CV884735

Overview
NameCV884735
Unique NameCV884735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884735 vs. ExPASy Swiss-Prot
Match: RS27A_YEAST (40S ribosomal protein S27-A OS=Saccharomyces cerevisiae GN=RPS27A PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.846e-21
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = -2
Query:  153 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 383
            DLL+P A         K LVQ P S+F+DVKC GC NITTVFSH+QT V C +C ++LC PTGG+A+L+EG SFRRK
Sbjct:    6 DLLHPTAASEARKHKLKTLVQGPRSYFLDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGKAKLSEGTSFRRK 82          
BLAST of CV884735 vs. ExPASy Swiss-Prot
Match: RS27_DICDI (40S ribosomal protein S27 OS=Dictyostelium discoideum GN=rps27 PE=3 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 5.022e-21
Identity = 46/79 (58.23%), Postives = 55/79 (69.62%), Query Frame = -2
Query:  147 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 383
            DLL P           KRLVQ+PNSFFMD+ C GC  ITTVFSH+Q VV+C +C +V+ QPTGGRAR+T GC  R+K D
Sbjct:    7 DLLFPSIESEKRKHKLKRLVQAPNSFFMDINCHGCRTITTVFSHAQNVVICSSCSTVIAQPTGGRARITAGCRLRQKSD 85          
BLAST of CV884735 vs. ExPASy Swiss-Prot
Match: RS27_ENTHI (40S ribosomal protein S27 OS=Entamoeba histolytica GN=RPS27 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.044e-14
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = -2
Query:  153 DIDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 389
            ++DLLNP A         KRLV +PNS+F+++KC  C   TT FSH+   ++C  C   L QPTGG+ +LT+ C FR K
Sbjct:    5 EVDLLNPTAASEAKAHKMKRLVPTPNSYFLEIKCPKCGATTTTFSHAHRQILCQKCGQPLGQPTGGKLKLTQQCKFRIK 83          
The following BLAST results are available for this feature:
BLAST of CV884735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS27A_YEAST3.846e-2159.7440S ribosomal protein S27-A OS=Saccharomyces cerev... [more]
RS27_DICDI5.022e-2158.2340S ribosomal protein S27 OS=Dictyostelium discoid... [more]
RS27_ENTHI2.044e-1445.5740S ribosomal protein S27 OS=Entamoeba histolytica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_010C05_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_010_T7_C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884735 ID=CV884735; Name=CV884735; organism=Citrus sinensis; type=EST; length=474bp
TATTTTCTTCCAACATAAGATCATCCACTACATCGAGTAAATTAAATTTG
AAACAAAAGGTTAAAACACTGTCTAACCTTAAAACTTCTACCAAAATTAA
TACATCATAACCAAAATGAAAAGATCTATCATTTAGGCAACACTTAGTCA
CCCTTTCTTCTGAACGAGCATCCCTCAGTGAGTCTGGCACGACCACCAGT
GGGCTGGCACAGAACGGATTGGCAGTTGCCACAAACCACAACAGTTTGAG
AGTGGCTGAAAACAGTTGTTATGTTGAAACAACCCTGACATTTCACATCC
ATGAAAAAGGAATTGGGGGATTGAACAAGCCGCTTAAGCTTGTGCTTCTT
CTTCTCAAGCTCAGCAGGAGGATTCAACAAATCAATATCGTTTTGGAGAA
CCATGCTTGCTAATTGCTATTGCCAGACGAGATTCAGGAGGAAACCCTAG
AAATTCCTAGCAGAGAGTAACCCT
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