EY665344

Overview
NameEY665344
Unique NameEY665344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_SALAR (Serine hydroxymethyltransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=glyA PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.731e-20
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 2 
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF+V
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAV 105
[Close]
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_SALA4 (Serine hydroxymethyltransferase OS=Salmonella agona (strain SL483) GN=glyA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.731e-20
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 2 
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF+V
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHSGSQANFAV 105
[Close]
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_KLEP7 (Serine hydroxymethyltransferase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=glyA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.731e-20
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 2 
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF+V
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHSGSQANFAV 105
[Close]
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_KLEP3 (Serine hydroxymethyltransferase OS=Klebsiella pneumoniae (strain 342) GN=glyA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.731e-20
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 2 
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF+V
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGAD----YANVQPHSGSQANFAV 105
[Close]
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_ENTS8 (Serine hydroxymethyltransferase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=glyA PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.731e-20
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 2 
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF+V
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAV 105
[Close]
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_ENT38 (Serine hydroxymethyltransferase OS=Enterobacter sp. (strain 638) GN=glyA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.731e-20
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 2 
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF+V
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAV 105
[Close]
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_ECOUT (Serine hydroxymethyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=glyA PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.731e-20
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 2 
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF+V
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAV 105
[Close]
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_ECOSM (Serine hydroxymethyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.731e-20
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 2 
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF+V
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAV 105
[Close]
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_ECOSE (Serine hydroxymethyltransferase OS=Escherichia coli (strain SE11) GN=glyA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.731e-20
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 2 
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF+V
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAV 105
[Close]
BLAST of EY665344 vs. ExPASy Swiss-Prot
Match: GLYA_ECOLU (Serine hydroxymethyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=glyA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.731e-20
Identity = 54/98 (55.10%), Postives = 65/98 (66.33%), Query Frame = 2 
Query:  188 DPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCPKRALETFRLDPXKWGVNVQSLSGSPSNFSV 481
            D E+   +E EK RQ + +ELI SEN+TS  VMQA GS +TNKY+EGYPG RYYGG EY+D+ E L   RA E F  D      NVQ  SGS +NF+V
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAV 105
The following BLAST results are available for this feature:
BLAST of EY665344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_SALAR2.731e-2055.10Serine hydroxymethyltransferase OS=Salmonella ariz... [more]
GLYA_SALA42.731e-2055.10Serine hydroxymethyltransferase OS=Salmonella agon... [more]
GLYA_KLEP72.731e-2055.10Serine hydroxymethyltransferase OS=Klebsiella pneu... [more]
GLYA_KLEP32.731e-2055.10Serine hydroxymethyltransferase OS=Klebsiella pneu... [more]
GLYA_ENTS82.731e-2055.10Serine hydroxymethyltransferase OS=Enterobacter sa... [more]
GLYA_ENT382.731e-2055.10Serine hydroxymethyltransferase OS=Enterobacter sp... [more]
GLYA_ECOUT2.731e-2055.10Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECOSM2.731e-2055.10Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECOSE2.731e-2055.10Serine hydroxymethyltransferase OS=Escherichia col... [more]
GLYA_ECOLU2.731e-2055.10Serine hydroxymethyltransferase OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-G11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665344 ID=EY665344; Name=EY665344; organism=Citrus sinensis; type=EST; length=1003bp
GAGAACAAAAATGGCCATGGCTCTGGCTCTTCGCAGGCTCTCATCTTCCC
TCGACAAACCCACTCGTCCTCTCTTCAATGGCTCCTCCCTCTACTACATG
TCATCTTTGCCAAATGAAGCTGTTTACGAGAAAGAGAAAAATGGTGTCAC
TTGGCCAAAACAACTGAATGCTCCACTTGAGGTCGTTGATCCTGAGATTG
CTGACATTATCGAGCATGAAAAAGCACGACAATGGAAGGGACTTGAACTC
ATTCCTTCAGAGAACTTTACTTCAGTATCCGTGATGCAAGCTGTGGGGTC
TGTCATGACCAACAAGTACAGTGAAGGATATCCAGGTGCAAGATATTATG
GAGGAAACGAGTATATTGACATGGCGGAATCCTTATGTCCAAAACGAGCT
CTGGAAACATTTCGGTTGGATCCTNGAAAATGGGGAGTGAATGTGCAGTC
TCTGTCTGGATCTCCCTCTAATTTTTCAGTCTAACACTGCATTGGTAAAA
ACCTCATGATAGGATCATGGCCCTTGATCTTCCCCATGGGGGGCATCCTC
TCCCCGGCTATCCAAACAAATACCAAAAAAAAACCTGCAGGGGCCATATT
TTTTAAAACAATGGCCTACAAAATTGAATGAAAAACCCCGGGTTATATAA
AATAAGACCAATTGGGAAAAAAAGGGCCCCCCCCCTTTCCGGGCCCAAAA
TTAAATTGTTTGCGTGGGGGCAAGGGGTTTTTGCCCCAATTTGTTTAAAT
TAAAAAACCTTTTTTCCCAGGGGTTTGGGACAAAAAAAAAAAAAAAACCT
AAAATGGTTGGGGAAAAAATAGGGGCAAACACTTATAGGGGGTTTGGGGG
TGGGGCGCGGGGGGGGGGCCCCCCCCCCTCCCCCCCCTTTTTTTGAGAAA
ATGAGAGAAAAAAAGGTTGTGGGGGCCCCCCCCACCAAAAAACTCCCACA
ACAAAAAAATCTCCTCTTTCTTGTGGGGGGGCGGCCCGCCACGAGGAGGG
GGG
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