EY665341

Overview
NameEY665341
Unique NameEY665341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1029
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 1.023e-62
Identity = 120/183 (65.57%), Postives = 141/183 (77.05%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVFEXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPGF 576
            MASS+ISSA VAT  R+++ QASMVAPFTGLKSS+ FP TKK N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E G+VYRE++KSPGYYDGRYWTMWKLPM+GCT+ATQV                  +  FDN RQ + ISFIA +P G+
Sbjct:    1 MASSVISSAAVAT--RSNVTQASMVAPFTGLKSSATFPVTKKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAW-VRIIGFDNVRQVQCISFIAYKPEGY 180          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.023e-62
Identity = 118/184 (64.13%), Postives = 144/184 (78.26%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVFEXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPGF 576
            MASS++SSA VAT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYREH+ SPGYYDGRYWTMWKLPM+GCT+ TQV                  +  FDN RQ + ISFIA +P G+
Sbjct:    1 MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAW-IRIIGFDNVRQVQCISFIAYKPEGY 181          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 1.336e-62
Identity = 118/183 (64.48%), Postives = 142/183 (77.60%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVFEXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPGF 576
            MASS++SSA VAT  R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS E LL EI YL++SGW+PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM+GCT+ATQV                  +  FDN RQ + ISFIA +P G+
Sbjct:    1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAW-VRIIGFDNVRQVQCISFIAYKPEGY 180          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 239.965 bits (611), Expect = 1.746e-62
Identity = 118/183 (64.48%), Postives = 141/183 (77.05%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVFEXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPGF 576
            MASSMISSAT+AT N +S AQA+MVAPFTGLKS+SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLP L+   L KE++YL+RS WIPCLEFELE+G+V+R++   P YYDGRYWTMWKLPM+GCT++ QV E                +  FDN RQ + ISFIA +P G+
Sbjct:    1 MASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMWKLPMFGCTDSAQVLEELENCKKEYPNAF-IRIIGFDNVRQVQCISFIAYKPKGY 182          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 2.280e-62
Identity = 123/184 (66.85%), Postives = 136/184 (73.91%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVF-EXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPGF 576
            MASSMISS  V T NRA    A  VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D  L KE+ YL+R GWIPCLEFELE G+VYREHH+SPGYYDGRYWTMWKLPM+GCT+A+QV  E           F    +  FDN RQ + ISFIA +PP F
Sbjct:    1 MASSMISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAF--IRIIGFDNVRQVQCISFIAYKPPSF 178          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.977e-62
Identity = 119/183 (65.03%), Postives = 140/183 (76.50%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVFEXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPGF 576
            MASS++SSA VAT+  A  AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YL+  GW+PCLEFE E G+VYRE+H SP YYDGRYWTMWKLPM+GCT+ATQV                  +  FDN RQ + ISFIA +PPG+
Sbjct:    1 MASSVMSSAAVATSTNA--AQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAW-IRIIGFDNVRQVQCISFIAYKPPGY 180          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 3.889e-62
Identity = 118/183 (64.48%), Postives = 141/183 (77.05%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVFEXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPGF 576
            MASS++SSA VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCT+ATQV                  +  FDN RQ + ISFIA +P G+
Sbjct:    1 MASSIVSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAW-VRIIGFDNVRQVQCISFIAYKPEGY 180          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 3.889e-62
Identity = 121/184 (65.76%), Postives = 139/184 (75.54%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVF-EXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPGF 576
            MASSM+SSA V T    S AQA+MVAPFTGLKSS+AFP T+KTN DITSIASNGGRV CMKVWPP G KKFETLSYLP LSD  L KE++YL+R+ WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCT++ QV  E           F    +  FDN RQ + ISFIA +PP F
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAF--IRIIGFDNTRQVQCISFIAYKPPSF 178          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 3.889e-62
Identity = 118/184 (64.13%), Postives = 144/184 (78.26%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVFEXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPGF 576
            MASS++SSA  AT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E+G+VYRE++ SPGYYDGRYWTMWKLPM+GCT+ATQV                  +  FDN RQ + ISFIA +P GF
Sbjct:    1 MASSIVSSAAAAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAW-VRIIGFDNVRQVQCISFIAYKPEGF 181          
BLAST of EY665341 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 5.079e-62
Identity = 120/183 (65.57%), Postives = 138/183 (75.41%), Query Frame = 1
Query:   28 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTEATQVFEXXXXXXXXXXTFHSSELSKFDNKRQGEGISFIAAQPPGF 576
            MASS+ISSA VAT  R ++AQASMVAPF GLKS+ +FP + K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YL+  GW+PCLEFE E G+VYRE+H SP YYDGRYWTMWKLPM+GCT+ATQV                  +  FDN RQ + ISFIA +PPGF
Sbjct:    1 MASSVISSAAVAT--RTNVAQASMVAPFNGLKSAVSFPVSSKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAW-IRIIGFDNVRQVQCISFIAYKPPGF 180          
The following BLAST results are available for this feature:
BLAST of EY665341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
RBS2A_SOLLC1.023e-6265.57Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS0_SOLTU1.023e-6264.13Ribulose bisphosphate carboxylase small chain C, c... [more]
RBS8_NICPL1.336e-6264.48Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS_GOSHI1.746e-6264.48Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA2.280e-6266.85Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_PETHY2.977e-6265.03Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS3B_SOLLC3.889e-6264.48Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3B_ARATH3.889e-6265.76Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS1_SOLLC3.889e-6264.13Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1_PETHY5.079e-6265.57Ribulose bisphosphate carboxylase small chain SSU8... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-G07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665341 ID=EY665341; Name=EY665341; organism=Citrus sinensis; type=EST; length=1029bp
CAAAGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCTCAATGATCTCATC
GGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGCATGG
TCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAACCAAG
AAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAGTCCA
ATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACTCTCT
CATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAATTAC
CTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGAAAGG
ATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGGACGCT
ACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGAAGCAACCCAG
GTTTTTGAAGGAGGTGGGGGAGGTCCCAAAGGAAAACCCACATTTCATTC
TTCCGAATTATCGAAATTTGACAACAAACGTCAAGGGGAGGGCATCAGTT
TCATTGCGGCCCAGCCACCAGGCTTCAAGGTTCCCCAATTTATTTTGGGG
ACCCCCCCCTGGAAATTTTTGGTTGAATTTATAAATATGGGGAAACCCCC
CAAAATGAATCTTCCAATCAGTGGGGGGTCCGGGTTGGGTTTTAATTTTT
ACATTAAGGGCGGGGGGTGCGGCCGGCCCAAAATTTTTTGGGTTTTCCCC
CCCCAAATTTTGGGCTTCTTTTTTTTTTTTTTTAAATAAATTTTAAAAAT
AGAAACCCCTGTTTTTTTCACTTTTTAATAAAACGGGGGGCCCGAGAGAG
TCCCATTTAATAGGGGGGGGGAAAAAAAAGCGGGGATAAAAAAAAAGAGG
TTTTTTTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGG
GCACCCTCCACAAAAAAAAAAAAACACAGATAAATATAACATAGAATGAC
GTGGGGGGTGCACGGGGGACACGCCCATG
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