CV884899

Overview
NameCV884899
Unique NameCV884899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_CLOAB (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Clostridium acetobutylicum GN=panB PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.067e-29
Identity = 64/151 (42.38%), Postives = 96/151 (63.58%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHSPYKMSSS 471
            + IV+A I VMGH+GLTPQ+++  GGF+ QGKN++ A +++E A  ++  G F++ LE          T ++ IPTIGIGAG  C GQ+LVY D+LGM      + + PKF K++  +GD + +A   Y +EV  G+FP  +HS +K+  S
Sbjct:  125 KAIVDAQIPVMGHIGLTPQSVNAFGGFKIQGKNISKAKELIEDAKKIEAAGAFAITLEGIPEKLAKIITESITIPTIGIGAGKHCDGQILVYQDMLGMF-----SDLAPKFVKRYGNIGDDMKEAFNSYAKEVREGTFPDEAHS-FKIDQS 269          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_CLOB1 (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=panB PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.821e-29
Identity = 64/144 (44.44%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            + IV+A I VMGH+GLTPQ++++ GGF+ QGKN   A K++E A  L+E G FS+VLEC         + ++ IPTIGIGAG +C GQ+LVY D+L M      +   PKF K F  +G+ I     +Y +EV    FP   H+
Sbjct:  125 KAIVKAQIPVMGHIGLTPQSVNMFGGFKVQGKNEKVAKKLIEDAKILEEAGAFSIVLECIPEKLSKIISESISIPTIGIGAGKYCDGQILVYQDMLSMF-----SDFKPKFVKSFGNIGESIKDGVSQYIKEVKEVKFPEEKHA 263          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_PELPD (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Pelobacter propionicus (strain DSM 2379) GN=panB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.378e-29
Identity = 69/144 (47.92%), Postives = 90/144 (62.50%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            R +    I VMGH+GLTPQ+I  +GG+R QG+    A +++E ALA+Q  G FS+VLE          T+ L IPTIGIGAGP C GQVLV HD+LG+ +     K +PKF K++A +  VI  A   Y EEV +G+FP   HS
Sbjct:  130 RAVTSIDIPVMGHIGLTPQSIHRMGGYRVQGRK-EQAERIMEDALAVQAAGAFSIVLEGIPSSLAASITAELSIPTIGIGAGPDCDGQVLVIHDILGLCE-----KYSPKFVKRYAELAPVITDAVNRYVEEVRSGAFPTEEHS 267          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_CLOBM (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=panB PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.378e-29
Identity = 63/144 (43.75%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            + IV+A I VMGH+GLTPQ++++ GGF+ QGKN   A K++E A  L+E G F++VLEC         + ++ IPTIGIGAG +C GQ+LVY D+L M      +   PKF K F  +G+ I     +Y +EV    FP   H+
Sbjct:  125 KAIVKAQIPVMGHIGLTPQSVNMFGGFKVQGKNEKVAKKLIEDAKILEEAGAFAIVLECIPEKLSKIISESISIPTIGIGAGKYCDGQILVYQDMLSMF-----SDFKPKFVKSFGSIGESIKDGVSQYIKEVKEAKFPEEKHA 263          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_CLOBA (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=panB PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.056e-29
Identity = 73/169 (43.20%), Postives = 99/169 (58.58%), Query Frame = 1
Query:    1 SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHSPYKMSSSDCNGFFNELQKL 507
            S I   + IV+A I VMGH+GLTPQ+++  GGF+ QGK+  +A +++E A  +++ G F++VLEC         T  + IPTIGIGAG  C GQ+LVY D+LGM          PKF KQ+A +G  + +A   Y  EV  GSFP   HS +K+          ELQKL
Sbjct:  119 SVIKQIKAIVDAQIPVMGHLGLTPQSVNAFGGFKIQGKSEEAAKRLIEDAKLIEDAGAFAIVLECVPKKVAEIITKEISIPTIGIGAGNECDGQILVYQDMLGMFD-----DFIPKFVKQYANLGAQMREAIQIYIGEVGEGSFPQDKHS-FKIDE-------KELQKL 274          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_GEOSL (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Geobacter sulfurreducens GN=panB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.298e-29
Identity = 68/144 (47.22%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            R IV+  I VM H+GLTPQ+I  +GG++ QGK    A +++E ALA+QE G F+VVLE          T+ L IPTIGIGAGP C GQVLV HD+LG+ +     K +PKF K++     +I+ A   Y  EV  G FP   HS
Sbjct:  127 RAIVDMDIPVMAHIGLTPQSIHRMGGYKVQGKKDEQAQRLLEDALAVQEAGAFAVVLEGIPLKLAGRITAELSIPTIGIGAGPHCDGQVLVIHDILGLCE-----KYSPKFVKRYGDARTLISDAVASYISEVKKGEFPTEGHS 265          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_GEOLS (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=panB PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.298e-29
Identity = 67/144 (46.53%), Postives = 92/144 (63.89%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            R + E  I VMGHVGLTPQ++  +GG++ QG+    A +++E A A+QE G F+VVLE          T  L+IPTIGIGAGP C GQVLV HD+LG+ +     K +PKF K++A +  +I +A  +Y  EV +G+FP   HS
Sbjct:  127 RAVTEMDIPVMGHVGLTPQSVHRMGGYKVQGRK-DQAERILEDAHAVQEAGAFAVVLEGIPAKLAARITEMLEIPTIGIGAGPACDGQVLVIHDILGLCE-----KYSPKFVKRYADLAPLITEAARQYVSEVKDGTFPTEEHS 264          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_PELCD (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=panB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 6.919e-29
Identity = 67/144 (46.53%), Postives = 91/144 (63.19%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            R +V+  I V+GH+GLTPQ+I  +GG++ QGK+   A +++  A A+QE G F+VVLE          T AL IPTIGIGAG  C GQVLV HD+LG+ +     K +P+F K++A V  +I +   EY  +V  G FPGP HS
Sbjct:  127 RTLVDMDIPVVGHIGLTPQSIHRMGGYKVQGKHDQQARQLMRDARAVQEAGAFAVVLEGIPAGLAGQITEALDIPTIGIGAGVDCDGQVLVIHDILGLCE-----KYSPRFVKRYADVASIIRQGVKEYIGDVKQGVFPGPEHS 265          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_LEPBL (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=panB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.037e-29
Identity = 66/140 (47.14%), Postives = 86/140 (61.43%), Query Frame = 1
Query:   31 EAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            + GI VMGH+GLTPQ++ V GG R QGK   S+ K++  A+AL E G FS+VLE          +  + +PTIGIGAGP C GQVLV +DLLG+      A   PKF K+F+ +  ++  A   Y EEV +G FPG  HS
Sbjct:  130 QIGIPVMGHLGLTPQSVHVFGGHRVQGKGEESSAKLLREAVALSESGAFSIVLEMIPAELGKRVSEEVGVPTIGIGAGPDCDGQVLVLNDLLGL-----DANFQPKFLKKFSNLHSIVKDAIESYHEEVRSGEFPGKDHS 264          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_DESDG (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Desulfovibrio desulfuricans (strain G20) GN=panB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.037e-29
Identity = 65/142 (45.77%), Postives = 87/142 (61.27%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            +V+AGI VMGH+GLTPQ ++ LGGF+ QG++  +A  + E A  L++ GCF++VLE          T    IPTIGIGAG  C GQVLV HD+LG+       + TPKF K++A +     KA  +Y +EV  G FP   HS
Sbjct:  133 LVKAGIPVMGHIGLTPQRVAALGGFKVQGRSAAAARSLAEDARILEDAGCFALVLEAIPAPVAAHITRTSGIPTIGIGAGAQCDGQVLVVHDMLGLFD-----RFTPKFVKRYAELRGHAVKAVQQYGDEVRQGEFPAAQHS 269          
The following BLAST results are available for this feature:
BLAST of CV884899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PANB_CLOAB1.067e-2942.383-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_CLOB11.821e-2944.443-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_PELPD2.378e-2947.923-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_CLOBM2.378e-2943.753-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_CLOBA4.056e-2943.203-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_GEOSL5.298e-2947.223-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_GEOLS5.298e-2946.533-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_PELCD6.919e-2946.533-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_LEPBL9.037e-2947.143-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_DESDG9.037e-2945.773-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884899 ID=CV884899; Name=CV884899; organism=Citrus sinensis; type=EST; length=823bp
TCACGAATTACAGCAGCAAGAGGAATTGTTGAAGCTGGAATTGCAGTTAT
GGGGCATGTGGGACTTACCCCTCAAGCCATTAGTGTTCTTGGGGGATTCA
GGCCTCAAGGGAAAAATGTTACTAGTGCTGTCAAGGTTGTGGAGACTGCT
CTGGCTTTGCAAGAAGTCGGATGTTTCTCAGTTGTTTTGGAATGTGTGCC
CCCGCCTGTGGCTGCTGCAGCTACATCTGCTCTTCAAATTCCTACCATTG
GCATTGGAGCTGGACCCTTCTGCAGTGGCCAGGTGCTAGTTTACCATGAT
CTTTTAGGGATGATGCAACACCCACATCATGCCAAGGTCACTCCGAAGTT
CTGCAAGCAGTTTGCACGTGTTGGAGATGTCATAAACAAAGCTCCATTGG
AGTACAAGGAAGAAGTAACAAATGGTTCATTCCCTGGTCCCAGTCACAGC
CCTTATAAAATGTCTAGTAGTGATTGTAATGGTTTCTTCAATGAGTTACA
GAAGCTGGGTTTCGACAAAGCAGCAGCGGTGGCTGCTGAAGCAGCTGAGA
AGATTGATACAGCTAAATAACCTGATGAAGGAAATTCAGCAAGGCAATGA
ATATGCTCAATCCAGCCAGAGAGCCACTTTCACTCGGCTCCTCTTTCGCT
GATTAAACAAAGTGTAGAAGCTACAAATAACAGTGGCGTTTTGGGCTGTT
TTGGTTGTCTTATGACATTAACTTATTTGATTAGCATGGTTGTAGTTTTT
GAACAAACTGAAATACACAGAATAAATAGATAAAGAAGACGCCGTTACTT
ATACAATGGCGATACTTTTACCT
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