EY665344

Overview
NameEY665344
Unique NameEY665344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC_CANAL (Serine hydroxymethyltransferase, cytosolic OS=Candida albicans GN=SHM2 PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 3.323e-34
Identity = 83/165 (50.30%), Postives = 108/165 (65.45%), Query Frame = 2
Query:  176 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK--NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            L+  DPE+  II+ E  RQ   + LI SENFT+ +V  A+G+ M NKYSEGYPGARYYGGNE+I   E LC +RAL+ F L P KWGVNVQ+LSGSP+N  V   I K    ++G   L  P GG LS   QT+++K  A + +F+TM Y+++ +T G I  D L
Sbjct:   18 LKDTDPEVDQIIKDEIDRQQHSIVLIASENFTTTAVFDALGTPMCNKYSEGYPGARYYGGNEHIHRMELLCQERALKAFGLTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMG---LDLPHGGHLSHGYQTDSRKISAVSTYFETMPYRVDLET-GLIDYDML 178          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC_YEAST (Serine hydroxymethyltransferase, cytosolic OS=Saccharomyces cerevisiae GN=SHM2 PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 7.402e-34
Identity = 82/171 (47.95%), Postives = 108/171 (63.16%), Query Frame = 2
Query:  158 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK--NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            K + + L   DPE+  II+ E  RQ   ++LI SENFTS SV  A+G+ ++NKYSEGYPGARYYGGNE+ID  E LC +RAL+ F + P KWGVNVQ+LSGSP+N  V   I K    ++G   L  P GG LS    T  +K  A + +F++  Y++  +T G I  D L
Sbjct:   11 KLITSHLVDTDPEVDSIIKDEIERQKHSIDLIASENFTSTSVFDALGTPLSNKYSEGYPGARYYGGNEHIDRMEILCQQRALKAFHVTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMG---LYLPDGGHLSHGYATENRKISAVSTYFESFPYRVNPET-GIIDYDTL 177          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC_CANGA (Serine hydroxymethyltransferase, cytosolic OS=Candida glabrata GN=SHM2 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 7.402e-34
Identity = 80/171 (46.78%), Postives = 107/171 (62.57%), Query Frame = 2
Query:  158 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK--NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            K ++  L   DPE+  II+ E  RQ   ++LI SENFT+ SV  A+G+ + NKYSEGYPGARYYGGNE+ID  E LC +RALE F + P +WGVNVQ+LSGSP+N  V   + K    ++G   L  P GG LS    T  +K  A + +F++  Y++  +T G I  D L
Sbjct:   11 KMVSGHLSETDPEVEQIIKDEVDRQKHSIDLIASENFTTTSVFDALGTPLCNKYSEGYPGARYYGGNEHIDRIERLCQQRALEAFHVTPDRWGVNVQTLSGSPANLQVYQALMKPHERLMG---LYLPDGGHLSHGYATENRKISAVSTYFESFPYRVNPET-GIIDYDTL 177          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.263e-33
Identity = 82/171 (47.95%), Postives = 109/171 (63.74%), Query Frame = 2
Query:  158 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK--NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            K +++ L   DPE+  II+ E  RQ   + LI SEN TS +V  A+G+ M NKYSEGYPGARYYGGN++ID  E LC +RALE F + P +WGVNVQSLSGSP+N  V   + K    ++G   L  P GG LS   QT T+K  A + +F++  Y+++ +T G I  D L
Sbjct:   11 KLISSHLSESDPEVDAIIKDEIDRQKHSIVLIASENLTSTAVFDALGTPMCNKYSEGYPGARYYGGNQHIDRMELLCQRRALEAFHVTPDRWGVNVQSLSGSPANLQVYQALMKPHERLMG---LHLPDGGHLSHGYQTETRKISAVSTYFESFPYRVDPET-GIIDYDTL 177          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYM_KLULA (Serine hydroxymethyltransferase, mitochondrial OS=Kluyveromyces lactis GN=SHM1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.649e-33
Identity = 79/154 (51.30%), Postives = 102/154 (66.23%), Query Frame = 2
Query:  185 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCI--GKNLMIGSWPLIFPMGGILSPAIQTNTKKKPAG-AIFFKTMAYKIE*KT 637
            +DPE+ DI+  E+ RQ   + LIPSENFTS SVM  +GS M NKYSEGYPG RYYGGN++IDMAESLC KRALE + LDP  WGVNVQ LSG+P+N      +    + ++G   L  P GG LS   Q  +  K +  + +F+TM Y ++ +T
Sbjct:   44 IDPEMYDILTKERKRQKHSITLIPSENFTSKSVMDLLGSEMQNKYSEGYPGERYYGGNQFIDMAESLCQKRALELYNLDPQLWGVNVQPLSGAPANLYAYSAVMETNDRLMG---LDLPHGGHLSHGYQLPSGTKISYISKYFQTMPYHVDSQT 194          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.649e-33
Identity = 79/161 (49.07%), Postives = 108/161 (67.08%), Query Frame = 2
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCI--GKNLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            DPE+ ++++ EK RQ +GLELI SENF S + ++A+GS + NKYSEGYPG RYYGG E +D  E LC +RALE F LDP +WGVNVQ  SGSP+N +V   +    + ++G   L  P GG L+    ++ K+  A +IFF++M YK+  KT G I  +QL
Sbjct:   53 DPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMG---LDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKT-GLIDYNQL 209          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYM_YEAST (Serine hydroxymethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=SHM1 PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 6.266e-33
Identity = 84/172 (48.84%), Postives = 108/172 (62.79%), Query Frame = 2
Query:  164 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSN---FSV*HCIGKNLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAI--FFKTMAYKIE*KTPGYIK*DQL 664
            ++ P+   DPE+ DI++ E+ RQ   + LIPSENFTS +VM  +GS + NKYSEGYPG RYYGGNE ID +ESLC  RALE + LDP KWGVNVQ LSG+P+N   +S    +G+ LM     L  P GG LS   Q  +   P   I  +F++M Y ++  T G I  D L
Sbjct:   29 VSKPVSEGDPEMFDILQQERHRQKHSITLIPSENFTSKAVMDLLGSELQNKYSEGYPGERYYGGNEIIDKSESLCQARALELYGLDPAKWGVNVQPLSGAPANLYVYSAIMNVGERLM----GLDLPDGGHLSHGYQLKS-GTPISFISKYFQSMPYHVD-HTTGLIDYDNL 194          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.266e-33
Identity = 78/161 (48.45%), Postives = 106/161 (65.84%), Query Frame = 2
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCI--GKNLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            DPE+ +++  EK RQ +GLELI SENF S + ++A+GS + NKYSEGYPG RYYGG E +D  E LC +RALE F LDP +WGVNVQ  SGSP+N +    +    + ++G   L  P GG L+    ++ K+  A +IFF++M YK+  +T G I  DQL
Sbjct:   53 DPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMG---LDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPQT-GLIDYDQL 209          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYM_CANGA (Serine hydroxymethyltransferase, mitochondrial OS=Candida glabrata GN=SHM1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.823e-32
Identity = 83/167 (49.70%), Postives = 107/167 (64.07%), Query Frame = 2
Query:  176 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSN---FSV*HCIGKNLMIGSWPLIFPMGGILSPAIQTNTKKKPAG-AIFFKTMAYKIE*KTPGYIK*DQL 664
            ++ VDPE+  I+  E++RQ   + LIPSENFTS +VM  +GS M NKYSEGYPG RYYGGN++ID AESLC  RAL+ + LDP KWGVNVQ+LSG+P+N   +S    +G  LM     L  P GG LS   Q  +  K +  + +F TM Y +  +T G I  D L
Sbjct:   27 VQEVDPEMFRILSDERSRQKHSVTLIPSENFTSKAVMDLLGSEMQNKYSEGYPGERYYGGNQFIDKAESLCQARALDLYGLDPEKWGVNVQALSGAPANLYAYSAVMEVGDRLM----GLDLPHGGHLSHGYQLPSGTKISYISKYFNTMPYHVNTET-GIIDYDTL 188          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.823e-32
Identity = 81/161 (50.31%), Postives = 103/161 (63.98%), Query Frame = 2
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCI--GKNLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KTPGYIK*DQL 664
            DP++A+I++ E  RQ + + LI SEN TS +V  A+GS M+NKYSEG PGARYYGGN++ID  E LC  RALE F LDP +WGVNVQ LSGSP+N  V   I      ++G   L  P GG LS   QT  +K  A + +F+TM Y++   T G I  D L
Sbjct:   22 DPQVAEIMKKEVQRQRESIILIASENVTSRAVFDALGSPMSNKYSEGLPGARYYGGNQHIDEIEVLCQNRALEAFHLDPKQWGVNVQCLSGSPANLQVYQAIMPVHGRLMG---LDLPHGGHLSHGYQTPQRKISAVSTYFETMPYRVNIDT-GLIDYDTL 178          
The following BLAST results are available for this feature:
BLAST of EY665344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_CANAL3.323e-3450.30Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_YEAST7.402e-3447.95Serine hydroxymethyltransferase, cytosolic OS=Sacc... [more]
GLYC_CANGA7.402e-3446.78Serine hydroxymethyltransferase, cytosolic OS=Cand... [more]
GLYC_ASHGO1.263e-3347.95Serine hydroxymethyltransferase, cytosolic OS=Ashb... [more]
GLYM_KLULA1.649e-3351.30Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_HUMAN1.649e-3349.07Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_YEAST6.266e-3348.84Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_BOVIN6.266e-3348.45Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_CANGA1.823e-3249.70Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_NEUCR1.823e-3250.31Serine hydroxymethyltransferase, cytosolic OS=Neur... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665344 ID=EY665344; Name=EY665344; organism=Citrus sinensis; type=EST; length=1003bp
GAGAACAAAAATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCC
TCGACAAACCCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATG
TCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCAC
TTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTG
CTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTC
ATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTC
TGTCATGACCAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATG
GAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCCAAAACGAGCT
CTGGAAACATTTCGGTTGGATCCTNGAAAATGGGGAGTGAATGTGCAGTC
TCTGTCTGGATCTCCCTCTAATTTTTCAGTCTAACACTGCATTGGTAAAA
ACCTCATGATAGGATCATGGCCCTTGATCTTCCCCATGGGGGGCATCCTC
TCCCCGGCTATCCAAACAAATACCAAAAAAAAACCTGCAGGGGCCATATT
TTTTAAAACAATGGCCTACAAAATTGAATGAAAAACCCCGGGTTATATAA
AATAAGACCAATTGGGAAAAAAAGGGCCCCCCCCCTTTCCGGGCCCAAAA
TTAAATTGTTTGCGTGGGGGCAAGGGGTTTTTGCCCCAATTTGTTTAAAT
TAAAAAACCTTTTTTCCCAGGGGTTTGGGACAAAAAAAAAAAAAAAACCT
AAAATGGTTGGGGAAAAAATAGGGGCAAACACTTATAGGGGGTTTGGGGG
TGGGGCGCGGGGGGGGGGCCCCCCCCCCTCCCCCCCCTTTTTTTGAGAAA
ATGAGAGAAAAAAAGGTTGTGGGGGCCCCCCCCACCAAAAAACTCCCACA
ACAAAAAAATCTCCTCTTTCTTGTGGGGGGGCGGCCCGCCACGAGGAGGG
GGG
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