CV884958

Overview
NameCV884958
Unique NameCV884958
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length826
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884958 vs. ExPASy Swiss-Prot
Match: METF_STRLI (5,10-methylenetetrahydrofolate reductase OS=Streptomyces lividans GN=metF PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.378e-29
Identity = 79/253 (31.23%), Postives = 128/253 (50.59%), Query Frame = 3
Query:    6 ITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDK-FVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLNMEKSALAILLNLGL 761
            +T+GAGGST   T+    ++     +  + HLT  +  V ++ + +      GI+N+LA+RGDPP   +  ++    G   A +LV+ I+ + GD F + VA +PE HP          +  + +D+     K  AGAD  ITQ+F+  D +L+  +     G   P++P +MP+ + K   R+        PAE+   +   KD+  AV++ GI    E C ++LA G+  +H  TLN   + L I  NLGL
Sbjct:   60 VTYGAGGSTRAGTVRETQQIVADTTLTPVAHLTAVDHSVAELRNIIGQYADAGIRNMLAVRGDPPGDPNADWIAHPEGLTYAAELVRLIKES-GD-FCVGVAAFPEMHP---------RSADWDTDVTNFVDKCRAGADYAITQMFFQPDSYLRLRDRVAAAGCATPVIPEVMPVTSVKMLERLPKLSNASFPAELKERILTAKDDPAAVRSIGIEFATEFCARLLAEGVPGLHFITLNNSTATLEIYENLGL 301          
BLAST of CV884958 vs. ExPASy Swiss-Prot
Match: METF_BUCBP (5,10-methylenetetrahydrofolate reductase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=metF PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.106e-29
Identity = 80/237 (33.76%), Postives = 127/237 (53.59%), Query Frame = 3
Query:   33 ADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLNMEKSALAI 743
            A  T +I  +++    +ET+ HLTC N   E++    +T   +GI+++LALRGD  +   K          A+DL+K ++S     F I+VA YPE HP+ +       N  Y  D++ LK+KV+AGA   ITQ F++ D FL+F + C +  IT  IVPGI PI+N+K  L+ +      IP  +      + ++    +  G  +  +M K + + GI++ H YTLN  + + AI
Sbjct:   68 ATCTSNIVKKIKKYTGIETVPHLTCINSTEEELKVIAKTYWDSGIRHILALRGDIFNTNCK------PKIYAVDLIKLLKSIAN--FEISVAAYPEVHPEAV-------NAKY--DIINLKRKVEAGATRAITQFFFNIDCFLRFRDLCVKNNITIDIVPGIFPISNFKQLLKFSSVSNVSIPKWLCCMFHGLDNDLNTSRIIGSSIAIDMVKVLYSEGIRSFHFYTLNKSEISFAI 287          
BLAST of CV884958 vs. ExPASy Swiss-Prot
Match: METF_BUCAP (5,10-methylenetetrahydrofolate reductase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=metF PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.298e-29
Identity = 80/254 (31.50%), Postives = 127/254 (50.00%), Query Frame = 3
Query:    6 ITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHG--QDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLNMEKSALAILLNLGL 761
            +T+GA       T  I  R+     + T  HLTC +  + ++    +    NGI++++ALRGD P+   Q K          ALDLV  ++      F I+VA YPE HP++         ++ QSD+L LKKK DAGA+  ITQ F++ + +L+F ++C +  I   I+PGI+PI N++   + +      IP  +      + ++ E  K  G ++   + K +L  G+K  H YTLN      +I    GL
Sbjct:   58 VTYGANSGERKKTYSIVQRIHKKTGITTAPHLTCVDASLSELKEIAKFYWENGIRSIVALRGDVPNKSYQHKIY--------ALDLVVLLKKIAD--FDISVAAYPEIHPES---------KNAQSDILNLKKKADAGANRAITQFFFNVESYLRFRDNCIKNNINIEIIPGILPIYNFEQLKKFSSMTNVSIPKWMFEMFNGLDEDLETQKIIGSNIVINIVKTLLYEGVKNFHFYTLNKSDVIYSICHMFGL 292          
BLAST of CV884958 vs. ExPASy Swiss-Prot
Match: METF_BUCAI (5,10-methylenetetrahydrofolate reductase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=metF PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.180e-28
Identity = 78/252 (30.95%), Postives = 125/252 (49.60%), Query Frame = 3
Query:    6 ITWGAGGSTADLTLDIANRMQNTICVETMMHLTCTNMPVEKIDHALQTIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSAYGDYFGITVAGYPEGHPDTIGPDGVASNESYQSDLLYLKKKVDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLNMEKSALAILLNLGL 761
            +T+GA     + T D   ++     + T  HLTC +    K+        ++GI++++ALRGD      +          A+DLV  ++      F I+VA YPE HP++         ++ +SD+L LKKKVDAGA   ITQ F++ + +L+F ++C +  I   I+PGI+P+ N++   R +     KIP  +      + D+    K  G  +  +M KK+   G+K  H YTLN      +I   LGL
Sbjct:   58 VTYGANTGEREKTYDTVQKIYKKTGIITAAHLTCIDSTPHKLKEIAYNYWNSGIKSIVALRGDTLEKDYRHTMY------AVDLVLLLKKIAD--FDISVAAYPELHPES---------KNVKSDILNLKKKVDAGASRAITQFFFNIESYLRFRDNCIKNKINIDIIPGILPVCNFQKLKRFSSMTNVKIPKWMLDMFNGLDDDIFTQKIIGSSIAIDMVKKLSCEGVKNFHFYTLNQSDITYSICHILGL 292          
The following BLAST results are available for this feature:
BLAST of CV884958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
METF_STRLI2.378e-2931.235,10-methylenetetrahydrofolate reductase OS=Strept... [more]
METF_BUCBP3.106e-2933.765,10-methylenetetrahydrofolate reductase OS=Buchne... [more]
METF_BUCAP5.298e-2931.505,10-methylenetetrahydrofolate reductase OS=Buchne... [more]
METF_BUCAI1.180e-2830.955,10-methylenetetrahydrofolate reductase OS=Buchne... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011F04_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884958 ID=CV884958; Name=CV884958; organism=Citrus sinensis; type=EST; length=826bp
GCGACATCACGTGGGGGGCGGGTGGCTCCACGGCCGATCTGACTCTCGAC
ATCGCGAACAGGATGCAGAACACGATATGCGTCGAGACGATGATGCATTT
GACGTGCACGAACATGCCCGTCGAGAAGATCGATCACGCTCTTCAGACTA
TTAAGTCCAACGGCATCCAGAACGTTCTCGCTCTTCGCGGCGATCCTCCT
CACGGTCAGGATAAGTTCGTTCAGATCCAGGGTGGCTTCGCCTGCGCTCT
TGATCTCGTGAAACATATTAGGTCTGCTTATGGTGATTACTTTGGCATCA
CTGTTGCTGGTTACCCAGAGGGACATCCGGATACCATTGGACCTGATGGC
GTGGCCAGTAATGAATCATATCAAAGTGATCTTCTTTATCTGAAGAAAAA
GGTGGATGCTGGTGCAGATCTAATTATCACTCAACTATTCTATGATACTG
ACATGTTTCTTAAGTTTGTGAATGACTGTCGCCAAATTGGAATTACCTGC
CCCATTGTTCCTGGAATTATGCCCATTAATAACTATAAGGGTTTCTTGCG
CATGACTGGCTTTTGCAAAACAAAGATACCAGCTGAGATTACTGCTGCCT
TGGAGCCTATAAAGGACAATGAAGAAGCTGTTAAAGCCTATGGAATTCAC
CTTGGAGCTGAAATGTGCAAGAAAATTTTAGCTCATGGGATTAAGACTGT
GCATCTTTATACTCTAAACATGGAGAAATCTGCATTAGCTATATTATTGA
ATCTTGGTTTGATTGAAGAGTCCCAAATTTCCAGATCCTTACCCTGGAGA
CCCCCTACTAATGTTTTCCGCGTTAA
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