CV884960

Overview
NameCV884960
Unique NameCV884960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.191e-59
Identity = 111/216 (51.39%), Postives = 141/216 (65.28%), Query Frame = 2
Query:  164 LGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFF 811
            +  +IS  +FE +L +R        GFYTYDAFI AAK+FPAF  +G+  +RKRE+AAF AQT HETTGGWP AP G Y  G                         Y+GRGPIQ+++N NY   G+A+GVDLL NPDL+ +D  + FK+A+WFWMT Q PKPS H+VI   W PS+ D  A R+PGYG+ TNII+GG+ECGKG  S VA+RIG++
Sbjct:    1 VSSVISSSLFEKMLLHR--------GFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELGST---------------------SDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYY 187          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.855e-58
Identity = 104/230 (45.22%), Postives = 148/230 (64.35%), Query Frame = 2
Query:  140 GHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G+      +  I+S +++  L  +++D  C ARGFYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW  AP G YAWG CY  +++  S             PG+ Y+GRGPIQ++WN NY   G+ALG D L NP+++A    ++F++A+WFWMT +  KPSCH+V++ E++P   DV A+R  G+GL TNI+NGG+EC +  ++ V NRIGF+  +
Sbjct:   41 GYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRY 270          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.586e-55
Identity = 101/217 (46.54%), Postives = 134/217 (61.75%), Query Frame = 2
Query:  179 SREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLP--GQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            +  MFE +LP RN++ C  +GFYTYDA+  A + +P FG +G++  RKRE+AAFFAQT  ET+G         + WGYC + +++  SD          P    YYGRGP+QL WN NY  CG  LG +LL+ P+ +ATDPVLSF++A+WFWM       PSCHEVI  EW PS  D+ A R PG+G+ TNII  G EC K   +   NRI ++  +
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRY 284          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.066e-54
Identity = 110/255 (43.14%), Postives = 150/255 (58.82%), Query Frame = 2
Query:   83 QGGSAQNCGSGAVCGERD------TGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            +GG    C      G+ D      T  G     +  +++ + FE +LP+R+D  C ARGFY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT H T+       GG Y+WGYCY       SD           PG+ Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  A R PGYGLTTNI+ GG++C  G     A+R+ F+  +
Sbjct:   64 KGGCQSQCRVSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRY 309          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.066e-54
Identity = 110/255 (43.14%), Postives = 150/255 (58.82%), Query Frame = 2
Query:   83 QGGSAQNCGSGAVCGERD------TGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQ-PPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            +GG    C      G+ D      T  G     +  +++ + FE +LP+R+D  C ARGFY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT H T+       GG Y+WGYCY       SD           PG+ Y+ RGP+Q+ +N NY   GEA+G DLL NP+L+ATDP ++FK+A+W WMTA+ P +PS H V+  +W P+  D  A R PGYGLTTNI+ GG++C  G     A+R+ F+  +
Sbjct:   64 KGGCQSQCRVSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGG--ADRVAFYKRY 309          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 5.252e-37
Identity = 92/251 (36.65%), Postives = 140/251 (55.78%), Query Frame = 2
Query:   86 GGSAQNCGSGAVCGERD--TGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVS-HGSDXXXXXXXXXLPGQYYG-RGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFV--ANRIGFFTTF 820
            G   Q   S +V G R   +G+ T       +++  +F+ +  +R D  C ++GFY+Y +F+ AA++FPAFG  G+   RKRE+AAF A     T+G   D     +AWG C+I   +   +D           G+ Y  RGPIQLT N NY   G+A+G DL+ NPDL+  DP++SFK+A+WFWM+    KPSCH++++     +AN   A+R+P  G+  NII+       G + F   ++ IGF+  +
Sbjct:  102 GSKCQYRCSSSVRGPRVALSGNSTANSIGNVVVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF----GHDDFAVRSSSIGFYKRY 339          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.284e-32
Identity = 82/249 (32.93%), Postives = 123/249 (49.40%), Query Frame = 2
Query:   86 GGSAQNCGSGAVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQ----YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G  +  CG+G   G  D    T+   +  I++ E F  L+  + D+ C A+GFYT DAF+ AA  +P+FG +G+    KREIAAFFA   HET               +CYI ++   S           P      YYGRGP+Q++WN NY   G+++G D L +PD +A  PVL+F++A+W+W        + H+  +                G+G T   ING +EC     + V+NR+ ++  F
Sbjct:   43 GTGSDYCGTGCQAGPCDVP-ATNDVSVASIVTPEFFAALVA-QADDGCAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQF 257          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.613e-28
Identity = 90/254 (35.43%), Postives = 118/254 (46.46%), Query Frame = 2
Query:  101 NCGSGAVCGERDT-----------GHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWP-DAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVAN-RIGFFTTF 820
            NC SG   G   T           G G  G  +  I+S+  F+ ++  +    C  + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT     +   G+    YC         D           G+ YYGRGP+QL+WN NY   G+A+G D L NP+ +ATD   SFK+A+WFWMT                     +V++    G+G TT  ING +EC  G N   AN RI F+  +
Sbjct:   55 NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYC---------DQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT---------------------NVHSVMNQGFGATTKAINGALEC-NGQNQDQANDRIQFYKKY 274          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.820e-28
Identity = 74/253 (29.25%), Postives = 115/253 (45.45%), Query Frame = 2
Query:   86 GGSAQNCGSGAVCGERDTGHGTDGG-----ELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGS---DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G + + CG G   G   +G G  G       +  +++   F  +   +    C  + FYT  AF+ A K +P F + G++   KREIAAFFA   HET               +CYI +++  +   D            +YYGRGP+Q++WN NY   G A+G D L +P  +A D V++FK+A+WFWM                     N V+     G+G TT  +   +ECG    + +  R+G++  +
Sbjct:   38 GTTDEYCGDGCQSGPCRSGRGGGGSGGGGANVASVVTSSFFNGI-KNQAGSGCEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHETGH-------------FCYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNYGPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWM---------------------NSVHGVVPQGFGATTRAMQRALECGGNNPAQMNARVGYYRQY 255          
BLAST of CV884960 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 9.928e-28
Identity = 81/246 (32.93%), Postives = 119/246 (48.37%), Query Frame = 2
Query:   86 GGSAQNCGSGAVCGER-DTGHGTDGGELGKIISREMFEDLLPYRNDERCHARGFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCYIRQVSHGSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGEALGVDLLNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNASRLPGYGLTTNIINGGIECGKGWNSFVANRIGFFTTF 820
            G S   CG G   G   D   G     +  I+++E F D +  +    C  + FYT   F+EA  A+P FG    +  RKREIAA+FA   HET           +A  YC   Q    +             +Y+GRGP+QL+WN NY+  G+ L  D LN+PD++  DP++SFK+++WFW+     +     VI+D   P+          G+G T  IINGG EC     + +  R+G++  +
Sbjct:   19 GNSYDYCGPGCQAGPCWDPCEGDGTLTVSDIVTQE-FWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNK----------EYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI-----RKGVQYVILD---PN---------QGFGATIRIINGGQECDGHNTAQMMARVGYYQEY 236          
The following BLAST results are available for this feature:
BLAST of CV884960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIT_AVESA2.191e-5951.39Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI10_ORYSJ1.855e-5845.22Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI8_POPTR5.586e-5546.54Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ8.066e-5443.14Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI8.066e-5443.14Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
AGI_URTDI5.252e-3736.65Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI6_ORYSJ2.284e-3232.93Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU2.613e-2835.43Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIB_MAIZE5.820e-2829.25Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIT_DIOJA9.928e-2832.93Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011F05_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884960 ID=CV884960; Name=CV884960; organism=Citrus sinensis; type=EST; length=821bp
GGATAATTGATATCATAACTCTTGCTTTCAAATGAGGCTCATTGGGTCCT
TACTAATTTTCTCTCTAGTTTTATCTTTTGTACAAGGAGGTTCAGCACAG
AATTGTGGAAGCGGCGCTGTGTGCGGTGAACGTGATACTGGCCACGGGAC
GGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGACT
TGCTTCCGTATAGAAATGATGAACGATGCCATGCCAGAGGCTTCTACACT
TATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGTAACTC
TGGAAATGAAACCATGCGTAAAAGAGAAATTGCTGCCTTTTTTGCCCAAA
CTGGCCATGAAACTACTGGGGGATGGCCCGATGCACCTGGTGGAGAATAT
GCTTGGGGATATTGCTATATTAGGCAAGTTAGCCATGGGTCCGACTACTG
TTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGAGGTC
CAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAGCCTTG
GGGGTGGACTTGTTGAACAATCCAGACCTTCTTGCCACTGATCCAGTACT
ATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGC
CATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAATGAC
GTAAACGCCAGCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAA
CGGTGGAATTGAATGTGGCAAAGGTTGGAATAGCTTTGTAGCTAACCGTA
TTGGGTTCTTTACCACTTTCT
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