CV884961

Overview
NameCV884961
Unique NameCV884961
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length919
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884961 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.460e-33
Identity = 81/267 (30.34%), Postives = 124/267 (46.44%), Query Frame = -3
Query:  141 GGSAQNCGSGAVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS---DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDC 917
            G + + CG G   G   +G G  G       +  +++   F  +   +    C  + FYT  AF+ A K +P F + G++   KREIAAFFA   HET               +CYI +++  +   D            +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM                     N V+     G+G TT  +   +ECG    + +  R+G++  +C + G+ PG NL C
Sbjct:   38 GTTDEYCGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGI-KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWM---------------------NSVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of CV884961 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.640e-32
Identity = 85/259 (32.82%), Postives = 118/259 (45.56%), Query Frame = -3
Query:  141 GSGAVCGERDTGHGTDGGELG---KIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDC 896
            G G   G    G G  GG  G   + +  E F + +  +    C  + FYT  +F+ AA ++  F         KREIAAFFA   HET                CYI +++  S           P Q    YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +EC       V  R+ ++  +C +FG+ PG NL C
Sbjct:   64 GGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNYGPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of CV884961 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 7.914e-32
Identity = 82/262 (31.30%), Postives = 117/262 (44.66%), Query Frame = -3
Query:  141 GSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXPLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDC 914
            G     G  A  G      G   G   + +  E F + +  +    C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                CYI +++  +           P Q    YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM                     N+V+     G+G T   ING +EC       V  R+ ++  +C +FG+ PG NL C
Sbjct:   58 GPCWGSGGEAAAGMAGRKAGAGAGVSVESVVTEAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM---------------------NNVHQVMSQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of CV884961 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.350e-31
Identity = 78/255 (30.59%), Postives = 119/255 (46.67%), Query Frame = -3
Query:  141 GSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS---DXXXXXXXXPLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDC 896
            G G   G    G G+ G  +  +++   F  +   +    C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +CYI +++  +   D            +YYGRGP+Q++WN NY   G  +G + L +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC     + +  R+G++  +C +  + PG NL C
Sbjct:   61 GGGGGGGGGGGGGGSGGANVANVVTDAFFNGI-KNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHETGH-------------FCYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNYGPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of CV884961 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.676e-29
Identity = 84/264 (31.82%), Postives = 118/264 (44.70%), Query Frame = -3
Query:  141 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS-DXXXXXXXXPLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTFCGKFGIQPGDNLDC 917
            G     CG+G   G   T        +   I    F + +  + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +CYI ++   S D          P      Y+GRGPIQL+WN NY   G A   D L  P+ ++ D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC     + V  R+ ++T +C + G+  GDNL C
Sbjct:   41 GTGEDYCGTGCQQGPCTTASPPPSNNVNADILTADFLNGIIDQADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHETGH-------------FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNYGPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
The following BLAST results are available for this feature:
BLAST of CV884961 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIB_MAIZE2.460e-3330.34Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHI5_ORYSJ4.640e-3232.82Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_ORYSJ7.914e-3231.30Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE1.350e-3130.59Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU3.676e-2931.82Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_011F05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884961 ID=CV884961; Name=CV884961; organism=Citrus sinensis; type=EST; length=919bp
TACATTTAGTTGTCCCCTACAAGTGTGACATCTAAAGTTTTTATTAAGTA
GCTTTTATTAAGCTTATTTTACTAAAACGTTGATCATGATGATCACATAG
ATTGTGCCATCAAATTAGGGCCATAAGGCCCTTGGTTGTAGCAATCAAGA
TTGTCGCCAGGCTGAATCCCAAACTTGCCACAGAAAGTGGTAAAGAACCC
AATACGGTTAGCTACAAAGCTATTCCAACCTTTGCCACATTCAATTCCAC
CGTTGATTATATTTGTGGTTAGACCGTATCCCGGAAGCCGGCTGGCGTTT
ACGTCATTTGCTGATGGTTTCCATTCGTCGATAATGACTTCGTGGCACGA
TGGCTTTGGTGGCTGTGCAGTCATCCAGAACCAGATTGCTGACTTGAATG
ATAGTACTGGATCAGTGGCAAGAAGGTCTGGATTGTTCAACAAGTCCACC
CCCAAGGCTTCTCCGCACCTTAAGTAATTGCAATTCCAAGTGAGTTGAAT
TGGACCTCGGCCATAGTATTGCCCTGGCAAGGGACATGGACAGTAAGGAT
AACAGTAGTCGGACCCATGGCTAACTTGCCTAATATAGCAATATCCCCAA
GCATATTCTCCACCAGGTGCATCGGGCCATCCCCCAGTAGTTTCATGGCC
AGTTTGGGCAAAAAAGGCAGCAATTTCTCTTTTACGCATGGTTTCATTTC
CAGAGTTACCAAAGGCTGGAAAAGCTTTGGCTGCCTCTATAAAAGCATCA
TAAGTGTAGAAGCCTCTGGCATGGCATCGTTCATCATTTCTATACGGAAG
CAAGTCTTCAAACATCTCCCTTGAGATGATCTTGCCCAGTTCACCGCCAT
CCGTCCCGTGGCCAGTATCACGTTCACCGCACACAGCGCCGCTTCCACAA
TTCTGTGCTGAACCTCCTT
back to top