CV884793

Overview
NameCV884793
Unique NameCV884793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884793 vs. ExPASy Swiss-Prot
Match: PGM5_HUMAN (Phosphoglucomutase-like protein 5 OS=Homo sapiens GN=PGM5 PE=1 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.044e-52
Identity = 112/236 (47.46%), Postives = 156/236 (66.10%), Query Frame = 2
Query:   68 TAPIDGQKP-GTSGLRKKVKVFT-QPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFG--GPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSP-KFTFCYDALHGVCGAYAKRI 760
            TAP + Q+P G  GLR+   +F  Q NYL NF+QS  +++     +G T+VV  DGRY+S+ AI+I+ +MAAANG+ R+ IGQNG+LSTPAVS +IR+       KA G  ILTASH PGGP  +FG+K+N+ NGGPAP+ ++DKIY+ +KTI EY+I  DL  +D+S  G   F        F VE+ D    Y+ L+++IFDF AI+ LL+ P +     DA+HGV G Y +++
Sbjct:   13 TAPYEDQRPAGGGGLRRPTGLFEGQRNYLPNFIQSVLSSIDLRDRQGCTMVVGSDGRYFSRTAIEIVVQMAAANGIGRLIIGQNGILSTPAVSCIIRK------IKAAGGIILTASHCPGGPGGEFGVKFNVANGGPAPDVVSDKIYQISKTIEEYAICPDL-RIDLSRLGRQEFDLENKFKPFRVEIVDPVDIYLNLLRTIFDFHAIKGLLTGPSQLKIRIDAMHGVMGPYVRKV 241          
BLAST of CV884793 vs. ExPASy Swiss-Prot
Match: PGM5_MOUSE (Phosphoglucomutase-like protein 5 OS=Mus musculus GN=Pgm5 PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.325e-52
Identity = 111/236 (47.03%), Postives = 155/236 (65.68%), Query Frame = 2
Query:   68 TAPIDGQKP-GTSGLRKKVKVFT-QPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFG--GPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSP-KFTFCYDALHGVCGAYAKRI 760
            TAP + Q+P G  GLR+   +F  Q NYL NF+QS  +++     +G T+VV  DGRY+S+ A +I+ +MAAANG+ R+ IGQNG+LSTPAVS +IR+       KA G  ILTASH PGGP  +FG+K+N+ NGGPAP+ ++DKIY+ +KTI EY+I  DL  +D+S  G   F        F VE+ D    Y+ L+++IFDF AI+ LL+ P +     DA+HGV G Y +++
Sbjct:   13 TAPYEDQRPTGGGGLRRPTGLFEGQRNYLPNFIQSVLSSIDLRDRQGCTMVVGSDGRYFSRTATEIVVQMAAANGIGRLIIGQNGILSTPAVSCIIRK------IKAAGGIILTASHCPGGPGGEFGVKFNVANGGPAPDVVSDKIYQISKTIEEYAICPDL-RIDLSRLGRQEFDLENKFKPFRVEIVDPVDIYLNLLRNIFDFNAIKSLLTGPSQLKIRVDAMHGVMGPYVRKV 241          
BLAST of CV884793 vs. ExPASy Swiss-Prot
Match: PGM1_YEAST (Phosphoglucomutase-1 OS=Saccharomyces cerevisiae GN=PGM1 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.332e-50
Identity = 109/239 (45.61%), Postives = 148/239 (61.92%), Query Frame = 2
Query:   68 TAPIDGQKPGTSGLRKKVKVFT-QPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGA-FILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPK----FTFCYDALHGVCGAYAKRIFV 766
            T     QKPGTSGLRKK KVF  +P+Y  NF+Q+T  ++      G TLVV GDGR+Y+   +  I  + AANGVR++ IGQ GLLSTPA S +IR    +   K TG   ILTASHNPGGP  D GIKYN+ NGGPAPE +T+ I+E +K +  Y I ++ P ++++  G     GP     V++ D A  YV+ +K IFDF+ I+  L+  +    +   +D+L+G+ G Y K IFV
Sbjct:   10 TVAYKDQKPGTSGLRKKTKVFMDEPHYTENFIQATMQSIPNGS-EGTTLVVGGDGRFYNDVIMNKIAAVGAANGVRKLVIGQGGLLSTPAASHIIR----TYEEKCTGGGIILTASHNPGGPENDLGIKYNLPNGGPAPESVTNAIWEASKKLTHYKIIKNFPKLNLNKLGKNQKYGP---LLVDIIDPAKAYVQFLKEIFDFDLIKSFLAKQRKDKGWKLLFDSLNGITGPYGKAIFV 240          
BLAST of CV884793 vs. ExPASy Swiss-Prot
Match: PGM52_HUMAN (Putative PGM5-like protein 2 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.511e-43
Identity = 92/187 (49.20%), Postives = 127/187 (67.91%), Query Frame = 2
Query:  209 LVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNEDFGIKYNMDNGGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFG--GPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSP-KFTFCYDALHGVCGAYAKRI 760
            +VV  DGRY+S+ AI+I+ +MAAANG+ R+ IGQNG+LSTPAVS +IR+       KA G  ILTASH PGGP  +FG+K+N+ NGGPAP+ ++DKIY+ +KTI EY+I  DL  +D+S  G   F        F VE+ D    Y+ L+++IFDF AI+ LL+ P +     DA+HGV G Y +++
Sbjct:    1 MVVGSDGRYFSRTAIEIVVQMAAANGIGRLIIGQNGILSTPAVSCIIRK------IKAAGGIILTASHCPGGPGGEFGVKFNVANGGPAPDVVSDKIYQISKTIEEYAICPDL-QIDLSRLGRQEFDLENKFKPFRVEIVDPVDIYLNLLRTIFDFHAIKSLLTGPSQLKIRVDAMHGVMGPYVRKV 180          
BLAST of CV884793 vs. ExPASy Swiss-Prot
Match: PGM_ENTHI (Phosphoglucomutase OS=Entamoeba histolytica GN=pgm PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.013e-39
Identity = 96/239 (40.17%), Postives = 133/239 (55.65%), Query Frame = 2
Query:   53 VTRKETAPIDGQKPGTSGLRKKV-KVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNE-DFGIKYNMDNGGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVCGAYAKRIF 763
            + R  T+PI GQ  GTSGLRK+  +V   PNYL NFV + FNA S  +  G  +++ GDGRY +  A+ II ++A + G   + +G++G +STPA SA I  R      KA   FI+TASHNP G    DFG+K NM NGGPAP  +T KI E+ + I E  IAE    ++I + G         +  V V D   DY+  +   FDFE +++ +S        D  + V G Y K++F
Sbjct:    5 IKRYPTSPISGQTLGTSGLRKRASEVENTPNYLENFVNAMFNAASNLQKPGK-IIIGGDGRYLNLKALDIIIRVALSRGFTDIVVGKSGFMSTPAESATIIRR------KAEAGFIMTASHNPAGKEHGDFGLKLNMSNGGPAPIEVTSKIEESARNIKEIVIAELNKPLNIDSVGDIEIECEGKKAVVHVIDPLEDYIAYLHECFDFENLKQFVSKYHLKVQVDGFNAVTGIYNKKVF 236          
BLAST of CV884793 vs. ExPASy Swiss-Prot
Match: PGM_ENTDI (Phosphoglucomutase OS=Entamoeba dispar GN=pgm PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.323e-39
Identity = 97/239 (40.59%), Postives = 131/239 (54.81%), Query Frame = 2
Query:   53 VTRKETAPIDGQKPGTSGLRKKV-KVFTQPNYLHNFVQSTFNALSAEKVRGATLVVSGDGRYYSKDAIQIITKMAAANGVRRVWIGQNGLLSTPAVSAVIRERVGSDGSKATGAFILTASHNPGGPNE-DFGIKYNMDNGGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVCGAYAKRIF 763
            V R  T PI GQ  GTSGLRK+  +V   PNYL NFV + FNA S  +  G  +++ GDGRY +  A+ II ++A + G   + +G++G +STPA SA I  R      KA   FI+TASHNP G +  DFG+K NM NGGPAP  +T KI E+ + I E  IAE    + I   G         +  V V D   DY+  +   FDFE +++ +S        D  + V G Y K++F
Sbjct:    5 VKRYPTTPISGQTMGTSGLRKRASEVENTPNYLENFVNAMFNAASNLQKPGK-IIIGGDGRYLNLKALDIIIRVALSRGFTDIVVGKSGFMSTPAESATIIRR------KAEAGFIMTASHNPAGKDHGDFGLKLNMSNGGPAPLEVTSKIEESARNIKEIVIAELNKPLTIDTIGDIEIECEGKKAIVHVIDPLEDYIAYLHECFDFEKLKQFVSKYHLKVQVDGFNAVTGIYNKKVF 236          
The following BLAST results are available for this feature:
BLAST of CV884793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PGM5_HUMAN1.044e-5247.46Phosphoglucomutase-like protein 5 OS=Homo sapiens ... [more]
PGM5_MOUSE2.325e-5247.03Phosphoglucomutase-like protein 5 OS=Mus musculus ... [more]
PGM1_YEAST6.332e-5045.61Phosphoglucomutase-1 OS=Saccharomyces cerevisiae G... [more]
PGM52_HUMAN1.511e-4349.20Putative PGM5-like protein 2 OS=Homo sapiens PE=5 ... [more]
PGM_ENTHI1.013e-3940.17Phosphoglucomutase OS=Entamoeba histolytica GN=pgm... [more]
PGM_ENTDI1.323e-3940.59Phosphoglucomutase OS=Entamoeba dispar GN=pgm PE=2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010F07_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T3_F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884793 ID=CV884793; Name=CV884793; organism=Citrus sinensis; type=EST; length=767bp
AGACAATCCAATTTCCGAAATCAATCGAATTCACGAAATGGTGATGTTCA
ACGTTACGCGAAAGGAAACCGCGCCTATCGACGGCCAGAAGCCTGGAACT
TCTGGTCTCCGTAAGAAGGTGAAAGTGTTTACGCAACCAAATTACCTTCA
CAATTTTGTTCAGTCTACTTTCAATGCCCTGTCGGCAGAAAAAGTTAGAG
GTGCTACACTTGTTGTTTCTGGTGATGGCCGGTACTACTCCAAGGATGCC
ATTCAGATTATAACTAAAATGGCAGCTGCAAATGGAGTACGACGTGTATG
GATTGGTCAAAACGGATTGCTTTCAACTCCTGCTGTATCAGCAGTAATTC
GCGAAAGGGTTGGGTCTGATGGATCCAAGGCAACGGGGGCTTTTATATTG
ACTGCAAGCCACAATCCAGGTGGTCCTAATGAGGATTTTGGTATTAAATA
CAACATGGATAATGGAGGACCTGCTCCGGAGGGAATCACCGATAAGATCT
ATGAGAACACAAAAACAATAAATGAGTACTCAATTGCAGAAGATCTACCA
GATGTGGATATCTCTGCTGCAGGTGTAACCAGCTTTGGGGGGCCTGAGGG
ACAATTTGATGTTGAAGTTTTTGATTCAGCTAGTGACTATGTGAAATTGA
TGAAGTCAATTTTTGACTTCGAGGCGATCCGCAAGCTACTTTCATCTCCA
AAATTCACATTCTGCTATGATGCACTACATGGAGTTTGCGGTGCATATGC
CAAACGCATATTTGTAG
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