CV884903

Overview
NameCV884903
Unique NameCV884903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 48/147 (32.65%), Postives = 79/147 (53.74%), Query Frame = -2
Query:  279 RRIIKETQRLLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA---KHWKTNEAE 668
            + ++ E + L  EP  G   +  ++   Y + V I GP  + YEGG FK  L  P +YP + P  RFLTK++HPNI + G +C+ IL              ++W+P   +RT+LLS+ +LL+ PN   P + + +   + WK ++ +
Sbjct:   11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGK 157          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.239e-17
Identity = 48/147 (32.65%), Postives = 79/147 (53.74%), Query Frame = -2
Query:  279 RRIIKETQRLLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA---KHWKTNEAE 668
            + ++ E + L  EP  G   +  ++   Y + V I GP  + YEGG FK  L  P +YP + P  RFLTK++HPNI + G +C+ IL              ++W+P   +RT+LLS+ +LL+ PN   P + + +   + WK ++ +
Sbjct:   11 KALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGK 157          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.988e-17
Identity = 48/153 (31.37%), Postives = 83/153 (54.25%), Query Frame = -2
Query:  261 RRIIKETQRLLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA---KHWKTNEAEAVETAK 668
            + ++ E + L  EP  G   +  +++  Y + V I GP  + YEGG FK  +  P +YP + P  RFLTK++HPNI + G +C+ IL              ++W+P   +RT+LLS+ +LL+ PN   P + + +   + W+ ++ +  E A+
Sbjct:   11 KALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAE 163          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.988e-17
Identity = 48/153 (31.37%), Postives = 83/153 (54.25%), Query Frame = -2
Query:  261 RRIIKETQRLLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA---KHWKTNEAEAVETAK 668
            + ++ E + L  EP  G   +  +++  Y + V I GP  + YEGG FK  +  P +YP + P  RFLTK++HPNI + G +C+ IL              ++W+P   +RT+LLS+ +LL+ PN   P + + +   + W+ ++ +  E A+
Sbjct:   11 KALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAE 163          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.988e-17
Identity = 48/153 (31.37%), Postives = 83/153 (54.25%), Query Frame = -2
Query:  261 RRIIKETQRLLSEPAPGISASPSEDNMRY-FNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL-------------KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA---KHWKTNEAEAVETAK 668
            + ++ E + L  EP  G   +  +++  Y + V I GP  + YEGG FK  +  P +YP + P  RFLTK++HPNI + G +C+ IL              ++W+P   +RT+LLS+ +LL+ PN   P + + +   + W+ ++ +  E A+
Sbjct:   11 KALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFRKWRDSKGKDKEYAE 163          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 47/137 (34.31%), Postives = 76/137 (55.47%), Query Frame = -2
Query:  276 ISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLT----------------------KIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEA 617
            +   P ED +  ++ +I GP QSP+E  ++KLE+ +P  YP+  PK++F+                       K+ HPN++ K G ICLDIL+ KWSPA  +++ L++I  LL+ P P  PL+ ++A   K ++  A
Sbjct:   32 VDLHPLEDGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCDDTTA 168          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 51/148 (34.46%), Postives = 79/148 (53.38%), Query Frame = -2
Query:  243 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 665
            R+ +E +    +   G  A PS +     N+  +N  I G T++ +EGGV+ L +   E+YP   PK RF    +HPN+   G +CL IL ++  W P++ I+TVLL IQ LL  PNP  P  +     + TN+ E  +  K  +++Y
Sbjct:    8 RLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKVKAQSKVY 155          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC4_WHEAT (Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum aestivum GN=UBC4 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 45/121 (37.19%), Postives = 65/121 (53.72%), Query Frame = -2
Query:  240 DNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKL-GRICLDILKDKWSPALQIRTVL-LSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 596
            D M  F V   GP  S Y+GGV+K+ + L E YP  +P + F  KIYHPN+D++ G +CLD++   WSP   +  +  + +  LL  PNP DPL+   A     ++       KE+   YA
Sbjct:   27 DGMHEFFVHFHGPKDSIYQGGVWKVRVELTEAYPYKSPSIGFTNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNIFEVFLPQLLLYPNPSDPLNGEAASLMMRDKNAYENKVKEYCERYA 147          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.515e-17
Identity = 37/85 (43.53%), Postives = 56/85 (65.88%), Query Frame = -2
Query:  306 PTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 560
            P +  Y+GG FK  + + + YP   PKV+ L KIYHPNID  G +CL+IL+  W+P L + ++L+ +Q L  +PN +DPL++  A
Sbjct:   60 PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAA 144          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.451e-16
Identity = 46/135 (34.07%), Postives = 76/135 (56.30%), Query Frame = -2
Query:  303 SILEMANSNLPR--RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 701
            S+    NS  P   R+ K+ + L   P   ++    +++      +I+ P +  Y+GG F+      E YP+  PKV    KI+HPNID  G+ICL+IL++ WSPAL ++ ++L + +L   PN +DPL++  A+
Sbjct:   22 SVKANTNSTSPAKLRLQKDIEELELPPTVRVNIISLDNHKEMSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAE 156          
The following BLAST results are available for this feature:
BLAST of CV884903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UB2R1_MOUSE2.239e-1732.65Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN2.239e-1732.65Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UB2R2_RABIT4.988e-1731.37Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE4.988e-1731.37Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN4.988e-1731.37Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UBCX_PICAN6.515e-1734.31Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UBC9_DICDI6.515e-1734.46Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC4_WHEAT6.515e-1737.19Ubiquitin-conjugating enzyme E2-23 kDa OS=Triticum... [more]
UBC12_SCHPO6.515e-1743.53NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBC12_CANGA1.451e-1634.07NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884903 ID=CV884903; Name=CV884903; organism=Citrus sinensis; type=EST; length=735bp
TTAGAGTTGAGAAACATGTATATCATCTAATCATACAAGTTCAAAGACAT
GGCTTCCACAAGAAGAAAATAATTGACATGTGCGGTAAGATGGAAGCTTT
CAGAATGTCAAACTCCGAATGTTCAAACATCAATTCAATTCTTCCAAATT
TTCCATTTTAAACAGACAGTGAATAGCATACATTGCACAATTGTTATTTG
AATGAAGTGATATTTTCCACCATGTCATCAAGCACCACTGGCATATAAAC
GTGTCCATTCCTTCGCTGTTTCAACTGCTTCGGCCTCATTTGTTTTCCAG
TGTTTGGCAATGTTCTCGGAGAGAGGATCATCGGGGTTAGGAGCACTCAG
AAGTGCTTGAATGCTCAACAGTACAGTCCGAATCTGGAGAGCTGGACTCC
ACTTGTCTTTCAGAATATCAAGACAAATCCTTCCAAGCTTATCAATGTTA
GGATGATATATCTTGGTAAGAAATCGGACCTTTGGAGCAGCCATTGGATA
TTCTTCAGGCAAAAATAATTCCAATTTGAACACCCCTCCTTCATATGGAG
ATTGCGTCGGACCAAGGATCATCACATTAAAGTATCGCATATTATCTTCC
GAGGGAGATGCACTTATTCCTGGTGCTGGTTCACTGAGGAGACGCTGTGT
TTCCTTGATGATACGTCGAGGGAGATTACTGTTCGCCATTTCCAAGATCG
ATTTTTTTTGTTTTTTAACCTTCTTGTTGTTGCCT
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