CV884899

Overview
NameCV884899
Unique NameCV884899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_ANATD (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=panB PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.434e-28
Identity = 63/142 (44.37%), Postives = 88/142 (61.97%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            +++A I VMGH+GLTPQ++++ GG+  + K    A K+VE A  L++ G F++VLE            +L +P IGIGAGP+C GQVLV +D+LGM     +    PKF K++A VG++I  A   Y EEV  G FPG  HS
Sbjct:  127 VIKAQIPVMGHLGLTPQSVNIFGGYDLRAKEEAEAKKLVEDAKKLEKAGVFAIVLEKVPSHVAKEVQRSLNVPVIGIGAGPYCDGQVLVCYDMLGM-----YEDFKPKFVKRYAEVGNMIKDAVTRYIEEVKKGEFPGKEHS 263          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_LEGPL (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Legionella pneumophila (strain Lens) GN=panB PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.485e-28
Identity = 65/142 (45.77%), Postives = 86/142 (60.56%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            +V AGI VMGH+GLTPQ+I  LGG++ QGKN   A  +++ A  L++ GCF+VV+EC         T +L IPTIGIGAGP   GQVLV+HD+LG+          PKF K++ R  D   +A   Y ++V    FP   HS
Sbjct:  125 LVNAGIPVMGHIGLTPQSIHQLGGYKIQGKNSEQAETLLQQATTLEQAGCFAVVIECVPQDLAKTITDSLVIPTIGIGAGPGTDGQVLVWHDMLGL-----QTSFNPKFVKKYFRAKDHFIEALNSYVQQVQQMHFPANEHS 261          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_PYRAE (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Pyrobaculum aerophilum GN=panB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.857e-28
Identity = 62/141 (43.97%), Postives = 84/141 (59.57%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSH 447
            +V+AGI VMGH+GL PQ +  LGGF+  G+      K+++ A AL++ G FS+V+E          T A+ IPTI IGAGP C GQ+LV HD++G+ + P      P F K++A V DVI  A  +Y  EV  G FP   H
Sbjct:  125 LVKAGIPVMGHIGLNPQRVLALGGFKMVGRTEEQRRKLLDDAKALRDAGAFSLVIEFVPASVAKEITEAVDIPTICIGAGPHCDGQILVLHDIIGLTERP------PSFAKRYANVADVIRSAVKQYVNEVKTGQFPSKEH 259          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_CAMJR (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Campylobacter jejuni (strain RM1221) GN=panB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.857e-28
Identity = 63/142 (44.37%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            I ++GI V+ H+GLTPQA+++LGG+R QGK++ SA K+++ A A+Q+ G   +VLEC         +S L+IPTIGIG+G +C GQVLVYHDLLG+     +     KF K F ++   +     +Y++EV +G FP   HS
Sbjct:  127 ISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQSAQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHDLLGL-----NKDFKAKFVKHFDKIDPQVGVE--KYRDEVKSGIFPSEEHS 261          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_CAMJE (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Campylobacter jejuni GN=panB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.857e-28
Identity = 63/142 (44.37%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            I ++GI V+ H+GLTPQA+++LGG+R QGK++ SA K+++ A A+Q+ G   +VLEC         +S L+IPTIGIG+G +C GQVLVYHDLLG+     +     KF K F ++   +     +Y++EV +G FP   HS
Sbjct:  127 ISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQSAQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHDLLGL-----NKDFKAKFVKHFDKIDPQVGVE--KYRDEVKSGIFPSQEHS 261          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_CAMJD (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=panB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.857e-28
Identity = 64/142 (45.07%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            I ++GI V+ H+GLTPQA+++LGG+R QGK++ SA K+++ A A+Q+ G   +VLEC         +S L+IPTIGIG+G +C GQVLVYHDLLG+     +     KF K F ++   I     +Y++EV +G FP   HS
Sbjct:  127 ISQSGIPVVAHLGLTPQAVNILGGYRIQGKDLQSAQKIIDDAKAVQDSGACMLVLECVPIKLAQKISSILEIPTIGIGSGKYCDGQVLVYHDLLGL-----NKDFKAKFVKHFDKIDPQIGVE--KYRDEVKSGIFPSEEHS 261          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_CAMJ8 (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=panB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.857e-28
Identity = 63/142 (44.37%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            I ++GI V+ H+GLTPQA+++LGG+R QGK++ SA K+++ A A+Q+ G   +VLEC         +S L+IPTIGIG+G +C GQVLVYHDLLG+     +     KF K F ++   +     +Y++EV +G FP   HS
Sbjct:  127 ISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQSAQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHDLLGL-----NKDFKAKFVKHFDKIDPQVGVE--KYRDEVKSGIFPSQEHS 261          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_BDEBA (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Bdellovibrio bacteriovorus GN=panB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.857e-28
Identity = 67/144 (46.53%), Postives = 90/144 (62.50%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            R +V++G+ VMGH+GLTPQ+++ LGGF+ QG++  +  K++E AL LQ+ G FSVVLEC         T+AL+IPTIGIGAG  C GQVLV  D+LGM Q        PKF K +    + I  A  +Y +EV+   FP    S
Sbjct:  123 RHLVDSGVPVMGHLGLTPQSVNQLGGFKVQGRDEKAQKKILEAALQLQDAGAFSVVLECVPSKLAKEITAALEIPTIGIGAGVDCDGQVLVLQDMLGMNQ-----GFKPKFVKTYLDGFNTIKGALNQYHQEVSTEIFPSEKES 261          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_ANADF (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=panB PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.857e-28
Identity = 67/148 (45.27%), Postives = 88/148 (59.46%), Query Frame = 1
Query:    7 ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            +   R I  AG+ VMGH+GLTPQA+  +GG+  QGK+   A +++  A AL+  GC+++VLEC         +S L+IPTIGIGAG  C GQVLV +DLLGM         TPKF K+F  +G  I+ A   Y  EV    FP  +HS
Sbjct:  133 VEVIRRIARAGVPVMGHIGLTPQAVHRMGGYVVQGKDSEKAQQLLRDARALELAGCYAIVLECIPAELARIISSQLRIPTIGIGAGLHCDGQVLVLNDLLGM-----DDAFTPKFVKRFGEIGQAISTAVGAYVGEVKRRVFPDDAHS 275          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_THET2 (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=panB PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 7.650e-28
Identity = 62/144 (43.06%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            RG+V AG+ V+GHVGLTPQ  S LGG++ QG+    A ++++ ALAL+E G + VVLE          T  L + T+GIGAGP    QVLV+HD++G+     +    P+F K++   G +I +A   Y +EV  G FPG  HS
Sbjct:  122 RGLVRAGVPVLGHVGLTPQTASQLGGYKLQGRRPEEAERILKGALALEEAGAYGVVLEMVPARLAKEVTERLSVHTVGIGAGPHTDAQVLVFHDVVGL-----YGDFKPRFVKRYLEAGRLIQEALSRYAQEVREGVFPGEEHS 260          
The following BLAST results are available for this feature:
BLAST of CV884899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PANB_ANATD3.434e-2844.373-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_LEGPL4.485e-2845.773-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_PYRAE5.857e-2843.973-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_CAMJR5.857e-2844.373-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_CAMJE5.857e-2844.373-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_CAMJD5.857e-2845.073-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_CAMJ85.857e-2844.373-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_BDEBA5.857e-2846.533-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_ANADF5.857e-2845.273-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_THET27.650e-2843.063-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884899 ID=CV884899; Name=CV884899; organism=Citrus sinensis; type=EST; length=823bp
TCACGAATTACAGCAGCAAGAGGAATTGTTGAAGCTGGAATTGCAGTTAT
GGGGCATGTGGGACTTACCCCTCAAGCCATTAGTGTTCTTGGGGGATTCA
GGCCTCAAGGGAAAAATGTTACTAGTGCTGTCAAGGTTGTGGAGACTGCT
CTGGCTTTGCAAGAAGTCGGATGTTTCTCAGTTGTTTTGGAATGTGTGCC
CCCGCCTGTGGCTGCTGCAGCTACATCTGCTCTTCAAATTCCTACCATTG
GCATTGGAGCTGGACCCTTCTGCAGTGGCCAGGTGCTAGTTTACCATGAT
CTTTTAGGGATGATGCAACACCCACATCATGCCAAGGTCACTCCGAAGTT
CTGCAAGCAGTTTGCACGTGTTGGAGATGTCATAAACAAAGCTCCATTGG
AGTACAAGGAAGAAGTAACAAATGGTTCATTCCCTGGTCCCAGTCACAGC
CCTTATAAAATGTCTAGTAGTGATTGTAATGGTTTCTTCAATGAGTTACA
GAAGCTGGGTTTCGACAAAGCAGCAGCGGTGGCTGCTGAAGCAGCTGAGA
AGATTGATACAGCTAAATAACCTGATGAAGGAAATTCAGCAAGGCAATGA
ATATGCTCAATCCAGCCAGAGAGCCACTTTCACTCGGCTCCTCTTTCGCT
GATTAAACAAAGTGTAGAAGCTACAAATAACAGTGGCGTTTTGGGCTGTT
TTGGTTGTCTTATGACATTAACTTATTTGATTAGCATGGTTGTAGTTTTT
GAACAAACTGAAATACACAGAATAAATAGATAAAGAAGACGCCGTTACTT
ATACAATGGCGATACTTTTACCT
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