CV884899

Overview
NameCV884899
Unique NameCV884899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length823
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_THEMA (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Thermotoga maritima GN=panB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.704e-27
Identity = 65/142 (45.77%), Postives = 92/142 (64.79%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            +VE+GI VMGH+GLTPQ ++  GG+R QGK   +   ++ +A  L++ G F++VLE          T ++ IPTIGIG+G FC GQVLV+HDLLG+  +P  A   P+F K++A + +VI KA  E++ EV  G FP   HS
Sbjct:  123 LVESGIPVMGHIGLTPQFVNRFGGYRVQGKTEKNREYLLRSARELEKRGAFAIVLELVVEEVAKEITESVSIPTIGIGSGRFCDGQVLVWHDLLGL--NPDFA---PRFSKKYANLYEVILKALQEFRREVKKGLFPTEEHS 259          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_CHLAD (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=panB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.704e-27
Identity = 66/147 (44.90%), Postives = 92/147 (62.59%), Query Frame = 1
Query:   10 TAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            T AR +V  GI VMGH+G TPQA++ +G  R QG+    A +++E ALA+QE G F++VLE          T  L+IPTIGIGAG  CSGQV V+HDLLG+     ++   P+  +++  +  VI +A  +Y  +V  G+FPGP HS
Sbjct:  122 TIAR-LVHLGIPVMGHIGFTPQAVNQIG-LRVQGRRANEARQLLEDALAVQEAGAFAIVLELVPAELAQAITERLRIPTIGIGAGAGCSGQVQVWHDLLGL-----YSDFVPRHARRYTDLATVIGEALTQYVHDVRTGTFPGPEHS 261          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_BORPD (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=panB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.704e-27
Identity = 60/137 (43.80%), Postives = 86/137 (62.77%), Query Frame = 1
Query:   37 GIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSH 447
            G+ V+ H+GL PQ ++ +GG++ QG     + +++  A ALQE G F++V+EC         T ALQIP IGIGA P C GQ+LV  D+LGM      A+V P+F KQ+A++GD I +A   Y ++V  G+FP P H
Sbjct:  136 GVPVVSHIGLMPQQVNTVGGYKAQGMQADGSERILRDAQALQEAGAFALVVECTAEAVGRRVTEALQIPVIGIGASPACDGQILVTEDMLGM----SGARV-PRFVKQYAQLGDEIGRAAQRYAQDVRAGAFPAPEH 267          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_THET8 (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=panB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.226e-27
Identity = 61/144 (42.36%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            +G+V AG+ V+GHVGLTPQ  S LGG++ QG+    A ++++ ALAL+E G + VVLE          T  L + T+GIGAGP    QVLV+HD++G+     +    P+F K++   G +I +A   Y +EV  G FPG  HS
Sbjct:  122 QGLVRAGVPVLGHVGLTPQTASQLGGYKLQGRRPEEAERILKGALALEEAGAYGVVLEMVPARLAKEVTERLSVHTVGIGAGPHTDAQVLVFHDVVGL-----YGDFKPRFVKRYLEAGRLIQEALSRYAQEVREGVFPGEEHS 260          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_GEOMG (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=panB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.226e-27
Identity = 64/144 (44.44%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            R IV+  I VM H+GLTPQ+I  +GG++ QGK    + ++++ A A++E G F+VVLE          T  L IPTIGIGAGP C GQVLV HD+LG+ +     K +PKF K++     +I  A   Y  EV  G FP   HS
Sbjct:  127 RAIVDMDIPVMAHIGLTPQSIHRMGGYKVQGKKEEQSQRLLDDAKAIEEAGAFAVVLEGIPLKLAEKITEELSIPTIGIGAGPHCDGQVLVIHDILGLCE-----KYSPKFVKRYGDANALITSAVSSYIAEVKKGEFPDEGHS 265          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB2_BRAJA (3-methyl-2-oxobutanoate hydroxymethyltransferase 2 OS=Bradyrhizobium japonicum GN=panB2 PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 2.226e-27
Identity = 61/145 (42.07%), Postives = 91/145 (62.76%), Query Frame = 1
Query:    4 RITAARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPG 438
            RI   R +V+  I VMGH+GLTPQ+++V+GGF+ QG+   +A+++++ A  LQE GCF++VLE          T +L IPTIGIGAG  CSGQVLV+HD+LG+ +        PKF + +     +  +A   +  ++  G+FPG
Sbjct:  127 RIEMVRALVDCDIPVMGHLGLTPQSVNVMGGFKVQGRTTDTALRLLDDAHRLQEAGCFALVLEGIPAELAARATESLTIPTIGIGAGADCSGQVLVFHDVLGLTEGHR-----PKFVRAYTNGFQLFQEALSRWAADIRKGAFPG 266          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_THENV (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=panB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.907e-27
Identity = 62/141 (43.97%), Postives = 84/141 (59.57%), Query Frame = 1
Query:   25 IVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSH 447
            +V+AGI VMGH+GLTPQ    +GGF+  GK      K++E A AL++ G FS+VLE          T A+ +PTI IG+GP C GQ+LV HD++G+ + P      P F K++A V   I +A  +Y EEV  G FP   H
Sbjct:  124 LVKAGIPVMGHIGLTPQRFLTIGGFKMVGKTEEQRRKILEDAKALRDAGVFSIVLEFVPASLAREVTQAVDVPTICIGSGPHCDGQILVLHDVVGLTERP------PSFAKKYADVAAAIREAVSKYAEEVRKGLFPAREH 258          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_EMENI (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Emericella nidulans GN=panB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.907e-27
Identity = 65/146 (44.52%), Postives = 89/146 (60.96%), Query Frame = 1
Query:   13 AARGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            A + I  AGI V+GH+GLTPQ  + LGGFR QGK+ T A+K+++ ALA+QE G F +V+E          T  L +PTIGIGAG  CSGQVLV  D+ G        +  PKF KQ+A V +   +   +Y+EEV + ++P   H+
Sbjct:  185 AIKRITTAGIPVVGHIGLTPQRQNALGGFRVQGKSTTDALKLLKDALAVQEAGAFMIVIEAVPPEIASIVTQKLSVPTIGIGAGNGCSGQVLVQIDMTGNFP---PGRFLPKFVKQYANVWNEALQGIQQYREEVKSRAYPAEQHT 327          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_DESPS (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Desulfotalea psychrophila GN=panB PE=3 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.907e-27
Identity = 61/144 (42.36%), Postives = 91/144 (63.19%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHS 450
            + IV+AGI VMGH+GLTPQ  +VLGG++ QG+++ +A K+   A  L+E G   +VLEC         T+++ +PT+GIGAG  C GQVLV +D+LG+ +     K TPKF K +A++  ++ +    Y  EV  G+FP   H+
Sbjct:  125 KAIVDAGIPVMGHLGLTPQTAAVLGGYKVQGRDMEAARKLFADAKRLEEAGVCGLVLECIPAGLAEVVTASIAVPTVGIGAGKGCDGQVLVINDMLGLFE-----KFTPKFVKHYAQLAPLVRQGVENYIGEVRAGAFPEAEHT 263          
BLAST of CV884899 vs. ExPASy Swiss-Prot
Match: PANB_BACSU (3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Bacillus subtilis GN=panB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.907e-27
Identity = 63/157 (40.13%), Postives = 93/157 (59.24%), Query Frame = 1
Query:   19 RGIVEAGIAVMGHVGLTPQAISVLGGFRPQGKNVTSAVKVVETALALQEVGCFSVVLECXXXXXXXXXTSALQIPTIGIGAGPFCSGQVLVYHDLLGMMQHPHHAKVTPKFCKQFARVGDVINKAPLEYKEEVTNGSFPGPSHSPYKMSSSDCNGFF 489
            R +   GI V+ H+GLTPQ++ VLGG++ QGK+  SA K++E ++  +E G   +VLEC            L IP IGIGAG    GQVLVYHD++G     H  + TPKF KQ+ R+ + I  A   Y ++V + +FP   HS ++M+ +  +G +
Sbjct:  124 RALTLGGIPVVSHLGLTPQSVGVLGGYKVQGKDEQSAKKLIEDSIKCEEAGAMMLVLECVPAELTAKIAETLSIPVIGIGAGVKADGQVLVYHDIIG-----HGVERTPKFVKQYTRIDETIETAISGYVQDVRHRAFPEQKHS-FQMNQTVLDGLY 274          
The following BLAST results are available for this feature:
BLAST of CV884899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PANB_THEMA1.704e-2745.773-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_CHLAD1.704e-2744.903-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_BORPD1.704e-2743.803-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_THET82.226e-2742.363-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_GEOMG2.226e-2744.443-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB2_BRAJA2.226e-2742.073-methyl-2-oxobutanoate hydroxymethyltransferase 2... [more]
PANB_THENV2.907e-2743.973-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_EMENI2.907e-2744.523-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_DESPS2.907e-2742.363-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]
PANB_BACSU2.907e-2740.133-methyl-2-oxobutanoate hydroxymethyltransferase O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_011C08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_011_T7_C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884899 ID=CV884899; Name=CV884899; organism=Citrus sinensis; type=EST; length=823bp
TCACGAATTACAGCAGCAAGAGGAATTGTTGAAGCTGGAATTGCAGTTAT
GGGGCATGTGGGACTTACCCCTCAAGCCATTAGTGTTCTTGGGGGATTCA
GGCCTCAAGGGAAAAATGTTACTAGTGCTGTCAAGGTTGTGGAGACTGCT
CTGGCTTTGCAAGAAGTCGGATGTTTCTCAGTTGTTTTGGAATGTGTGCC
CCCGCCTGTGGCTGCTGCAGCTACATCTGCTCTTCAAATTCCTACCATTG
GCATTGGAGCTGGACCCTTCTGCAGTGGCCAGGTGCTAGTTTACCATGAT
CTTTTAGGGATGATGCAACACCCACATCATGCCAAGGTCACTCCGAAGTT
CTGCAAGCAGTTTGCACGTGTTGGAGATGTCATAAACAAAGCTCCATTGG
AGTACAAGGAAGAAGTAACAAATGGTTCATTCCCTGGTCCCAGTCACAGC
CCTTATAAAATGTCTAGTAGTGATTGTAATGGTTTCTTCAATGAGTTACA
GAAGCTGGGTTTCGACAAAGCAGCAGCGGTGGCTGCTGAAGCAGCTGAGA
AGATTGATACAGCTAAATAACCTGATGAAGGAAATTCAGCAAGGCAATGA
ATATGCTCAATCCAGCCAGAGAGCCACTTTCACTCGGCTCCTCTTTCGCT
GATTAAACAAAGTGTAGAAGCTACAAATAACAGTGGCGTTTTGGGCTGTT
TTGGTTGTCTTATGACATTAACTTATTTGATTAGCATGGTTGTAGTTTTT
GAACAAACTGAAATACACAGAATAAATAGATAAAGAAGACGCCGTTACTT
ATACAATGGCGATACTTTTACCT
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