EY665344

Overview
NameEY665344
Unique NameEY665344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_THEAB (Serine hydroxymethyltransferase OS=Thermosipho africanus (strain TCF52B) GN=glyA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.385e-21
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 2
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSN 472
            DPEI D+I  E  RQ  GLELI SENF S++V++A+GSV+TNKY+EGYPG RYYGG E++D+AE L   RA E F +       NVQ  SGS +N
Sbjct:    9 DPEIYDVILKEWERQEYGLELIASENFASLAVIEAMGSVLTNKYAEGYPGRRYYGGCEWVDVAEKLARDRAKELFNVK----YANVQPHSGSQAN 99          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_THEM4 (Serine hydroxymethyltransferase OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.226e-20
Identity = 54/96 (56.25%), Postives = 68/96 (70.83%), Query Frame = 2
Query:  185 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSN 472
            VDPEI ++I  E  RQ  GLELI SENF S++V++A+GSV+TNKY+EGYPG RYYGG E++D+AE L   RA E F +       NVQ  SGS +N
Sbjct:    8 VDPEIYEVILKEWDRQEYGLELIASENFASLAVIEAMGSVLTNKYAEGYPGRRYYGGCEWVDVAEKLARDRAKELFNVK----YANVQPHSGSQAN 99          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_RHOBA (Serine hydroxymethyltransferase OS=Rhodopirellula baltica GN=glyA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.226e-20
Identity = 51/98 (52.04%), Postives = 68/98 (69.39%), Query Frame = 2
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            DP I D I+ E  RQ  GLE+I SEN+TS ++M+AVGS++TNKY+EGYPG RYYGG E++D+ E++   RA E F  +      NVQ  SGS +N +V
Sbjct:    8 DPAIWDAIQAETTRQQDGLEMIASENYTSPAIMEAVGSILTNKYAEGYPGRRYYGGCEHVDVVETIAIDRAKELFGAE----AANVQPHSGSQANAAV 101          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_BLOPB (Serine hydroxymethyltransferase OS=Blochmannia pennsylvanicus (strain BPEN) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.226e-20
Identity = 64/143 (44.76%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGKNLMIGSWPLIFPM----GGILSPAIQTNTKKKPAGAIFF 604
            D E+  II+ E  RQ + +ELI SEN+ S  VM+A GS +TNKY+EGYPG RYYGG EY+DM E L   RA E F  D      N+Q  SGS +NFSV      N ++     I  M    GG L+   Q N   K   A+F+
Sbjct:    8 DIELWKIIQQETIRQEEHIELIASENYVSTQVMKAQGSQLTNKYAEGYPGKRYYGGCEYVDMIEQLGINRAKELFSAD----YANIQPHSGSQANFSV-----YNALLHPGDTILSMHLNHGGHLTHGSQVNFSGKLYNAVFY 141          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_PROA2 (Serine hydroxymethyltransferase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.601e-20
Identity = 56/102 (54.90%), Postives = 68/102 (66.67%), Query Frame = 2
Query:  176 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            L+  D EI D I +E  RQ + LELI SENF S +VM+A GSVMTNKY+EGYPG RYYGG E++D+AE L  +RA + F        VNVQ  SGS +N  V
Sbjct:    6 LQKQDKEIFDAISNEVLRQTETLELIASENFASKAVMEACGSVMTNKYAEGYPGKRYYGGCEFVDVAEDLARERAKKLFGCQ----YVNVQPHSGSSANMGV 103          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_METPE (Serine hydroxymethyltransferase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.601e-20
Identity = 61/130 (46.92%), Postives = 80/130 (61.54%), Query Frame = 2
Query:  176 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSN----FSV*HCIGKNLMIGSWPLIFPMGGILS 553
            L   DPEIA++IE E+ RQ  GLELI SEN  S +V++A+GS++TNKY+EGYPG RYYGG E+ D  E+L   R  + F  +      NVQ  SG+ +N    FSV  C GK+ M+    +    GG LS
Sbjct:    4 LATADPEIAELIECERLRQVNGLELIASENLVSKAVLEAMGSILTNKYAEGYPGKRYYGGCEFHDRIENLARDRLKQLFNAE----HANVQPHSGTQANMAVYFSVMEC-GKDRMMS---MSLTQGGHLS 125          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_KINRD (Serine hydroxymethyltransferase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.601e-20
Identity = 54/105 (51.43%), Postives = 69/105 (65.71%), Query Frame = 2
Query:  173 PLEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*H 487
            PL  VDPEIA +++ E  RQ   LE+I SENF   SV++A GSV+TNKY+EGYPG RYYGG E++D+AE L   RA E F  +      NVQ  SG+ +N +  H
Sbjct:   18 PLSEVDPEIAAVLDAELGRQRDTLEMIASENFAPRSVLEAQGSVLTNKYAEGYPGKRYYGGCEHVDVAEELARTRAKELFGAE----HANVQPHSGASANAAAMH 118          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_HALHL (Serine hydroxymethyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.601e-20
Identity = 55/104 (52.88%), Postives = 69/104 (66.35%), Query Frame = 2
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV*HCIGK 499
            DPE+A  IE E+ RQ   +ELI SEN+ S  VM+A GSV+TNKY+EGYPG RYYGG E++D+AE L   RA + F  D      NVQ  SGS +N +V H + K
Sbjct:   12 DPELAAAIEDERQRQEDHIELIASENYASPRVMEAQGSVLTNKYAEGYPGKRYYGGCEHVDVAEQLAIDRAKQLFGAD----YANVQPHSGSQANAAVFHALLK 111          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_GEOBB (Serine hydroxymethyltransferase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.601e-20
Identity = 54/102 (52.94%), Postives = 67/102 (65.69%), Query Frame = 2
Query:  176 LEVVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            LE  DP +A++I  E  RQ   LELI SENF S +V++A GSV+TNKY+EGYPG RYYGG   +D+ E+L   RA E F  D     VNVQ  SGS +N +V
Sbjct:    4 LETFDPAVAEVIRQETERQEYNLELIASENFVSPAVLEAQGSVLTNKYAEGYPGKRYYGGCHCVDVVENLAIDRAKELFGAD----HVNVQPHSGSQANMAV 101          
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_DESAA (Serine hydroxymethyltransferase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=glyA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.601e-20
Identity = 57/99 (57.58%), Postives = 65/99 (65.66%), Query Frame = 2
Query:  185 VDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            VDPE A  IE E  RQ   LELI SEN  S +VM A GSVMTNKY+EGYPG RYYGG E++D+AE+L   RA E F+ D      NVQ  SGS +N  V
Sbjct:    9 VDPEAAKAIEQELDRQQFTLELIASENIASPAVMAAQGSVMTNKYAEGYPGHRYYGGCEFVDVAENLARDRAKELFQAD----YANVQPHSGSQANMGV 103          
The following BLAST results are available for this feature:
BLAST of EY665344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_THEAB9.385e-2156.84Serine hydroxymethyltransferase OS=Thermosipho afr... [more]
GLYA_THEM41.226e-2056.25Serine hydroxymethyltransferase OS=Thermosipho mel... [more]
GLYA_RHOBA1.226e-2052.04Serine hydroxymethyltransferase OS=Rhodopirellula ... [more]
GLYA_BLOPB1.226e-2044.76Serine hydroxymethyltransferase OS=Blochmannia pen... [more]
GLYA_PROA21.601e-2054.90Serine hydroxymethyltransferase OS=Prosthecochlori... [more]
GLYA_METPE1.601e-2046.92Serine hydroxymethyltransferase OS=Methanosphaerul... [more]
GLYA_KINRD1.601e-2051.43Serine hydroxymethyltransferase OS=Kineococcus rad... [more]
GLYA_HALHL1.601e-2052.88Serine hydroxymethyltransferase OS=Halorhodospira ... [more]
GLYA_GEOBB1.601e-2052.94Serine hydroxymethyltransferase OS=Geobacter bemid... [more]
GLYA_DESAA1.601e-2057.58Serine hydroxymethyltransferase OS=Desulfatibacill... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665344 ID=EY665344; Name=EY665344; organism=Citrus sinensis; type=EST; length=1003bp
GAGAACAAAAATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCC
TCGACAAACCCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATG
TCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCAC
TTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTG
CTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTC
ATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTC
TGTCATGACCAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATG
GAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCCAAAACGAGCT
CTGGAAACATTTCGGTTGGATCCTNGAAAATGGGGAGTGAATGTGCAGTC
TCTGTCTGGATCTCCCTCTAATTTTTCAGTCTAACACTGCATTGGTAAAA
ACCTCATGATAGGATCATGGCCCTTGATCTTCCCCATGGGGGGCATCCTC
TCCCCGGCTATCCAAACAAATACCAAAAAAAAACCTGCAGGGGCCATATT
TTTTAAAACAATGGCCTACAAAATTGAATGAAAAACCCCGGGTTATATAA
AATAAGACCAATTGGGAAAAAAAGGGCCCCCCCCCTTTCCGGGCCCAAAA
TTAAATTGTTTGCGTGGGGGCAAGGGGTTTTTGCCCCAATTTGTTTAAAT
TAAAAAACCTTTTTTCCCAGGGGTTTGGGACAAAAAAAAAAAAAAAACCT
AAAATGGTTGGGGAAAAAATAGGGGCAAACACTTATAGGGGGTTTGGGGG
TGGGGCGCGGGGGGGGGGCCCCCCCCCCTCCCCCCCCTTTTTTTGAGAAA
ATGAGAGAAAAAAAGGTTGTGGGGGCCCCCCCCACCAAAAAACTCCCACA
ACAAAAAAATCTCCTCTTTCTTGTGGGGGGGCGGCCCGCCACGAGGAGGG
GGG
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