CV884903
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12 Identity = 43/132 (32.58%), Postives = 67/132 (50.76%), Query Frame = -2 Query: 309 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTK--IYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 689 MA +R+ KE + ++ P P I A P+EDN+ ++ +I GP +PY+GG + L P +YP P +R +T + PN R+CL D D W+P + T+L LLS D+ + +I Sbjct: 1 MATKQAHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNT----RLCLSMSDYHPDTWNPGWSVSTIL---NGLLSFMTSDEATTGSI 125
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.310e-12 Identity = 39/119 (32.77%), Postives = 65/119 (54.62%), Query Frame = -2 Query: 312 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSEN 665 R+ KE P G + DN++ + + ++G + Y ++L++ PE YPM +P+V FL HP+I G ICLDIL D WSPA+ + ++ +SI ++LS+ ++N Sbjct: 19 RLQKELVEWQMNPPTGFKHKVT-DNLQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTEKQRPTDN 136
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11 Identity = 38/109 (34.86%), Postives = 65/109 (59.63%), Query Frame = -2 Query: 303 GISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDIL--KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 620 GI+A P ++M + V I G S ++G VF+L + EY A P V+F+T +HPN+D G+ C+D L +KW+ + ++LL++Q +LS P ++P++ A+ Sbjct: 23 GITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAAR 131
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC6_ASHGO (Ubiquitin-conjugating enzyme E2 6 OS=Ashbya gossypii GN=UBC6 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.076e-11 Identity = 37/118 (31.36%), Postives = 63/118 (53.39%), Query Frame = -2 Query: 345 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLS 689 MA+ +R+ KE + + P P I A+P EDN+ ++ +I GP ++PYE G + L P +YP P +R LT + + R+CL D D W+P+ + T+L + + ++ Sbjct: 1 MASRQAYKRLSKEYKMMTENPPPYIVAAPKEDNILVWHYVITGPPETPYEDGQYHGTLVFPNDYPFNPPAIRMLTP--NGRFRENTRLCLSMSDYHPDTWNPSWSVATILTGLLSFMT 116
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBCX_PICPA (Ubiquitin-conjugating enzyme E2-24 kDa OS=Pichia pastoris GN=PEX4 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11 Identity = 50/185 (27.03%), Postives = 80/185 (43.24%), Query Frame = -2 Query: 255 RRIIKETQRLLSEPAPGISASP------------SEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLT----------------------------------KIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEW 668 +R+++E + +L E SAS SEDN + + GPT + Y+ ++L++ +P YP PK F+ ++ HPNI G ICLDIL+ KW+PA + + L +I LL+ P P PL ++A K N+ +A + E+ Sbjct: 5 KRLLQEYRSILKEQRQKGSASTLSSNGILDLKPVSEDNFYKWTAKLKGPTDTGYQDAFWELQIDIPSNYPTQPPKFTFIVSDDIPRNRRQRQTNQIQDDDEFEGAEKEVLRHCYRMPHPNIAFNTGEICLDILQAKWTPAWTLSSALTAIVLLLNDPEPLSPLDIDMANLMKINDLKAYNSLIEY 189
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.406e-11 Identity = 40/119 (33.61%), Postives = 65/119 (54.62%), Query Frame = -2 Query: 312 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSEN 665 R+ KE + P G S DN++ + + + G + Y ++L++ PE YPM AP+V F HP+I G ICLD+L D WSPA+++ ++ LSI ++LS+ + +N Sbjct: 19 RLQKEFMEWQTNPPSGFKHRVS-DNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSMLSSSSVKQKPKDN 136
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBE2U_MACFA (Ubiquitin-conjugating enzyme E2 U OS=Macaca fascicularis GN=UBE2U PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.398e-11 Identity = 38/109 (34.86%), Postives = 65/109 (59.63%), Query Frame = -2 Query: 303 GISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLSENIAK 620 GI+A P ++M + V I G S ++G VF+L + EY A P V+F+T +HPN+D G+ C+D L + KW+ + ++LL++Q +LS P ++P++ A+ Sbjct: 23 GITARPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFVTIPFHPNVDPHTGQPCIDFLDNPKKWNTNYTLSSILLALQVMLSNPVLENPVNLEAAR 131
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11 Identity = 40/131 (30.53%), Postives = 69/131 (52.67%), Query Frame = -2 Query: 306 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIA 689 MA+ +R+ KE + +++ P P I A+P EDN+ ++ +I GP +PYE G + L P +YP P +R +T + + R+CL D + W+PA + T+L LLS D+ + +++ Sbjct: 1 MASIQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITP--NGRFKENTRLCLSMSDYHPEAWNPAWSVVTIL---NGLLSFMTGDEQTTGSVS 126
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC6_CANGA (Ubiquitin-conjugating enzyme E2 6 OS=Candida glabrata GN=UBC6 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.132e-11 Identity = 40/130 (30.77%), Postives = 66/130 (50.77%), Query Frame = -2 Query: 309 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENI 689 MA +R+ KE + ++ P P I A P+E+N+ ++ +I GP +PY+GG + L P +YP P +R +T + + R+CL D D W+P + T+L LLS D+ + +I Sbjct: 1 MATKQAQKRLTKEYKMMVENPPPFIIARPNEENILEWHYVISGPPDTPYDGGQYHGTLTFPSDYPYKPPAIRMITP--NGRFKENTRLCLSMSDYHPDTWNPGWSVATIL---NGLLSFMTGDESTTGSI 125
BLAST of CV884903 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.090e-11 Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = -2 Query: 342 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKI-YHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSA 665 R+ KE P G + DN++ + + + G + Y + L++ P+ YPM AP+V F+ HP+I G ICLDIL D WSPA+ + +V +SI ++LS+ Sbjct: 19 RLQKELSEWQVNPPTGFKHRVT-DNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLSS 126 The following BLAST results are available for this feature:
BLAST of CV884903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 250
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884903 ID=CV884903; Name=CV884903; organism=Citrus sinensis; type=EST; length=735bpback to top |