CV884908

Overview
NameCV884908
Unique NameCV884908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884908 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.495e-11
Identity = 38/121 (31.40%), Postives = 59/121 (48.76%), Query Frame = 2
Query:  230 FSFAEIKAATNNFDEALLLGVGGFGKVYRGEI-DGATTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAYGTLRE--HLYKTQKPPLPWKQRLEICIG 583
            FS A+++   + F    LLG G  G+VY+ +  DG    V     + L +    EF   +  +S + H+++  L+GYC E    +LVY+Y   G+L    HL      PL W  R+ I +G
Sbjct:  403 FSLADLQNTASCFSPNRLLGEGTIGRVYKAKFQDGRKFAVKEIDSSLLGKGNPEEFSHIVSSISSIHHKNMAELVGYCSEQGRNMLVYEYFTSGSLHRFLHLSDDFSKPLTWNTRIRIALG 523          
BLAST of CV884908 vs. ExPASy Swiss-Prot
Match: CLV1_ARATH (Receptor protein kinase CLAVATA1 OS=Arabidopsis thaliana GN=CLV1 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.962e-11
Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = 2
Query:  272 EALLLGVGGFGKVYRGEIDGATTKVAIKR----GNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAYGTLREHLYKTQKPPLPWKQRLEICIGA 586
            E  ++G GG G VYRG +      VAIKR    G   S+ G   F  EI+ L ++RHRH+V L+GY       +L+Y+YM  G+L E L+ ++   L W+ R  + + A
Sbjct:  694 EENIIGKGGAGIVYRGSMPN-NVDVAIKRLVGRGTGRSDHG---FTAEIQTLGRIRHRHIVRLLGYVANKDTNLLLYEYMPNGSLGELLHGSKGGHLQWETRHRVAVEA 798          
BLAST of CV884908 vs. ExPASy Swiss-Prot
Match: Y1699_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g69990 OS=Arabidopsis thaliana GN=At1g69990 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.787e-11
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  254 ATNNFDEALLLGVGGFGKVYRGEI-DGATTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAYGTLREHLYKTQKPPLPWKQRLEICIGA 586
            ATN FD   ++     G  Y+ ++ DG+T +V  KR +   E    +F++EI  L ++RH +LV L+G+C    E++LVY +MA GTL   L   Q+  + W  R+ + +GA
Sbjct:  291 ATNGFDSGNIVVSSRSGVSYKADLPDGSTLEV--KRLSSCCELSEKQFRSEINKLGQIRHPNLVPLLGFCVVEDEILLVYKHMANGTLYSQL---QQWDIDWPTRVRVAVGA 397          
The following BLAST results are available for this feature:
BLAST of CV884908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
SRF4_ARATH3.495e-1131.40Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
CLV1_ARATH5.962e-1137.61Receptor protein kinase CLAVATA1 OS=Arabidopsis th... [more]
Y1699_ARATH7.787e-1135.71Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011D01_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T3_D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884908 ID=CV884908; Name=CV884908; organism=Citrus sinensis; type=EST; length=586bp
CATAATTGGTGGGGGTGTTGGTGGAGGAATTGCTCTAGCCCTTGTCGTTG
GCTTTTGTGTTTTTGCTGCATCTCGTTGCCGCAGACAAGGGAAGGATCCG
AGCTCAAGTGATGCGCAATCTGGTTGGCTTCCTCTTTCACTCTATGGAAA
TTCACACTCTGCTGGATCAGCCAAGACAAACACTACAGGAAGTTATGCAT
CTTCCCTTCCTTCAAATCTTTGCCGCCACTTCTCATTTGCTGAGATAAAA
GCTGCCACTAACAACTTTGATGAAGCTCTACTTCTTGGGGTTGGAGGCTT
TGGCAAAGTGTACCGTGGAGAAATCGATGGTGCAACAACTAAAGTTGCTA
TCAAGCGTGGGAACCCACTCTCTGAGCAAGGTGTGCATGAGTTCCAGACT
GAGATTGAAATGCTCTCAAAACTTCGACACCGACACCTTGTTTCATTGAT
TGGTTACTGTGAAGAGAACTGTGAAATGATACTTGTATATGATTACATGG
CTTATGGAACACTGAGGGAGCATCTTTACAAAACTCAAAAGCCCCCTCTG
CCATGGAAGCAAAGGCTTGAGATATGTATTGGGGCT
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