EY665332

Overview
NameEY665332
Unique NameEY665332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1087
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY665332 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 2.013e-80
Identity = 135/203 (66.50%), Postives = 158/203 (77.83%), Query Frame = 1
Query:    1 QNHGHVENDESWHPLSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRSPGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRRGLTTLDRDYGWFHNIHHDIGTHVIHHLFPQIPHYPYINHLKRQTSP-WKYYREPRNRERNPL 606
            QNHGHVENDESW PL E++Y+ L  +TR LR+ +P P+LAYP YL  RSPGK GSHF+P S LF PSERK + TST CW+ M   L+ LSFV GP+ +LK+YGVPY IFVMWLD VTYLHHHGH++KLPWYRGKEWSYLR GLTT+DRDYG F+NIHHDIGTHVIHHLFPQIPHY  ++  K       +YYREP+     P+
Sbjct:  142 QNHGHVENDESWVPLPERVYKKLPHSTRMLRYTVPLPMLAYPLYLCYRSPGKEGSHFNPYSSLFAPSERKLIATSTTCWSIMFVSLIALSFVFGPLAVLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYREPKTSGAIPI 344          
BLAST of EY665332 vs. ExPASy Swiss-Prot
Match: FAD12_CREAL (Delta(12) fatty acid dehydrogenase OS=Crepis alpina PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 7.277e-22
Identity = 67/187 (35.83%), Postives = 102/187 (54.55%), Query Frame = 1
Query:    4 NHGHVENDESWHPLSEK----IYRTLDSAT-RFLRFKIPFPLLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVM---GPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRRGLTTLDRDYGWFHNIHHDI-GTHVIHHLFPQIPHY 525
            N   ++NDE + P S+      Y+ L+    R L   I F L  +P YL++   GK      +HFDP S +F   ER  V+ S +    + A+L G+   +   G   +  +YG+P     ++ D++TYLHH      LP Y   EW++LR  L+T+DRD+G+ +++ HD+  THV+HHLF  IPHY
Sbjct:  140 NTNSLDNDEVYIPKSKAKVALYYKVLNHPPGRLLIMFITFTL-GFPLYLFTNISGKKYERFANHFDPMSPIFKERERFQVLLSDL---GLLAVLYGVKLAVAAKGAAWVTCIYGIPVLGVFIFFDIITYLHHT--HLSLPHYDSSEWNWLRGALSTIDRDFGFLNSVLHDVTHTHVMHHLFSYIPHY 320          
BLAST of EY665332 vs. ExPASy Swiss-Prot
Match: FAD6E_ARATH (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.737e-18
Identity = 61/184 (33.15%), Postives = 87/184 (47.28%), Query Frame = 1
Query:    4 NHGHVENDESWHPLSEKIYRTL-----DSATRFLRFKIPFPLLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRRGLTTLDRDYGWFHNIHHDI-GTHVIHHLFPQIPHY 525
            N G +E DE + P  +   +       +   R +   + F +L +P YL     G+       HF PN+ ++   ER  +  S     A+   L   +   G   ++ LYGVP  I   +L L+TYL H      LP Y   EW +LR  L T+DRDYG  + + H+I  THV HHLF  +PHY
Sbjct:  147 NTGSLERDEVFVPKQKSAIKWYGKYLNNPLGRIMMLTVQF-VLGWPLYLAFNVSGRPYDGFACHFFPNAPIYNDRERLQIYLSDAGILAVCFGLYRYAAAQGMASMICLYGVPLLIVNAFLVLITYLQHT--HPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHY 327          
BLAST of EY665332 vs. ExPASy Swiss-Prot
Match: FAD6E_BRAJU (Omega-6 fatty acid desaturase, endoplasmic reticulum OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 5.397e-17
Identity = 63/193 (32.64%), Postives = 88/193 (45.60%), Query Frame = 1
Query:    4 NHGHVENDESWHP------------LSEKIYRTLDSATRFLRFKIPFPLLAYPFYLWSRS------PGKTGSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRRGLTTLDRDYGWFHNIHHDI-GTHVIHHLFPQIPHY 525
            N G +E DE + P            L+  + RT+    +F         L +P Y W+ +      P     HF PN+ ++   ER  +  S     A+   L   +   G   ++ LYGVP  I   +L L+TYL H      LP Y   EW +LR  L T+DRDYG  + + H+I  THV HHLF  +PHY
Sbjct:  147 NTGSLERDEVFVPKKKSDIKWYGKYLNNPLGRTVMLTVQFT--------LGWPLY-WAFNVSGRPYPEGFACHFHPNAPIYNDRERLQIYVSDAGILAVCYGLYRYAAAQGVASMVCLYGVPLLIVNAFLVLITYLQHT--HPSLPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHY 328          
BLAST of EY665332 vs. ExPASy Swiss-Prot
Match: FAD12_MORAP (Delta(12) fatty acid desaturase OS=Mortierella alpina PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.202e-16
Identity = 57/163 (34.97%), Postives = 78/163 (47.85%), Query Frame = 1
Query:  112 LLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRRGLTTLDRDYGWF--HNIHHDIGTHVIHHLFPQIPHY---PYINHLKRQTSPWKYY 573
            L  +P YL   + G+      SHF   S +F P    D+I S +   A    L+  S  +  + + K Y VPY     WL L+T+L H   + KLP YR   W++ R  L T+DR +G F  H  H  + THV HHLF Q+P Y       HLK+    +  Y
Sbjct:  210 LFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIVPYLFVNFWLVLITFLQH--TDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVY 370          
BLAST of EY665332 vs. ExPASy Swiss-Prot
Match: FAD12_MORIS (Delta(12) fatty acid desaturase OS=Mortierella isabellina PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.570e-16
Identity = 56/163 (34.36%), Postives = 78/163 (47.85%), Query Frame = 1
Query:  112 LLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRRGLTTLDRDYGWF--HNIHHDIGTHVIHHLFPQIPHY---PYINHLKRQTSPWKYY 573
            L  +P YL   + G+      SHF   S +F P    D+I S +   A    L+  S  +  + + K Y +PY     WL L+T+L H   + KLP YR   W++ R  L T+DR +G F  H  H  + THV HHLF Q+P Y       HLK+    +  Y
Sbjct:  210 LFGWPAYLIMNASGQDYGRWTSHFHTYSPIFEPRNFFDIIISDLGVLAALGALIYASMQLSLLTVTKYYIIPYLFVNFWLVLITFLQH--TDPKLPHYREGAWNFQRGALCTVDRSFGKFLDHMFHGIVHTHVAHHLFSQMPFYHAEEATYHLKKLLGEYYVY 370          
BLAST of EY665332 vs. ExPASy Swiss-Prot
Match: FD6E2_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.569e-16
Identity = 58/184 (31.52%), Postives = 84/184 (45.65%), Query Frame = 1
Query:    4 NHGHVENDESWHPLSEKIYRTLDSAT-----RFLRFKIPFPLLAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRRGLTTLDRDYGWFHNIHHDI-GTHVIHHLFPQIPHY 525
            N G +E DE + P  +   +           R L   +   L  +P YL     G+       H+DP   ++   ER  +  S     A+   L  L+   G   ++ +YGVP  +   +L L+T+L H      LP Y   EW +LR  L T+DRDYG  + + H+I  THV HHLF  +PHY
Sbjct:  147 NTGSLERDEVFVPKQKSCIKWYSKYLNNPPGRVLTLAVTLTL-GWPLYLALNVSGRPYDRFACHYDPYGPIYSDRERLQIYISDAGVLAVVYGLFRLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHT--HPALPHYTSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHY 327          
BLAST of EY665332 vs. ExPASy Swiss-Prot
Match: FD6E1_SOYBN (Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1 OS=Glycine max GN=FAD2-1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.018e-15
Identity = 50/142 (35.21%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  115 LAYPFYLWSRSPGKT----GSHFDPNSDLFVPSERKDVITSTVCWTAMAALLVGLSFVMGPMQLLKLYGVPYWIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRRGLTTLDRDYGWFHNI-HHDIGTHVIHHLFPQIPHY 525
            + +P YL     G+      SH+ P + ++   ER  +  S V   ++   L  ++ + G + LL +YGVP  I   +L  +TYL H      LP Y   EW +L+  L T+DRDYG  + + HH   THV HHLF  +PHY
Sbjct:  192 IGWPMYLAFNVSGRPYDSFASHYHPYAPIYSNRERLLIYVSDVALFSVTYSLYRVATLKGLVWLLCVYGVPLLIVNGFLVTITYLQHTHFA--LPHYDSSEWDWLKGALATMDRDYGILNKVFHHITDTHVAHHLFSTMPHY 331          
The following BLAST results are available for this feature:
BLAST of EY665332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FAD3E_ARATH2.013e-8066.50Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_CREAL7.277e-2235.83Delta(12) fatty acid dehydrogenase OS=Crepis alpin... [more]
FAD6E_ARATH3.737e-1833.15Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD6E_BRAJU5.397e-1732.64Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FAD12_MORAP1.202e-1634.97Delta(12) fatty acid desaturase OS=Mortierella alp... [more]
FAD12_MORIS1.570e-1634.36Delta(12) fatty acid desaturase OS=Mortierella isa... [more]
FD6E2_SOYBN4.569e-1631.52Omega-6 fatty acid desaturase, endoplasmic reticul... [more]
FD6E1_SOYBN1.018e-1535.21Omega-6 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665332 ID=EY665332; Name=EY665332; organism=Citrus sinensis; type=EST; length=1087bp
CAAAACCATGGGCATGTTGAGAATGATGAATCCTGGCACCCGTTGTCTGA
GAAAATTTACAGGACTTTGGATAGTGCAACAAGATTTTTGAGATTCAAAA
TTCCTTTTCCCTTGCTTGCATATCCCTTTTATCTTTGGAGTAGGAGTCCG
GGGAAGACTGGTTCTCACTTTGACCCTAACAGTGACCTGTTTGTCCCAAG
TGAGAGGAAGGATGTGATCACTTCAACAGTATGCTGGACGGCCATGGCTG
CTTTGCTAGTGGGTTTATCATTTGTAATGGGTCCTATGCAGTTGCTTAAA
CTCTATGGCGTTCCATATTGGATTTTTGTCATGTGGCTGGACCTTGTGAC
TTACTTGCATCACCATGGGCATGAAGACAAACTTCCGTGGTATCGTGGAA
AGGAATGGAGTTACTTAAGGAGAGGGCTCACAACACTTGATCGTGACTAT
GGATGGTTTCATAACATCCACCACGATATTGGAACCCACGTCATACATCA
CCTCTTCCCTCAAATCCCGCATTACCCCTATATAAACCACCTGAAGCGGC
AGACCAGTCCTTGGAAATATTACCGGGAGCCAAGAAATCGGGAACGGAAC
CCTTTAACCTTTTGGGAAATTAATTTAAAACAGGGTTAAAAACCCTATGG
TATTGAAATGGGCAAGTTGTTTATACCAAACCAACCCAGCTTTACGGCTC
TTCCAATCCGGGAAAGATGGGAATTTTTTTACTTTAAACCGGGTTTTAAA
ACTTTTACAACCCATACCAGTCTTATATCCAAAGTTTTAAAACCACATGT
GGGGGGAACTCCTTTAACAAAAAGTGGCCCAAAAAAAAAAATGCCTCGCT
CTTAATATAGGGAAAAAGAGATTTCCACTTGGGAAATTTGAAGGAAAATT
TATTTCCCTCAAAAAATTTTCTCCACATTTTCTGTGTTTTAAAAACTTCT
TTGGAAAAATAGAATTTTTATTTTTCAAACAATAAAAAAAAAAGGGGCCC
AGAAAAAGATAGCCGTGGGAAGATTTCTATTTATATTTTTGGGCCTAAAT
GGTGGGAAACACGCGTTATCGACCCCTTCACGGGAAA
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