CV884827

Overview
NameCV884827
Unique NameCV884827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.452e-24
Identity = 60/143 (41.96%), Postives = 87/143 (60.84%), Query Frame = 3
Query:  189 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 614
            +T+  +RL ++    M +    GVSA P  +++ TW   I G   T +E  +++L + F   YP KPPQVKF +  FHPNV   G +CLDILQ++WS  YD   +L SIQSLL +PN  SP N  A+ L  +N+++Y K V++
Sbjct:    2 STAARRRLMRDFKR-MQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRE 143          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.452e-24
Identity = 57/139 (41.01%), Postives = 81/139 (58.27%), Query Frame = 3
Query:  204 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALLNNKEDYRKMVQKQY 620
            +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +     D    + +++
Sbjct:    4 KRIHKELNDLARDP-PAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREW 141          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.203e-24
Identity = 60/143 (41.96%), Postives = 85/143 (59.44%), Query Frame = 3
Query:  189 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 614
            +T+  +RL ++   L  S   +G+S  P  ++I  W   I G   T +E  S++L+L F   YP KPP V+F +  FHPN+   G +CLDILQ++WS  YD   IL S+QSLL +PNP SP N  AA L   N ++Y + V+K
Sbjct:    2 STAAKRRLIRDFKRLT-SDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKK 143          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.203e-24
Identity = 60/151 (39.74%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  165 VSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 614
            +SS      ++  +R+QKEL  + +       SA P+G++I+ W  TI G  G++YEG  + L + F  DYPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  PL  S A   + N+ ++ +M ++
Sbjct:   45 ISSKTAAKLSTSAKRIQKELAEITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 194          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.203e-24
Identity = 60/151 (39.74%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  165 VSSPNTVDTTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL-NSYAAALLNNKEDYRKMVQK 614
            +SS      ++  +R+QKEL  + +       SA P+G++I+ W  TI G  G++YEG  + L + F  DYPFKPP+V F T  +H N++  G ICLDIL+D WS A     +LLSI SLL + NP  PL  S A   + N+ ++ +M ++
Sbjct:   45 ISSKTAAKLSTSAKRIQKELAEITLDPPP-NCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 194          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.183e-24
Identity = 58/122 (47.54%), Postives = 77/122 (63.11%), Query Frame = 3
Query:  195 SVTQRLQKELMSLMMSGGD--LGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPL 554
            S ++R+ KEL  L   G D     SA P G+ ++ W  +I G   + Y G  + LS+HFP DYPFKPP+V F T  +HPN++  GNICLDIL+D+WS A     +LLSI SLL + NP+ PL
Sbjct:    2 SSSKRIAKELSDL---GRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPL 120          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.183e-24
Identity = 60/143 (41.96%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  189 TTSVTQRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 614
            +T+  +RL ++    M +    GVSA P  +++ TW   I G   T +E  +++L + F   YP KPPQVKF +  FHPNV   G +CLDILQ++WS  YD   +L SIQSLL +PN  SP N  A+ L  +N+ +Y K V++
Sbjct:    2 STAARRRLMRDFKR-MQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRE 143          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.183e-24
Identity = 58/138 (42.03%), Postives = 84/138 (60.87%), Query Frame = 3
Query:  204 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 614
            +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct:    4 KRIHKELNDLARDP-PAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2D2_RAT (Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.183e-24
Identity = 58/138 (42.03%), Postives = 84/138 (60.87%), Query Frame = 3
Query:  204 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 614
            +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct:    4 KRIHKELNDLARDP-PAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140          
BLAST of CV884827 vs. ExPASy Swiss-Prot
Match: UB2D2_MOUSE (Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.183e-24
Identity = 58/138 (42.03%), Postives = 84/138 (60.87%), Query Frame = 3
Query:  204 QRLQKELMSLMMSGGDLGVSAFPEGESIFTWIGTIEGGKGTMYEGLSYKLSLHFPLDYPFKPPQVKFETMCFHPNVDQYGNICLDILQDKWSSAYDCRTILLSIQSLLGEPNPESPLNSYAAALL-NNKEDYRKMVQK 614
            +R+ KEL  L         SA P G+ +F W  TI G   + Y+G  + L++HFP DYPFKPP+V F T  +HPN++  G+ICLDIL+ +WS A     +LLSI SLL +PNP+ PL    A +   ++E Y ++ ++
Sbjct:    4 KRIHKELNDLARDP-PAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIARE 140          
The following BLAST results are available for this feature:
BLAST of CV884827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
UBC2_NECHA2.452e-2441.96Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UB2D2_PIG2.452e-2441.01Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBC2_CRYNE3.203e-2441.96Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UB2E2_MOUSE3.203e-2439.74Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN3.203e-2439.74Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UBC5_YEAST4.183e-2447.54Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC2_TRIHA4.183e-2441.96Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UB2D2_XENLA4.183e-2442.03Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]
UB2D2_RAT4.183e-2442.03Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norve... [more]
UB2D2_MOUSE4.183e-2442.03Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010H02_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884827 ID=CV884827; Name=CV884827; organism=Citrus sinensis; type=EST; length=862bp
CATAAACGCAATCAAGAATCATCTCATCGTCATCGTTAATCTTGATTATC
GTCATTGATCATCGGCCGTTGATCAGTGATTCTTCTTTGCTAATCATGGA
GGTGCGGCCAAATCCGACGGTTGAAAATTTACGTGCAACTGCCGCTGCTT
CGTCGAAGCAGCCTGTCTCTTCTCCTAACACCGTCGATACAACATCCGTT
ACTCAAAGGCTTCAGAAGGAATTGATGTCTCTTATGATGAGTGGAGGTGA
TCTTGGGGTCTCGGCCTTTCCTGAAGGCGAGAGCATTTTCACTTGGATTG
GCACAATTGAGGGTGGAAAGGGAACTATGTATGAGGGTTTATCATACAAA
CTTTCTTTGCATTTTCCTCTGGATTATCCTTTCAAGCCACCCCAAGTCAA
GTTTGAAACTATGTGCTTCCATCCAAATGTTGATCAGTATGGCAACATAT
GCCTAGACATCCTTCAGGACAAGTGGTCTTCAGCTTATGATTGCAGAACG
ATTCTTTTGTCCATTCAAAGTTTATTGGGAGAGCCTAATCCAGAGAGCCC
TCTCAACAGCTATGCTGCAGCTCTGTTGAACAATAAGGAAGATTACAGAA
AAATGGTCCAGAAACAGTACTTTGCTGGAGAATTTGAGAGCTAATTTGAA
CAGCAAAACAGATACAAAATCGGATGTTAGGCTTCCACATTATTTCTCTG
TAAAGCTCAAGGGGAAGGGCTTGTTTCAGTTTGGAACTTGTTTCAATGAA
AACTGATCTACATAAGTCTCATCATTGTCAGTACAGTTATTTACATTATA
CCCAAAGGAAGGTTACTCAGGCTCTTGATAATTTCTCATGTAATAGCAAA
ATAAAGTTTACA
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