EY665344

Overview
NameEY665344
Unique NameEY665344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC_HUMAN (Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 3.211e-37
Identity = 88/171 (51.46%), Postives = 114/171 (66.67%), Query Frame = 2
Query:  158 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK--NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            K L  PL+  D E+ +II+ E  RQ  GLELI SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E+LC KRAL+ ++LDP  WGVNVQ  SGSP+NF+V   + +    ++G   L  P GG L+    T+ KK  A +IFF++M YK+   T GYI  DQL
Sbjct:   20 KMLAQPLKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG---LDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDT-GYINYDQL 186          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYM_CANAL (Serine hydroxymethyltransferase, mitochondrial OS=Candida albicans GN=SHM1 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 4.193e-37
Identity = 88/170 (51.76%), Postives = 111/170 (65.29%), Query Frame = 2
Query:  164 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSN---FSV*HCIGKNLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            ++  ++ VDPE+ADI+  E+ RQ   + LIPSENFTS +VM  +GS M NKYSEGYPG RYYGGNE ID AE+LC KRALE F LDP +WGVNVQ LSG+P+N   +S    +G  +M     L  P GG LS   QT T K    + +F+TM Y++  +T G I  D L
Sbjct:   35 ISKSVQDVDPEMADILNQERTRQKNSITLIPSENFTSKAVMDLLGSEMQNKYSEGYPGERYYGGNEIIDKAEALCQKRALEAFGLDPSQWGVNVQPLSGAPANLYAYSAILEVGDRIM----GLDLPHGGHLSHGYQTKTTKISYISKYFQTMPYRLNEET-GIIDYDTL 199          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=shm2 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 4.193e-37
Identity = 89/171 (52.05%), Postives = 106/171 (61.99%), Query Frame = 2
Query:  158 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK--NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            K L APL   DP +  I+E EK+RQ + + LI SENFTS +VM A+GS+M NKYSEGYPGARYYGGNE+ID AE LC  RALE F LD  KWGVNVQ  SGSP+N      + K  + ++G   L  P GG LS    T  K   A + +F TM Y +  K  G I  D L
Sbjct:   12 KLLKAPLAECDPTVYKILESEKSRQKESIALIASENFTSRAVMDALGSIMQNKYSEGYPGARYYGGNEFIDQAERLCQTRALEAFHLDGEKWGVNVQPHSGSPANLQAYQAVMKPHDRLMG---LDLPHGGHLSHGFSTPQKAISAVSTYFSTMPYNVN-KETGIIDYDSL 178          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 5.477e-37
Identity = 88/171 (51.46%), Postives = 113/171 (66.08%), Query Frame = 2
Query:  158 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK--NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            K L+ PL+  D E+  II+ E  RQ  GLELI SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E LC KRAL+ + LDP  WGVNVQ  SGSP+NF+V   + +    ++G   L  P GG L+    T+ KK  A +IFF++M YK+  +T GYI  DQL
Sbjct:   14 KMLSQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRYYGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG---LDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVYPET-GYINYDQL 180          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC_RABIT (Serine hydroxymethyltransferase, cytosolic OS=Oryctolagus cuniculus GN=SHMT1 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 7.153e-37
Identity = 88/171 (51.46%), Postives = 114/171 (66.67%), Query Frame = 2
Query:  158 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK--NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            + L  PL+  D E+ DII+ E  RQ  GLELI SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E+LC KRAL+ + LDP  WGVNVQ  SGSP+NF+V   + +    ++G   L  P GG L+    T+ KK  A +IFF++MAYK+   T GYI  D+L
Sbjct:   20 QMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG---LDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDT-GYIDYDRL 186          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 9.342e-37
Identity = 87/171 (50.88%), Postives = 112/171 (65.50%), Query Frame = 2
Query:  158 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK--NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            K L  PL+  D E+ +II+ E  RQ  GLEL  SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E+LC KRAL+ ++LDP  WGVNVQ  SGSP+NF+V   + +    ++G   L  P GG L+    T  KK  A +IFF++M YK+   T GYI  DQL
Sbjct:   20 KMLAQPLKDSDVEVYNIIKKESNRQRVGLELFASENFASQAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG---LDLPDGGHLTHGFMTGKKKISATSIFFESMPYKVNPDT-GYINYDQL 186          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.220e-36
Identity = 84/163 (51.53%), Postives = 111/163 (68.10%), Query Frame = 2
Query:  167 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK--NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYI 649
            N  +   DPEI D++  EK RQ+ GLELI SENFTS +VM+++GS  TNKY+EG PGARYYGGNE +D  E+LC KRALETF L+P +WGVNVQ  SGS +NF+    + K  + ++G   L  P GG L+   QT+ KK  A +IFF++M Y++     GY+
Sbjct:   31 NRSVSESDPEIYDLMMKEKQRQFTGLELIASENFTSRAVMESIGSCFTNKYAEGLPGARYYGGNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMG---LDLPSGGHLTHGYQTDKKKISATSIFFESMPYQV--NETGYV 188          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 2.718e-36
Identity = 88/171 (51.46%), Postives = 112/171 (65.50%), Query Frame = 2
Query:  158 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK--NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            K L  PL+  D E+ +II+ E  RQ  GLELI SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E LC KRAL+ + LDP  WGVNVQ  SGSP+NF+V   + +    ++G   L  P GG L+    T+ KK  A +IFF++M YK+   T GYI  DQL
Sbjct:   20 KMLAQPLKDNDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELEVLCQKRALQVYGLDPECWGVNVQPYSGSPANFAVYTALVEPHGRIMG---LDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDT-GYINYDQL 186          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 2.301e-35
Identity = 87/171 (50.88%), Postives = 111/171 (64.91%), Query Frame = 2
Query:  158 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK--NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            K L  PL+  D E+ +II+ E  RQ  GLELI SENF S +V++A+GS + NKYSEGYPG RYYGG E+ID  E LC KRAL+ + LD   WGVNVQ  SGSP+NF+V   + +    ++G   L  P GG L+    T+ KK  A +IFF++M YK+   T GYI  DQL
Sbjct:   20 KMLAQPLKDNDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELEVLCQKRALQVYGLDSQCWGVNVQPYSGSPANFAVYTALVEPHGRIMG---LDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDT-GYINYDQL 186          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYM_NEUCR (Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa GN=NCU05805 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.491e-34
Identity = 82/153 (53.59%), Postives = 107/153 (69.93%), Query Frame = 2
Query:  212 EHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCI--GKNLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            + EK RQ + + LIPSENFTS +V+ A+GS M NKYSEGYPGARYYGGNE+ID +E LC  RALETF LDP +WGVNVQ+LSG+P+N  V   +    + ++G   L  P GG LS   QT TKK    + +F+T+ Y+++ KT GYI  ++L
Sbjct:   67 QKEKQRQKQFINLIPSENFTSQAVLDALGSPMQNKYSEGYPGARYYGGNEFIDASERLCQDRALETFGLDPKEWGVNVQALSGAPANLYVYSALMDTHDRLMG---LDLPHGGHLSHGYQTPTKKISFISKYFETLPYRLDEKT-GYIDYNKL 215          
The following BLAST results are available for this feature:
BLAST of EY665344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_HUMAN3.211e-3751.46Serine hydroxymethyltransferase, cytosolic OS=Homo... [more]
GLYM_CANAL4.193e-3751.76Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_SCHPO4.193e-3752.05Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYC_MOUSE5.477e-3751.46Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYC_RABIT7.153e-3751.46Serine hydroxymethyltransferase, cytosolic OS=Oryc... [more]
GLYC_PONAB9.342e-3750.88Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYC2_DICDI1.220e-3651.53Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC_SHEEP2.718e-3651.46Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYC_BOVIN2.301e-3550.88Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYM_NEUCR1.491e-3453.59Putative serine hydroxymethyltransferase, mitochon... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665344 ID=EY665344; Name=EY665344; organism=Citrus sinensis; type=EST; length=1003bp
GAGAACAAAAATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCC
TCGACAAACCCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATG
TCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCAC
TTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTG
CTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTC
ATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTC
TGTCATGACCAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATG
GAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCCAAAACGAGCT
CTGGAAACATTTCGGTTGGATCCTNGAAAATGGGGAGTGAATGTGCAGTC
TCTGTCTGGATCTCCCTCTAATTTTTCAGTCTAACACTGCATTGGTAAAA
ACCTCATGATAGGATCATGGCCCTTGATCTTCCCCATGGGGGGCATCCTC
TCCCCGGCTATCCAAACAAATACCAAAAAAAAACCTGCAGGGGCCATATT
TTTTAAAACAATGGCCTACAAAATTGAATGAAAAACCCCGGGTTATATAA
AATAAGACCAATTGGGAAAAAAAGGGCCCCCCCCCTTTCCGGGCCCAAAA
TTAAATTGTTTGCGTGGGGGCAAGGGGTTTTTGCCCCAATTTGTTTAAAT
TAAAAAACCTTTTTTCCCAGGGGTTTGGGACAAAAAAAAAAAAAAAACCT
AAAATGGTTGGGGAAAAAATAGGGGCAAACACTTATAGGGGGTTTGGGGG
TGGGGCGCGGGGGGGGGGCCCCCCCCCCTCCCCCCCCTTTTTTTGAGAAA
ATGAGAGAAAAAAAGGTTGTGGGGGCCCCCCCCACCAAAAAACTCCCACA
ACAAAAAAATCTCCTCTTTCTTGTGGGGGGGCGGCCCGCCACGAGGAGGG
GGG
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