CV884659

Overview
NameCV884659
Unique NameCV884659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884659_ssr5 microsatellite CV884659_ssr5:5..14. BLAST: Citrus ESTs to Prunus persica proteins V1
CV884659_ssr787 microsatellite CV884659_ssr787:787..806. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS9_ENCCU (40S ribosomal protein S9 OS=Encephalitozoon cuniculi GN=RPS9 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.980e-28
Identity = 74/165 (44.85%), Postives = 103/165 (62.42%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFL--------EESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG 542
            K    PR P+EKERL  E +LVG YGL+ K ELW ++   ++ +  AR LLT    NP  I   G +LLRR+ +YG L        +E  N L+ VL LT+ ++LERRLQ  VF +G+AKS+HHAR+LI  R I +  Q+V++P F+VR D +  IE++  S +G
Sbjct:    8 KRASTPRDPFEKERLIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLT--STNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_STAMF (30S ribosomal protein S4P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.980e-28
Identity = 70/157 (44.59%), Postives = 103/157 (65.61%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEG--EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 539
            K ++ PR P+ KE L  EL+L+G YGLR KRELWR Q  + + R+ AR LL      P+ I E   +ALL R++R G L E+ + L+ VL LTVE+ LERRLQT+V+K G+A++I+HAR LI   HI +  + +  P ++V  + +  ++++ TSPF
Sbjct:    9 KKWEGPRHPWRKEVLVQELKLLGTYGLRNKRELWRAQTIVRKFRHQARSLLAA----PQEIREQAEKALLNRLYRLGLLHENAS-LEDVLGLTVEDLLERRLQTIVYKKGLARTIYHARQLIIHGHIAIAGRRITSPGYIVSREEEDLVDYAPTSPF 160          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_METKA (30S ribosomal protein S4P OS=Methanopyrus kandleri GN=rps4p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.640e-28
Identity = 65/156 (41.67%), Postives = 104/156 (66.67%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNK--LDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 536
            K ++ PR P+E ERL+ E +L+ +YGLR K+ELWR Q  L R R  A++L+   +   +R  E EAL R+++  G L++   +  LD +L LTVE+ LERRLQT+V++ G+AK+   AR L+  RHI +G ++V +PS++V  + ++ +++S  SP
Sbjct:    9 KKYETPRHPWEAERLEYERKLMRKYGLRRKKELWRHQTQLKRWRERAKELMARTDPEAQR--EREALFRKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQLVVHRHIAIGDRIVTVPSYLVSREEEEEVDYSPYSP 162          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_HYPBU (30S ribosomal protein S4P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 7.341e-27
Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 551
            K +  P+ P+ KERL  EL LVG YGLR KRELW+++      R+ AR LL L  +   +  E +ALL R++  G L E+   LD VL LT E+FLERRLQT+V+K G+A++I+ AR LI   HI +  + +  P ++V+ D +  ++++ TSP+   R
Sbjct:    9 KKWMGPKHPWIKERLVRELELVGRYGLRNKRELWKLETLARYFRHRARSLLALPPEVREK--EEKALLARLNELGVLPENAT-LDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPYAKRR 164          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_METJA (30S ribosomal protein S4P OS=Methanocaldococcus jannaschii GN=rps4p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.635e-26
Identity = 67/169 (39.64%), Postives = 100/169 (59.17%), Query Frame = 3
Query:   63 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRVK 566
            R + KT++ P  P+ KER++ E  L  +YGLR KRE+W+ +  L + R  AR L++  ++  +   E   L   + +YG L+     LD VL+LTVE+ LERRLQTLVF+ G+A++   AR LI   HI V  ++V  PS++V V+ +  I ++  SPF     P R K
Sbjct:    6 RRFKKTYETPNHPWIKERIEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTEQGAKEAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_THEAC (30S ribosomal protein S4P OS=Thermoplasma acidophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.758e-26
Identity = 66/157 (42.04%), Postives = 99/157 (63.06%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDL---LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 536
            K +  PR P+EKER+D E ++V +YGL+ K+E+WR +  LS IR+ ARDL   L  ++ N ++  + E +++R++RY  L E+   LD VL+LTVEN L+RRLQT+VF+  +A S+  AR LI   HI V  + V +P  +V    +  I +   SP
Sbjct:    9 KKYSTPRHPWEKERIDEENKIVVKYGLKNKKEIWRSEALLSSIRSQARDLRARLRTNDVNAQK--QLERMIKRLNRYKLLSENAT-LDDVLSLTVENILDRRLQTIVFRKNLAISVRQARQLITHGHISVAGRRVTVPGMLVEAKDEDTIAYEENSP 162          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_PICTO (30S ribosomal protein S4P OS=Picrophilus torridus GN=rps4p PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.060e-25
Identity = 66/156 (42.31%), Postives = 97/156 (62.18%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLT-LDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 539
            K +  PR P+EK+R+DAE +L+ +YGL+ KRELWR Q  L+  R  AR L   L   +P  I + + L+ ++ R   L E+   LD VL+L +E+ LERRL+TLV+K  +A ++  AR  I   HI+V  ++V IPSF+V    +  I ++ TSPF
Sbjct:    9 KKYSTPRHPWEKDRIDAERQLLIKYGLKNKRELWRAQTILTNFRTQARTLQAKLRYNDPLAIKQFQLLIGKLSRLNLLGENAT-LDDVLSLNIEDILERRLETLVYKKNLALTMKQARQFITHGHIKVNDRVVTIPSFMVEKSMEDSITYNETSPF 163          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_METB6 (30S ribosomal protein S4P OS=Methanoregula boonei (strain 6A8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.362e-25
Identity = 67/158 (42.41%), Postives = 97/158 (61.39%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL-DEKNPRRIFEGE--ALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 539
            K+++ P+RP+EK R++ E RLV EYGLR KRE+W+ Q  L + R AAR+LL L      + +FE +   L+  M R G L    + +D VLAL V   LERRLQTLV++ G+A+S   AR L+   HI +G + V +P ++V    +  I ++  SPF
Sbjct:    9 KSYQTPKRPFEKTRIEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHMQRAGLLGPDAD-IDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRVTVPGYLVTRGEETTISYAGKSPF 165          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_SULAC (30S ribosomal protein S4P OS=Sulfolobus acidocaldarius GN=rps4p PE=3 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 3.084e-25
Identity = 66/168 (39.29%), Postives = 99/168 (58.93%), Query Frame = 3
Query:   63 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLD--EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGR 560
            R   K +  P  P+ K  L  E  L+G+YGLR K+E+W  Q  +   R+ AR LL L   E+N R     + L+++++R G LE+  + LD +L+LT EN+LERRLQT+V+K G+A++I+ AR LI   HI +  + V  P +VV    +  I++  TSPF    P +
Sbjct:    5 RKSKKKWMGPSHPWIKINLGKEQILIGKYGLRNKKEIWIAQTMIRNFRHQARSLLALPPAERNIRE----KQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAISGRKVTSPGYVVLRGEEDLIDYYPTSPFKQNPPSQ 168          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_THEPD (30S ribosomal protein S4P OS=Thermofilum pendens (strain Hrk 5) GN=rps4p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.028e-25
Identity = 67/154 (43.51%), Postives = 91/154 (59.09%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 536
            K ++ P  P+ KE L  E++LVGEYGLR KRELW  +  L  IR  AR LL L  +   RI   + L+ R+++ G L      LD VL+LTV + LERRLQT+V++ G+A +I HAR LI   HI V  + V  P ++V  D +  I +   SP
Sbjct:    9 KKWQGPSHPWRKETLLEEMQLVGEYGLRNKRELWIAKSLLREIRAKARKLLALPAEE--RIKLEKPLVSRLYKMGLLPSEDASLDDVLSLTVRDVLERRLQTIVYRKGLATTIRHARQLITHGHIAVNSRRVRSPGYLVSRDEENFISYYEGSP 160          
The following BLAST results are available for this feature:
BLAST of CV884659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS9_ENCCU2.980e-2844.8540S ribosomal protein S9 OS=Encephalitozoon cunicu... [more]
RS4_STAMF2.980e-2844.5930S ribosomal protein S4P OS=Staphylothermus marin... [more]
RS4_METKA6.640e-2841.6730S ribosomal protein S4P OS=Methanopyrus kandleri... [more]
RS4_HYPBU7.341e-2742.7730S ribosomal protein S4P OS=Hyperthermus butylicu... [more]
RS4_METJA1.635e-2639.6430S ribosomal protein S4P OS=Methanocaldococcus ja... [more]
RS4_THEAC4.758e-2642.0430S ribosomal protein S4P OS=Thermoplasma acidophi... [more]
RS4_PICTO1.060e-2542.3130S ribosomal protein S4P OS=Picrophilus torridus ... [more]
RS4_METB62.362e-2542.4130S ribosomal protein S4P OS=Methanoregula boonei ... [more]
RS4_SULAC3.084e-2539.2930S ribosomal protein S4P OS=Sulfolobus acidocalda... [more]
RS4_THEPD4.028e-2543.5130S ribosomal protein S4P OS=Thermofilum pendens (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884659 ID=CV884659; Name=CV884659; organism=Citrus sinensis; type=EST; length=895bp
TCGCAGAGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCAC
GTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCC
CTATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTATG
GGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGAGCCGC
ATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACG
TCGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTACGGCT
TCTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTG
GAGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCAT
GGCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTA
GGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGAT
TCCCAGAAGCACATTGAATTCTCACTGACAAGTCCATTCGGAGGTGGCCG
CCCTGGAAGAGTGAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGCCG
CAGGTGGAGATGGAGATGAAGAGGATGAAGAATAAATTACCTGTGTGAAC
AGATAGTTTTTTTATGGTTACAGTAGGAATTCTGGCTGAACTTTGCAAGT
GGACTTATCTTCTCTAAGTTTTATGTTTTTGTTTGCGAATTTTCTTGCTA
TAATAGGAGGTTTTGCTTGCTTTGTGTCGCATATCTATAGATAGATAGAT
AGATAGGTAGTTTCTGCTCCTGGAGAGTTTCATTTATCGAGAATAAGCTT
GGGCTTTAGATGGGTTTGTAATCAGCTCTCTCATTGGGTGCGACT
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