CV884949

Overview
NameCV884949
Unique NameCV884949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7375_MAIZE (UPF0737 protein 5 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.287e-14
Identity = 38/65 (58.46%), Postives = 45/65 (69.23%), Query Frame = -1
Query:  239 MPCVSTTGNGPNGKTINGFLYRYTK-TEVSIVCVCHGTSFSPAEFVLHAGGTDVSQPLKHITVIP 430
            MP VS    GP G+  +GFLY+Y K  EV IVCVCHG+  +PAEFV HAGG +V  PL+HI V P
Sbjct:  237 MPMVSYKAEGPGGRKTDGFLYKYRKGEEVRIVCVCHGSFLTPAEFVEHAGGGEVPNPLRHIVVNP 301          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U737_TOBAC (UPF0737 protein mc410 OS=Nicotiana tabacum GN=MC410 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.632e-13
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = -1
Query:  233 SLPHMPCVSTTGNGPNGKTINGFLYRYTKTEVSIVCVCHGTSFSPAEFVLHAGGTDVSQ-PLKHITVIPSA 442
            S P++P VSTTG GPNG+TI+G  YRY+ T++ IVC CHG+  SP +FV HA     SQ P   ++  PS+
Sbjct:  432 SYPNLPWVSTTGPGPNGRTISGVTYRYSSTQIRIVCACHGSHMSPDDFVRHASVEQTSQEPGTGVSSFPSS 502          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7374_ARATH (UPF0737 protein AFP4 OS=Arabidopsis thaliana GN=AFP4 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.131e-13
Identity = 48/110 (43.64%), Postives = 58/110 (52.73%), Query Frame = -1
Query:  233 PTGSKESKKDVGKPPKPQIQSQNTPS----LPHMPCVSTTGNGPNGKTINGFLYRY--TKTEVSIVCVCHGTSFSPAEFVLHAGGT-------DVS-QPLKHITV-IPSA 517
            P   K    +  K  K  +++         L  MPCVST   G +GK + GFLY Y   K EV IVCVCHG+  SPAEFV H GGT       DV   PL+HI V +PS+
Sbjct:  208 PVNGKGKNGNTAKKQKNNVENSGMEKARNILEDMPCVSTRDVGADGKRVEGFLYWYGGNKEEVKIVCVCHGSFLSPAEFVRHGGGTVSDDDGGDVMINPLRHIVVKLPSS 317          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7373_MAIZE (UPF0737 protein 3 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.200e-13
Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = -1
Query:  245 TALSNAVDCSPAKPKEEVATELHGASSQNPVSTTENLSPTGSKESKKDVGKPPKPQ--IQSQNTPSLPHMPCVSTTGNGPNGKTINGFLYRYTKTEVSIVCVCHGTSFSPAEFVLHAGGTDVSQPLKHITV 631
            TA++   + S + P    A     A S   +S     +  GS+E +  +G+       +       +  MP V T G   NG  + GFLY+Y+K EV IVC+CHG+  +P+EFV HAG   V  PL+HI V
Sbjct:  127 TAITEEQNSSSSVPSSGEAISSVTAPSLPALSLVPITATLGSREDQSILGRAGARANGMGDVERRMMQEMPGVFTKGLS-NGSRVEGFLYKYSKGEVRIVCICHGSFLTPSEFVEHAGAGKVDNPLRHIVV 256          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7374_ORYSJ (UPF0737 protein Os05g0558800 OS=Oryza sativa subsp. japonica GN=Os05g0558800 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.058e-12
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = -1
Query:  287 PQIQSQNTPSLPHMPCVSTTGNGPNGKTINGFLYRYTKTEVSIVCVCHGTSFSPAEFVLHA 469
            P ++   + S P +P VSTTG GPNG+TI+G  Y++ + EV IVC CHGT  +P EF+ HA
Sbjct:  364 PNVKFGGSGSYPDLPWVSTTGTGPNGRTISGVTYKFGRNEVKIVCACHGTHMTPEEFMRHA 424          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7372_MAIZE (UPF0737 protein 2 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.058e-12
Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = -1
Query:  245 TALSNAVDCSPAKPKEEVATELHGASSQNPVSTTENLSPTGSKESKKDVGKPPKPQ--IQSQNTPSLPHMPCVSTTGNGPNGKTINGFLYRYTKTEVSIVCVCHGTSFSPAEFVLHAGGTDVSQPLKHITV 631
            TA++   + S + P    A     A S   +S     +  GS+E +  +G+       +       +  MP V T G   NG  + GFLY+Y+K EV IVC+CHG+  +P+EFV HAG   V  PL+HI V
Sbjct:  127 TAITEEQNSSSSVPSSGEAISSVTAPSLPLLSLVPITATLGSREDQSILGRAGARANGMGDVERRMMQEMPGVFTKGLS-NGSRVEGFLYKYSKGEVRIVCICHGSFLTPSEFVEHAGAGKVDNPLRHIVV 256          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7371_MAIZE (UPF0737 protein 1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.058e-12
Identity = 46/131 (35.11%), Postives = 66/131 (50.38%), Query Frame = -1
Query:  245 TALSNAVDCSPAKPKEEVATELHGASSQNPVSTTENLSPTGSKESKKDVGKPPKPQ--IQSQNTPSLPHMPCVSTTGNGPNGKTINGFLYRYTKTEVSIVCVCHGTSFSPAEFVLHAGGTDVSQPLKHITV 631
            TA++   + S + P    A     A S   +S     +  GS+E +  +G+       +       +  MP V T G   NG  + GFLY+Y+K EV IVC+CHG+  +P+EFV HAG   V  PL+HI V
Sbjct:  258 TAITEEQNSSSSVPSSGEAISSVTAPSLPLLSLVPITATLGSREDQSILGRAGARANGMGDVERRMMQEMPGVFTKGLS-NGSRVEGFLYKYSKGEVRIVCICHGSFLTPSEFVEHAGAGKVDNPLRHIVV 387          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7377_MAIZE (UPF0737 protein 7 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.356e-12
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = -1
Query:  266 KPKEEVATELHGASSQNPVSTTENLSPTGSKESKKDVGKPPKPQIQSQNTPSLPHMPCVSTTGNGPNGKTINGFLYRYTKTEVSIVCVCHGTSFSPAEFVLHAGGTDVSQ 595
            KP+E  A+    A +++       LS  GS      +     P ++   + S P +P VST G GPNG+TI+G  Y++ + EV IVC CHGT  SP EF+ HA     +Q
Sbjct:  356 KPREAGASS--SAHAEDEKKADRGLSLMGSA-----IRPGIAPNVKFGGSGSYPDLPWVSTIGAGPNGRTISGVTYKFGRNEVKIVCACHGTHMSPEEFMRHASADAPAQ 458          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7378_MAIZE (UPF0737 protein 8 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.077e-12
Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = -1
Query:  266 PQIQSQNTPSLPHMPCVSTTGNGPNGKTINGFLYRYTKTEVSIVCVCHGTSFSPAEFVLHAGGTDVSQ 469
            P ++   + S P +P VST G GPNG+TI+G  Y++ + EV IVC CHGT  SP EF+ HA     +Q
Sbjct:  391 PNVKFGGSGSYPDLPWVSTIGAGPNGRTISGVTYKFGRNEVKIVCACHGTHMSPEEFMRHASADAPAQ 458          
BLAST of CV884949 vs. ExPASy Swiss-Prot
Match: U7375_ARATH (UPF0737 protein At4g28910 OS=Arabidopsis thaliana GN=AFPH2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.077e-12
Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  269 KEEVATELHGAS---SQNPVSTTENLSPTGSKESKKDVGKPPKPQIQSQNTPSLPHMPCVSTTGNGPNGKTINGFLYRYTKTEVSIVCVCHGTSFSPAEFVLHAGGTDVS 589
            K+ VA E  G+S   S+ P     NL+   S +    +       ++   + + P++P VSTTG+GP+G+TI+G  YRY   ++ IVC CHG+  SP EFV HA    VS
Sbjct:  305 KQPVAEE--GSSEDASERPTGDNSNLNTAFSFDFSA-IKPGMAADVKFGGSGARPNLPWVSTTGSGPHGRTISGVTYRYNANQIKIVCACHGSHMSPEEFVRHASEEYVS 411          
The following BLAST results are available for this feature:
BLAST of CV884949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
U7375_MAIZE3.287e-1458.46UPF0737 protein 5 OS=Zea mays PE=2 SV=1[more]
U737_TOBAC1.632e-1350.70UPF0737 protein mc410 OS=Nicotiana tabacum GN=MC41... [more]
U7374_ARATH2.131e-1343.64UPF0737 protein AFP4 OS=Arabidopsis thaliana GN=AF... [more]
U7373_MAIZE6.200e-1335.11UPF0737 protein 3 OS=Zea mays PE=2 SV=1[more]
U7374_ORYSJ1.058e-1250.82UPF0737 protein Os05g0558800 OS=Oryza sativa subsp... [more]
U7372_MAIZE1.058e-1235.11UPF0737 protein 2 OS=Zea mays PE=2 SV=1[more]
U7371_MAIZE1.058e-1235.11UPF0737 protein 1 OS=Zea mays PE=2 SV=1[more]
U7377_MAIZE2.356e-1237.27UPF0737 protein 7 OS=Zea mays PE=2 SV=1[more]
U7378_MAIZE3.077e-1247.06UPF0737 protein 8 OS=Zea mays PE=2 SV=1[more]
U7375_ARATH3.077e-1238.18UPF0737 protein At4g28910 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011E10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884949 ID=CV884949; Name=CV884949; organism=Citrus sinensis; type=EST; length=907bp
ACTTTAATCCTCTCCGTTGATACAATTAGATGGAGAAACAGGAAAAAGAA
ATGAAAAAAACTTTAGATGAGTCTCTTCCATTCATTTGTTAGGAGGAGCT
CCAGTTAAGTTAAAAAAAAGTACAAATTAAACCGTCGCCATATCTCATAA
GCCTTGCAGAAAAGTGATGACTGGATAAATTGACATGTGAAGGGAATTTC
ATAGCACCACTTTTGCGGCATCATCATCAAATGGCAGATGGAATGACAGT
AATGTGTTTCAGAGGCTGCGATACATCTGTGCCTCCAGCATGCAGCACAA
ACTCAGCCGGTGAGAATGAGGTTCCATGGCAGACACAGACAATGCTGACC
TCCGTTTTCGTATATCTGTACAGAAACCCATTAATGGTTTTCCCATTGGG
ACCATTCCCTGTTGTTGAAACACATGGCATATGAGGAAGGGAAGGTGTAT
TTTGACTCTGAATTTGCGGTTTGGGAGGCTTGCCCACGTCCTTCTTCGAT
TCTTTTGATCCAGTGGGGGACAGATTTTCGGTAGTTGAGACAGGATTCTG
AGAAGAGGCTCCATGAAGTTCTGTTGCAACTTCTTCCTTAGGTTTAGCCG
GGCTGCAGTCCACCGCATTTGATAGAGCCGTTTGCTGCACAAAGTTTGTG
GTACAGTTTGTAGGTGGGCTGCATTGGGCATCCTTAGATGATGTCTTTGG
CTTGCCACTGTTTGAGGGACAATTTGTCATTTCGTCATAAACTTGAGCAG
TCTTCCTGTGTGGGGATGTACTGTGTTCAGATTGGCCCTTCGTATCATCT
GCCTTCGAATTTTGCAATTTCAATTGCTCTGGTGGAGAGTGACTTGAATG
GCTTCTCGTATCACTACTGCCGCCACCTTCATGAGAAGAGCTTCTGTAAT
CCGAAAC
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