CV884903

Overview
NameCV884903
Unique NameCV884903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 43/132 (32.58%), Postives = 67/132 (50.76%), Query Frame = -2
Query:  309 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK--IYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 689
            MA     +R+ KE + ++  P P I A P+EDN+  ++ +I GP  +PY+GG +   L  P +YP   P +R +T    + PN     R+CL   D   D W+P   + T+L     LLS    D+  + +I
Sbjct:    1 MATKQAHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNT----RLCLSMSDYHPDTWNPGWSVSTIL---NGLLSFMTSDEATTGSI 125          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12
Identity = 39/119 (32.77%), Postives = 65/119 (54.62%), Query Frame = -2
Query:  312 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSEN 665
            R+ KE       P  G     + DN++ + + ++G   + Y    ++L++  PE YPM +P+V FL     HP+I   G ICLDIL D WSPA+ + ++ +SI ++LS+       ++N
Sbjct:   19 RLQKELVEWQMNPPTGFKHKVT-DNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTEKQRPTDN 136          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 38/109 (34.86%), Postives = 65/109 (59.63%), Query Frame = -2
Query:  303 GISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDIL--KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 620
            GI+A P  ++M  + V I G   S ++G VF+L +    EY  A P V+F+T  +HPN+D   G+ C+D L   +KW+    + ++LL++Q +LS P  ++P++   A+
Sbjct:   23 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAAR 131          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11
Identity = 37/118 (31.36%), Postives = 63/118 (53.39%), Query Frame = -2
Query:  345 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLS 689
            MA+    +R+ KE + +   P P I A+P EDN+  ++ +I GP ++PYE G +   L  P +YP   P +R LT   +    +  R+CL   D   D W+P+  + T+L  + + ++
Sbjct:    1 MASRQAYKRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYPFNPPAIRMLTP--NGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMT 116          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBCX_PICPA (Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia pastoris GN=PEX4 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 50/185 (27.03%), Postives = 80/185 (43.24%), Query Frame = -2
Query:  255 RRIIKETQRLLSEPAPGISASP------------SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLT----------------------------------KIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 668
            +R+++E + +L E     SAS             SEDN   +   + GPT + Y+   ++L++ +P  YP   PK  F+                                   ++ HPNI    G ICLDIL+ KW+PA  + + L +I  LL+ P P  PL  ++A   K N+ +A  +  E+
Sbjct:    5 KRLLQEYRSILKEQRQKGSASTLSSNGILDLKPVSEDNFYKWTAKLKGPTDTGYQDAFWELQIDIPSNYPTQPPKFTFIVSDDIPRNRRQRQTNQIQDDDEFEGAEKEVLRHCYRMPHPNIAFNTGEICLDILQAKWTPAWTLSSALTAIVLLLNDPEPLSPLDIDMANLMKINDLKAYNSLIEY 189          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11
Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = -2
Query:  312 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSEN 665
            R+ KE     + P  G     S DN++ + + + G   + Y    ++L++  PE YPM AP+V F      HP+I   G ICLD+L D WSPA+++ ++ LSI ++LS+ +      +N
Sbjct:   19 RLQKEFMEWQTNPPSGFKHRVS-DNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSMLSSSSVKQKPKDN 136          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11
Identity = 38/109 (34.86%), Postives = 65/109 (59.63%), Query Frame = -2
Query:  303 GISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 620
            GI+A P  ++M  + V I G   S ++G VF+L +    EY  A P V+F+T  +HPN+D   G+ C+D L +  KW+    + ++LL++Q +LS P  ++P++   A+
Sbjct:   23 GITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAAR 131          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 40/131 (30.53%), Postives = 69/131 (52.67%), Query Frame = -2
Query:  306 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 689
            MA+    +R+ KE + +++ P P I A+P EDN+  ++ +I GP  +PYE G +   L  P +YP   P +R +T   +    +  R+CL   D   + W+PA  + T+L     LLS    D+  + +++
Sbjct:    1 MASIQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITP--NGRFKENTRLCLSMSDYHPEAWNPAWSVVTIL---NGLLSFMTGDEQTTGSVS 126          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11
Identity = 40/130 (30.77%), Postives = 66/130 (50.77%), Query Frame = -2
Query:  309 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 689
            MA     +R+ KE + ++  P P I A P+E+N+  ++ +I GP  +PY+GG +   L  P +YP   P +R +T   +    +  R+CL   D   D W+P   + T+L     LLS    D+  + +I
Sbjct:    1 MATKQAQKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKENTRLCLSMSDYHPDTWNPGWSVATIL---NGLLSFMTGDESTTGSI 125          
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = -2
Query:  342 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 665
            R+ KE       P  G     + DN++ + + + G   + Y    + L++  P+ YPM AP+V F+     HP+I   G ICLDIL D WSPA+ + +V +SI ++LS+
Sbjct:   19 RLQKELSEWQVNPPTGFKHRVT-DNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126          
The following BLAST results are available for this feature:
BLAST of CV884903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC6_YEAST6.310e-1232.58Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UBC16_ARATH6.310e-1232.77Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UBE2U_HUMAN1.076e-1134.86Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBC6_ASHGO1.076e-1131.36Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossyp... [more]
UBCX_PICPA1.406e-1127.03Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia p... [more]
UBC17_ARATH1.406e-1133.61Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
UBE2U_MACFA2.398e-1134.86Ubiquitin-conjugating enzyme E2 U OS=Macaca fascic... [more]
UBC6_KLULA3.132e-1130.53Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC6_CANGA3.132e-1130.77Ubiquitin-conjugating enzyme E2 6 OS=Candida glabr... [more]
UBC18_ARATH4.090e-1134.86Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884903 ID=CV884903; Name=CV884903; organism=Citrus sinensis; type=EST; length=735bp
TTAGAGTTGAGAAACATGTATATCATCTAATCATACAAGTTCAAAGACAT
GGCTTCCACAAGAAGAAAATAATTGACATGTGCGGTAAGATGGAAGCTTT
CAGAATGTCAAACTCCGAATGTTCAAACATCAATTCAATTCTTCCAAATT
TTCCATTTTAAACAGACAGTGAATAGCATACATTGCACAATTGTTATTTG
AATGAAGTGATATTTTCCACCATGTCATCAAGCACCACTGGCATATAAAC
GTGTCCATTCCTTCGCTGTTTCAACTGCTTCGGCCTCATTTGTTTTCCAG
TGTTTGGCAATGTTCTCGGAGAGAGGATCATCGGGGTTAGGAGCACTCAG
AAGTGCTTGAATGCTCAACAGTACAGTCCGAATCTGGAGAGCTGGACTCC
ACTTGTCTTTCAGAATATCAAGACAAATCCTTCCAAGCTTATCAATGTTA
GGATGATATATCTTGGTAAGAAATCGGACCTTTGGAGCAGCCATTGGATA
TTCTTCAGGCAAAAATAATTCCAATTTGAACACCCCTCCTTCATATGGAG
ATTGCGTCGGACCAAGGATCATCACATTAAAGTATCGCATATTATCTTCC
GAGGGAGATGCACTTATTCCTGGTGCTGGTTCACTGAGGAGACGCTGTGT
TTCCTTGATGATACGTCGAGGGAGATTACTGTTCGCCATTTCCAAGATCG
ATTTTTTTTGTTTTTTAACCTTCTTGTTGTTGCCT
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