EY665328

Overview
NameEY665328
Unique NameEY665328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1277
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY665328 vs. ExPASy Swiss-Prot
Match: AQP_CICVR (Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.354e-11
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 2 
Query:   23 APLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILRA 229
            AP+ +G A+   HLA I  TG+ +NPARSFG AV  N +  W + W++W GP +G  VA   ++ + RA
Sbjct:  177 APVAVGLAITCCHLAAIKYTGSSMNPARSFGPAV--NGDDNWANHWVYWAGPIVGGVVAGITYRALFRA 243
[Close]
BLAST of EY665328 vs. ExPASy Swiss-Prot
Match: AQP4_NOTAL (Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.354e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 2 
Query:   29 LPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 220
            L IGF+V + HL  I  TG  +NPARSFG AVI      W++ WI+WVGP IGA +A   ++Y+
Sbjct:  194 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGN---WENHWIYWVGPIIGAVLAGALYEYV 254
The following BLAST results are available for this feature:
BLAST of EY665328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
AQP_CICVR9.354e-1143.48Aquaporin AQPcic OS=Cicadella viridis GN=AQP PE=1 ... [more]
AQP4_NOTAL9.354e-1150.00Aquaporin-4 OS=Notomys alexis GN=AQP4 PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-101-086-F06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY665328 ID=EY665328; Name=EY665328; organism=Citrus sinensis; type=EST; length=1277bp
GACTACCCATGTTCCGGTCTTGGCACCACTCCCCATTGGGTTTGCTGTGT
TCATGGTTCACTTGGCCACCATCCCCATCACCGGAACCGGCATCAACCCA
GCTAGGAGTTTTGGAGCTGCTGTGATCTACAACAAGGAGAAAGCCTGGGA
TGACCAATGGATCTTCTGGGTTGGACCATTCATTGGAGCTTTCGTTGCTG
CATTCTACCACCAATACATTCTCAGGGCAGCAGCCATTAAGGCTCTTGGA
TCCTTCAGGAGCAATGCTTAAGCTTTAAATATGATGTCTGGTGCTTCCAA
GGTGAAAAATTTACAGCATGATCAGGAGTGCAAGTCTGTTACGAAGGCCC
TTTAAGAAATCTCTTTTCAAGCTCTTTAGAGGGTCATTGAATTTGAGCTG
AATTAGAAGGCTATTGAATTGTAGATATTTGAACATTATGCTTTTATGCC
TATGCTTTATCTATGTGTAAAGGTGGATTTTGGTATCCAATTTTAATTTT
TTCTTTGGGTGTGTTTAAAATGGGGGGGGGTTTTTTATAATCCTATTTCT
CAAATTTTTCTTAAAAATAAAATAAGGGGGGCCGCCAGGAAGAACCAAGT
TAATTACCCGTCATGGAACGCTATATTCTTCTAAGGGCCCCTAATTCATA
TCATGGGCCGCTTTTAAACTCAAGGACGGGGAAACACGCGGTCACCAACT
TACGCGCTTGACCCCACCCCCTTTCACCCTCGGGGAATAAAAAAAACCCC
CCTAACCCCTCCCAAGTGATGCCCCGGAGTGGAAGGAGATCGCCAGAGCC
ACTAACCCGGGGGGGGAGGGTAAATACAATCACATACTCAACCCACGGCG
CTTCTTCTGCATCACCTTTCCAATCAGCGACGATTCATAGGCAAANTATG
ATATGATGATAATACATTGACACTAACGACATATTTTAGTATTTTATTAC
CTAACATGCTTATTGACTGAATAACATGCCTAGTTTCCAATCCACCAATA
ACGACGTAACTGTTCCCCTAGAATTTCGTTCTGTCGTGAATGATATACAT
AGGCATGTTGACATTCTATAGATTGCGTTATCTTTTAAATTTAATACTAG
AATGATACAAGTTATATAGCGCAGATATATTCATCAATCTACTATCCAGC
AGCACACAGCAACATAGCACACCCGAGCACAATACAAGTGATGTACGACA
ATACAGCTCCCACCAGCACAATCAATTGCTACGTAACACAAAAAATTTAA
CACTTTAAATTACATTACTTTACTCAT
back to top