGAGTAAGAA
AAAGAAGCAAGAAACAAGACACAGCCGAAACAGAGGAAGCGAAAGACAAA
AACAAAAGAAGGGGGAGGACGAGAGAACACAGGAAAAAAAGGAAACACAA
ATAGGACGAGAAATAGACACAACCGAAGGAGGAGAAGAAACAAGAATGTA
AAAGAGAGAAACAGAAGGAGCGAAAAAAAGTGCCAGAAAAGG
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