EY665344

Overview
NameEY665344
Unique NameEY665344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_PROM4 (Serine hydroxymethyltransferase OS=Prochlorococcus marinus (strain MIT 9211) GN=glyA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.488e-22
Identity = 57/106 (53.77%), Postives = 72/106 (67.92%), Query Frame = 2
Query:  164 LNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            +N+ LE  DP IA +I+ E  RQ   LELI SENFTS +VM+A GSV+TNKY+EG P  RYYGG E+ID  E L  +RA + F+ +   W  NVQ  SG+ +NFSV
Sbjct:    4 INSALEDADPNIASLIQEESKRQENHLELIASENFTSKAVMEAQGSVLTNKYAEGLPNKRYYGGCEHIDKIEGLAIERAKQLFKAE---W-ANVQPHSGAQANFSV 105          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_OENOB (Serine hydroxymethyltransferase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.109e-21
Identity = 54/97 (55.67%), Postives = 68/97 (70.10%), Query Frame = 2
Query:  185 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNF 475
            +DP++A  +  E+ RQ   +EL+ SENF S +V QA GSV+TNKYSEGYPG RYYGGNEYID+AE+L  +RA E F +       NVQ  SGS +NF
Sbjct:    6 LDPQLAKAVSGEEERQRHNIELVASENFVSKAVRQAQGSVLTNKYSEGYPGKRYYGGNEYIDIAENLAIERAKELFGVS----YANVQPHSGSSANF 98          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_PELLD (Serine hydroxymethyltransferase OS=Pelodictyon luteolum (strain DSM 273) GN=glyA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.448e-21
Identity = 57/102 (55.88%), Postives = 71/102 (69.61%), Query Frame = 2
Query:  176 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            L++ D E+ D I  E  RQ + LELI SENFTS +VMQA GSVMTNKY+EGYPG RYYGG E++D+AE L  +RA + F  +     VNVQ  SGS +N +V
Sbjct:    6 LKMQDREVFDAIAGETVRQMETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDIAEDLARERARKLFGCE----YVNVQPHSGSSANMAV 103          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_GEOMG (Serine hydroxymethyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=glyA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.448e-21
Identity = 55/102 (53.92%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  176 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            LE  DP +A+ I HE  RQ   LELI SENF S +VM+A GSV+TNKY+EGYPG RYYGG  ++D+ E+L  +RA E F  D      NVQ  SGS +N +V
Sbjct:    4 LETFDPAVAEAIRHETERQEYNLELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYYGGCHHVDVVENLAIERAKELFGAD----HANVQPHSGSQANMAV 101          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_GEOSM (Serine hydroxymethyltransferase OS=Geobacter sp. (strain M21) GN=glyA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.891e-21
Identity = 55/102 (53.92%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  176 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            LE  DP +A++I HE  RQ   LELI SENF S +V++A GSV+TNKY+EGYPG RYYGG   +D+ E+L   RA E F  D     VNVQ  SGS +N +V
Sbjct:    4 LETFDPAVAEVIRHETERQEYNLELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCHCVDVVENLAIDRAKELFGAD----HVNVQPHSGSQANMAV 101          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_CLAM3 (Serine hydroxymethyltransferase OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=glyA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.891e-21
Identity = 63/144 (43.75%), Postives = 87/144 (60.42%), Query Frame = 2
Query:  158 KQLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK--NLMIGSWPLIFPMGGILSPAIQTNTKKK 583
            +  NAPL  VDPEIA ++E E  RQ   LE+I SENF   +V+Q+ GSV+TNKY+EGYPG RYYGG E++D+AE L   RA   F  +      NVQ  SG+ +N +V   I +  ++++G   L    GG L+  ++ N   K
Sbjct:    5 QSFNAPLSEVDPEIAAVLEQELGRQRGTLEMIASENFVPRAVLQSQGSVLTNKYAEGYPGRRYYGGCEFVDVAEQLAIDRAKSLFGAE----FANVQPHSGATANAAVLAAIAQPGDMILG---LELAHGGHLTHGMKLNFSGK 141          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC1 (Serine hydroxymethyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glyA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.891e-21
Identity = 62/155 (40.00%), Postives = 91/155 (58.71%), Query Frame = 2
Query:  170 APLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCI---GKNLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKI 625
            A L   DP IAD+I  E+ RQ + + LIPSEN+ S +V++A G+V+TNKYSEGYP  RYY G ++ID  E++  +RA + F +D      NVQ  SGSP+N ++   +   G  +M     +  PMGG L     T+     A  I+F+++ Y +
Sbjct:    9 AALTATDPTIADLIRAEERRQSEKIRLIPSENYVSKAVLEATGTVLTNKYSEGYPNRRYYEGQQFIDQIETIAIERAKQLFGVD----HANVQPYSGSPANLAIYLALLSPGDTVM----GMALPMGGHL-----THGWPVSATGIWFRSVQYGV 150          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_BIFAA (Serine hydroxymethyltransferase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=glyA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.470e-21
Identity = 64/159 (40.25%), Postives = 93/159 (58.49%), Query Frame = 2
Query:  167 NAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK--NLMIGSWPLIFPMGGILSPAIQTNTKKKPAGAIFFKTMAYKIE*KT 637
            NAP+   DPEIA+I++ E +RQ  GLE+I SENF   +V+QA GSV+TNKY+EGYPG RYYGG E +D  E++  +RA   F  +      NVQ  SG+ +N +V   + K  + ++G   L    GG L+  ++ N   +     F+   AY +  +T
Sbjct:   15 NAPIAEADPEIAEILDAELSRQQNGLEMIASENFVPRAVLQAQGSVLTNKYAEGYPGRRYYGGCEQVDKIETIARERAKSLFGAE----YANVQPHSGAQANAAVYQALVKPGDTVLG---LALDHGGHLTHGMKINFSGR-----FYHAEAYGVNPET 161          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_ACIBL (Serine hydroxymethyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glyA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.470e-21
Identity = 55/104 (52.88%), Postives = 70/104 (67.31%), Query Frame = 2
Query:  161 QLNAPLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSN 472
            +++  L   DP+IA+ I +E+ RQ +GLELI SENF S +V+QA GSV TNKY+EGYPG RYYGG EY D+ E+L   RA E F  +      NVQ  SGS +N
Sbjct:    4 RMSQSLNEEDPQIAEAIANEERRQHEGLELIASENFVSEAVLQAAGSVFTNKYAEGYPGKRYYGGCEYADVVENLARDRAKELFGAE----HANVQPHSGSSAN 103          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_PELPB (Serine hydroxymethyltransferase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.226e-21
Identity = 57/102 (55.88%), Postives = 70/102 (68.63%), Query Frame = 2
Query:  176 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            L+  D E+ + I  E  RQ + LELI SENFTS +VMQA GSVMTNKY+EGYPG RYYGG E++D+AE+L   RA + F  D     VNVQ  SGS +N +V
Sbjct:    6 LQKQDSELFEAIAKETGRQTETLELIASENFTSRAVMQACGSVMTNKYAEGYPGKRYYGGCEFVDIAENLARDRAKKLFGCD----YVNVQPHSGSSANMAV 103          
The following BLAST results are available for this feature:
BLAST of EY665344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_PROM48.488e-2253.77Serine hydroxymethyltransferase OS=Prochlorococcus... [more]
GLYA_OENOB1.109e-2155.67Serine hydroxymethyltransferase OS=Oenococcus oeni... [more]
GLYA_PELLD1.448e-2155.88Serine hydroxymethyltransferase OS=Pelodictyon lut... [more]
GLYA_GEOMG1.448e-2153.92Serine hydroxymethyltransferase OS=Geobacter metal... [more]
GLYA_GEOSM1.891e-2153.92Serine hydroxymethyltransferase OS=Geobacter sp. (... [more]
GLYA_CLAM31.891e-2143.75Serine hydroxymethyltransferase OS=Clavibacter mic... [more]
GLYA_ACIC11.891e-2140.00Serine hydroxymethyltransferase OS=Acidothermus ce... [more]
GLYA_BIFAA2.470e-2140.25Serine hydroxymethyltransferase OS=Bifidobacterium... [more]
GLYA_ACIBL2.470e-2152.88Serine hydroxymethyltransferase OS=Acidobacteria b... [more]
GLYA_PELPB3.226e-2155.88Serine hydroxymethyltransferase OS=Pelodictyon pha... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665344 ID=EY665344; Name=EY665344; organism=Citrus sinensis; type=EST; length=1003bp
GAGAACAAAAATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCC
TCGACAAACCCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATG
TCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCAC
TTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTG
CTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTC
ATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTC
TGTCATGACCAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATG
GAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCCAAAACGAGCT
CTGGAAACATTTCGGTTGGATCCTNGAAAATGGGGAGTGAATGTGCAGTC
TCTGTCTGGATCTCCCTCTAATTTTTCAGTCTAACACTGCATTGGTAAAA
ACCTCATGATAGGATCATGGCCCTTGATCTTCCCCATGGGGGGCATCCTC
TCCCCGGCTATCCAAACAAATACCAAAAAAAAACCTGCAGGGGCCATATT
TTTTAAAACAATGGCCTACAAAATTGAATGAAAAACCCCGGGTTATATAA
AATAAGACCAATTGGGAAAAAAAGGGCCCCCCCCCTTTCCGGGCCCAAAA
TTAAATTGTTTGCGTGGGGGCAAGGGGTTTTTGCCCCAATTTGTTTAAAT
TAAAAAACCTTTTTTCCCAGGGGTTTGGGACAAAAAAAAAAAAAAAACCT
AAAATGGTTGGGGAAAAAATAGGGGCAAACACTTATAGGGGGTTTGGGGG
TGGGGCGCGGGGGGGGGGCCCCCCCCCCTCCCCCCCCTTTTTTTGAGAAA
ATGAGAGAAAAAAAGGTTGTGGGGGCCCCCCCCACCAAAAAACTCCCACA
ACAAAAAAATCTCCTCTTTCTTGTGGGGGGGCGGCCCGCCACGAGGAGGG
GGG
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