CV884899

Overview
NameCV884899
Unique NameCV884899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_METS4 (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Methylobacterium sp. (strain 4-46) GN=panB PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.650e-28
Identity = 65/150 (43.33%), Postives = 88/150 (58.67%), Query Frame = 1
Query:    1 SRITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            +R+     +V   I VMGH+GLTPQ+++ +GGF+ QG+ V  A ++VE A  L++ GCFS+VLE          T AL IPTIGIGAGP C+GQVLV HDLLG++          KF + +     ++      Y E+V  G FPGP  S
Sbjct:  131 ARVPVVEALVACEIPVMGHLGLTPQSVNAMGGFKVQGRAVAQARRIVEDAKRLEDAGCFSLVLEGIPAELAARITEALAIPTIGIGAGPHCAGQVLVLHDLLGLLPGR-----KAKFVRTYVDGYGLLQAGLAAYAEDVRAGRFPGPEES 275          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_HYPBU (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=panB PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 7.650e-28
Identity = 63/140 (45.00%), Postives = 84/140 (60.00%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPG 438
            R +V AGI V+ HVGLTPQ   +LGG+R  GK  + A++V+  A+  +E G F+VV+E          T  L IPTI IG+GP+C GQVLV HDLLG+   P      P F K++  +  +I +A  EY  +V NG FPG
Sbjct:  128 RALVRAGIPVVAHVGLTPQRYKLLGGYRLAGKTASEAMEVIREAIGAEEAGAFAVVIEFTAWEVAREITRKLSIPTICIGSGPYCDGQVLVIHDLLGLTPTP------PPFAKKYVDLAAIIRRAVSEYASDVRNGRFPG 261          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_CLOD6 (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Clostridium difficile (strain 630) GN=panB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.991e-28
Identity = 64/148 (43.24%), Postives = 88/148 (59.46%), Query Frame = 1
Query:    7 ITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            I     IV A I VMGH+GLTPQ+++  GGF+ QG    +A +++E A  +++ G FS+VLE          T+++ IPTIGIGAG  C GQ+LVY D+LGM          PKF KQ+A +GD++  +   Y  EV  G+FP   HS
Sbjct:  121 IKQIESIVNAQIPVMGHLGLTPQSVNSFGGFKVQGNTSETARQLIEDAKLIEKAGAFSIVLEGVPTKIAEMVTNSISIPTIGIGAGINCDGQILVYQDMLGMF-----GDFVPKFVKQYANIGDIMKDSIKNYILEVNTGAFPQEKHS 263          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_THENN (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=panB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.305e-27
Identity = 65/141 (46.10%), Postives = 90/141 (63.83%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSH 447
            +VE+GI VMGH+GLTPQ ++  GG+R QGK   S   ++ +A  L++ G F++VLE          T  + IPTIGIG+G FC GQVLV+HDLLG+  +P  A   P+F K++A + + I KA  E+K+EV  G FP   H
Sbjct:  123 LVESGIPVMGHIGLTPQFVNRFGGYRVQGKTEKSREYLLRSARELEKRGAFAIVLEMVVEEVAKEITEGISIPTIGIGSGRFCDGQVLVWHDLLGL--NPDFA---PRFSKRYANLYETILKALQEFKKEVKEGIFPSEEH 258          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_NOCFA (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Nocardia farcinica GN=panB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.305e-27
Identity = 65/142 (45.77%), Postives = 85/142 (59.86%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            +  AGI VM H+G TPQ+++ LGGFR QG+    A +++  A+A+QE G FSVV+E          T  L IPTIGIGAGP C  QVLV+ D+ G     + +  T KF K+F  +GD +  A   Y  EV  G+FPGP HS
Sbjct:  147 LTAAGIPVMAHIGFTPQSVNTLGGFRVQGRG-DGAEQLIADAIAVQEAGAFSVVMEMVPAELAGQVTRKLTIPTIGIGAGPDCDAQVLVWQDMAG-----YTSGKTAKFVKRFGDIGDQLRAAAAAYAAEVREGTFPGPEHS 282          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_LEPBJ (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=panB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.305e-27
Identity = 65/140 (46.43%), Postives = 85/140 (60.71%), Query Frame = 1
Query:   31 EAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            + GI VMGH+GLTPQ++ V GG R QGK   S+ K++  A+AL E G FS+VLE          +  + + TIGIGAGP C GQVLV +DLLG+      A   PKF K+F+ +  ++  A   Y EEV +G FPG  HS
Sbjct:  130 QIGIPVMGHLGLTPQSVHVFGGHRVQGKGEESSAKLLREAVALSESGAFSIVLEMIPAELGKRVSEEVGVLTIGIGAGPDCDGQVLVLNDLLGL-----DANFQPKFLKKFSNLHSIVKDAIESYHEEVRSGEFPGKDHS 264          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_DEHSB (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Dehalococcoides sp. (strain BAV1) GN=panB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.305e-27
Identity = 63/137 (45.99%), Postives = 86/137 (62.77%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFP 435
            IV+ GI VMGH+GLTPQ+++ L GF+ QGK + +A+ ++E A AL++ G F++VLE          T+ + IPTIGIGAG  C GQV V  D+LGM          PK  K++A +  +I KA  EY  EVT G+FP
Sbjct:  127 IVDCGIPVMGHIGLTPQSVNQLSGFKVQGKTLATALSLIEDAKALEKAGAFAIVLETMPAELAAIITAGISIPTIGIGAGEECDGQVQVISDMLGMF-----TDFIPKHTKRYADLNGIITKAVSEYAAEVTKGAFP 258          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_CENSY (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Cenarchaeum symbiosum GN=panB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.305e-27
Identity = 65/157 (41.40%), Postives = 94/157 (59.87%), Query Frame = 1
Query:   13 AARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHSPYKMSSSDCNG 483
            A RG+  AGI VMGH+GL PQ  ++ GG+R QG+   SA+++ E A AL+E G F++VLE          T ++ +PTIGIG+G  C GQVLV HD+LG+     + +  PKF K +A +   +  A   +K EV +  FP P +S Y M + + +G
Sbjct:  109 AVRGVTGAGIPVMGHIGLLPQTAALSGGYRVQGRTRESALRLAEDAKALEEAGAFAIVLEMVAEEAARMVTKSVGVPTIGIGSGAGCDGQVLVLHDMLGL-----YGRFRPKFAKVYADLSGEVAGAVAGFKAEVESSQFPRPENSFY-MDAGEADG 259          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_CAMJJ (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Campylobacter jejuni subsp. jejuni serotype O:23/36 (strain 81-176) GN=panB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.305e-27
Identity = 62/142 (43.66%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            I ++GI V+ H+GLTPQA+++LGG+R QGK++ SA K+++ A A+Q+ G   +V+EC         +S L+IPTIGIG+G +C GQVLVYHDLLG+     +     KF K F ++   +     +Y++EV +G FP   HS
Sbjct:  127 ISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQSAQKIIDDAKAVQDAGACMLVVECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHDLLGL-----NKDFKAKFVKHFDKIDPQVGVE--KYRDEVKSGIFPSQEHS 261          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_THESQ (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Thermotoga sp. (strain RQ2) GN=panB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.704e-27
Identity = 65/142 (45.77%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            +VE+GI VMGH+GLTPQ ++  GG+R QGK   +   ++ +A  L++ G F++VLE          T ++ IPTIGIG+G FC GQVLV+HDLLG+  +P  A   P+F K++A + +VI KA  E++ EV  G FP   HS
Sbjct:  123 LVESGIPVMGHIGLTPQFVNRFGGYRVQGKTEKNREYLLRSARELEKRGAFAIVLELVVEEVAKEITESVSIPTIGIGSGRFCDGQVLVWHDLLGL--NPDFA---PRFSKKYANLYEVILKALQEFRREVKEGLFPTEEHS 259          
The following BLAST results are available for this feature:
BLAST of CV884899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PANB_METS47.650e-2843.333-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_HYPBU7.650e-2845.003-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_CLOD69.991e-2843.243-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_THENN1.305e-2746.103-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_NOCFA1.305e-2745.773-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_LEPBJ1.305e-2746.433-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_DEHSB1.305e-2745.993-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_CENSY1.305e-2741.403-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_CAMJJ1.305e-2743.663-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_THESQ1.704e-2745.773-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884899 ID=CV884899; Name=CV884899; organism=Citrus sinensis; type=EST; length=823bp
TCACGAATTACAGCAGCAAGAGGAATTGTTGAAGCTGGAATTGCAGTTAT
GGGGCATGTGGGACTTACCCCTCAAGCCATTAGTGTTCTTGGGGGATTCA
GGCCTCAAGGGAAAAATGTTACTAGTGCTGTCAAGGTTGTGGAGACTGCT
CTGGCTTTGCAAGAAGTCGGATGTTTCTCAGTTGTTTTGGAATGTGTGCC
CCCGCCTGTGGCTGCTGCAGCTACATCTGCTCTTCAAATTCCTACCATTG
GCATTGGAGCTGGACCCTTCTGCAGTGGCCAGGTGCTAGTTTACCATGAT
CTTTTAGGGATGATGCAACACCCACATCATGCCAAGGTCACTCCGAAGTT
CTGCAAGCAGTTTGCACGTGTTGGAGATGTCATAAACAAAGCTCCATTGG
AGTACAAGGAAGAAGTAACAAATGGTTCATTCCCTGGTCCCAGTCACAGC
CCTTATAAAATGTCTAGTAGTGATTGTAATGGTTTCTTCAATGAGTTACA
GAAGCTGGGTTTCGACAAAGCAGCAGCGGTGGCTGCTGAAGCAGCTGAGA
AGATTGATACAGCTAAATAACCTGATGAAGGAAATTCAGCAAGGCAATGA
ATATGCTCAATCCAGCCAGAGAGCCACTTTCACTCGGCTCCTCTTTCGCT
GATTAAACAAAGTGTAGAAGCTACAAATAACAGTGGCGTTTTGGGCTGTT
TTGGTTGTCTTATGACATTAACTTATTTGATTAGCATGGTTGTAGTTTTT
GAACAAACTGAAATACACAGAATAAATAGATAAAGAAGACGCCGTTACTT
ATACAATGGCGATACTTTTACCT
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