CV884903

Overview
NameCV884903
Unique NameCV884903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 45/149 (30.20%), Postives = 77/149 (51.68%), Query Frame = -2
Query:  240 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 665
            R+ +E +    +   G  A P+++     N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP        +  N  E  +  +   + +A
Sbjct:    8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 45/149 (30.20%), Postives = 77/149 (51.68%), Query Frame = -2
Query:  240 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 665
            R+ +E +    +   G  A P+++     N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP        +  N  E  +  +   + +A
Sbjct:    8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 45/149 (30.20%), Postives = 77/149 (51.68%), Query Frame = -2
Query:  240 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 665
            R+ +E +    +   G  A P+++     N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP        +  N  E  +  +   + +A
Sbjct:    8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 45/149 (30.20%), Postives = 77/149 (51.68%), Query Frame = -2
Query:  240 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 665
            R+ +E +    +   G  A P+++     N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP        +  N  E  +  +   + +A
Sbjct:    8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC9_PAGMA (SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ube2i PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 43/121 (35.54%), Postives = 70/121 (57.85%), Query Frame = -2
Query:  324 RIIKETQRLLSEPAPGISASPSEDNMRYFNVM-----ILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDP 665
            R+ +E +    +   G+ A P+++     N+M     I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP
Sbjct:    8 RLAQERKAWRKDHPLGLVAVPTKNPDGTMNLMNGECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDP 128          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 45/149 (30.20%), Postives = 77/149 (51.68%), Query Frame = -2
Query:  240 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 665
            R+ +E +    +   G  A P+++     N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP        +  N  E  +  +   + +A
Sbjct:    8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 45/149 (30.20%), Postives = 77/149 (51.68%), Query Frame = -2
Query:  240 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 665
            R+ +E +    +   G  A P+++     N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP        +  N  E  +  +   + +A
Sbjct:    8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 45/149 (30.20%), Postives = 77/149 (51.68%), Query Frame = -2
Query:  240 RIIKETQRLLSEPAPGISASPSED-----NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 665
            R+ +E +    +   G  A P+++     N+  +   I G   +P+EGG+FKL +   ++YP + PK +F   ++HPN+   G +CL IL++   W PA+ I+ +LL IQ LL+ PN  DP        +  N  E  +  +   + +A
Sbjct:    8 RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC4_MIMIV (Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 40/120 (33.33%), Postives = 67/120 (55.83%), Query Frame = -2
Query:  306 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 665
            R+ +E   ++    P I    +E ++ ++ ++  GP  +PY+ G +   +   EEYP  AP +RF+T I H NI+  GR+C  IL   ++P ++I  +L  I  LL  P+ +DPL  N+A
Sbjct: 1137 RVQREIVDVMKNQHPDIDVYINEQDISFWKIVFKGPDSTPYKNGTWLAYIQFTEEYPNIAPNIRFVTPIKHCNINNYGRVCHSILDRNYTPNVKISLILQCIYGLLLNPDVNDPLDTNLA 1256          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.096e-15
Identity = 35/90 (38.89%), Postives = 58/90 (64.44%), Query Frame = -2
Query:  303 MILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 572
            + + P    Y GG +   +F+ + YPM  P V+ + +IYHPNID  G +CL++L++ W+PAL I+++++ I  L   PN  DPL+++ AK
Sbjct:   63 LAIKPDIGYYAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAAK 152          
The following BLAST results are available for this feature:
BLAST of CV884903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC9_XENTR1.605e-1530.20SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]
UBC9_XENLA1.605e-1530.20SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]
UBC9_SPETR1.605e-1530.20SUMO-conjugating enzyme UBC9 OS=Spermophilus tride... [more]
UBC9_RAT1.605e-1530.20SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_PAGMA1.605e-1535.54SUMO-conjugating enzyme UBC9 OS=Pagrus major GN=ub... [more]
UBC9_MOUSE1.605e-1530.20SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]
UBC9_HUMAN1.605e-1530.20SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
UBC9_CHICK1.605e-1530.20SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U... [more]
UBC4_MIMIV1.605e-1533.33Probable bifunctional E2/E3 enzyme R795 OS=Acantha... [more]
UBC12_KLULA2.096e-1538.89NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884903 ID=CV884903; Name=CV884903; organism=Citrus sinensis; type=EST; length=735bp
TTAGAGTTGAGAAACATGTATATCATCTAATCATACAAGTTCAAAGACAT
GGCTTCCACAAGAAGAAAATAATTGACATGTGCGGTAAGATGGAAGCTTT
CAGAATGTCAAACTCCGAATGTTCAAACATCAATTCAATTCTTCCAAATT
TTCCATTTTAAACAGACAGTGAATAGCATACATTGCACAATTGTTATTTG
AATGAAGTGATATTTTCCACCATGTCATCAAGCACCACTGGCATATAAAC
GTGTCCATTCCTTCGCTGTTTCAACTGCTTCGGCCTCATTTGTTTTCCAG
TGTTTGGCAATGTTCTCGGAGAGAGGATCATCGGGGTTAGGAGCACTCAG
AAGTGCTTGAATGCTCAACAGTACAGTCCGAATCTGGAGAGCTGGACTCC
ACTTGTCTTTCAGAATATCAAGACAAATCCTTCCAAGCTTATCAATGTTA
GGATGATATATCTTGGTAAGAAATCGGACCTTTGGAGCAGCCATTGGATA
TTCTTCAGGCAAAAATAATTCCAATTTGAACACCCCTCCTTCATATGGAG
ATTGCGTCGGACCAAGGATCATCACATTAAAGTATCGCATATTATCTTCC
GAGGGAGATGCACTTATTCCTGGTGCTGGTTCACTGAGGAGACGCTGTGT
TTCCTTGATGATACGTCGAGGGAGATTACTGTTCGCCATTTCCAAGATCG
ATTTTTTTTGTTTTTTAACCTTCTTGTTGTTGCCT
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