CV884659

Overview
NameCV884659
Unique NameCV884659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884659_ssr5 microsatellite CV884659_ssr5:5..14. BLAST: Citrus ESTs to Prunus persica proteins V1
CV884659_ssr787 microsatellite CV884659_ssr787:787..806. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.028e-25
Identity = 63/168 (37.50%), Postives = 98/168 (58.33%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 578
            + ++ P  P+ +  L+ E  L+G+YGLR KRELW  Q  + + R+ AR LL L      R    + L+++++R G +E+    LD +L L  EN+LERRLQT+V+K G+A++I+ AR LI   HI +G + V  P ++V    +  I+F  TSPF    P +    N+
Sbjct:    9 RKWEGPGHPWIRINLEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENV 174          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.871e-25
Identity = 67/159 (42.14%), Postives = 93/159 (58.49%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 551
            K ++ P  P+ KERLD E  LV +Y L+ K+ELW+ +  L   R  AR LL    K      E   LL+R+ R G L E  + LD VL+LT+++ LERRLQTLVFK G+A++I  AR LI   HI V  Q++  PS++V  + +  I +   SPF   +
Sbjct:    9 KRYETPSHPWIKERLDRERVLVQKYALKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPFANSQ 164          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 6.871e-25
Identity = 67/155 (43.23%), Postives = 93/155 (60.00%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 539
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LTVE+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLSRLKRLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPF 160          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.974e-25
Identity = 67/155 (43.23%), Postives = 92/155 (59.35%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 539
            K ++ P  P+ KERLD E  L  +Y L+ K+ELWR +  L   R  AR LL    K      E + LL+R+HR G L  +   LD VL+LTVE+ LERRLQTLV+K G+A++I  AR LI   HI V  Q++  P ++V  + +  I ++  SPF
Sbjct:    9 KKYETPSHPWIKERLDRERVLKRKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERQQLLQRLHRLGLLP-ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSPF 160          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.172e-24
Identity = 67/155 (43.23%), Postives = 93/155 (60.00%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 539
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELWR +  L   R  AR LL    K      E   LL+R++R G L  +   LD VL+LTVE+ L+RRLQT+VFK G+A++I  AR LI   HI V  Q++  P ++V  + +  I +S TSPF
Sbjct:    9 KKYETPSHPWIKERLDRERVLMKKYALKNKKELWRHETQLKEFRRRARRLLAARGKQAE--IERAQLLQRLNRLGLLP-ADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.172e-24
Identity = 66/155 (42.58%), Postives = 93/155 (60.00%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 539
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.172e-24
Identity = 66/155 (42.58%), Postives = 93/155 (60.00%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 539
            K ++ P  P+ KERLD E  L+ +Y L+ K+ELW+ +  L   R  AR LL    K      E E LL R+ R G L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:    9 KKYETPPHPWIKERLDRERVLMDKYELKNKKELWKHETQLKNFRRRARRLLAARGKQAE--IEREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.172e-24
Identity = 62/164 (37.80%), Postives = 97/164 (59.15%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRI-FEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGR 560
            KT+ +PR+P+E +R+  E+ L+  YGLR KRELW+ +  L + R   R LL    +   R   E  A++ R+ R+G L++  + LD +L+L + + LERRLQT V++ G+A +I  AR  I   HI+V  Q V +PS++V+   +  I++   SP    G P R
Sbjct:    9 KTYDRPRKPWEADRMANEVELIKTYGLRNKRELWKAESILRKYRRVGRMLLASKARGEARADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPLAREGHPER 171          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.999e-24
Identity = 63/162 (38.89%), Postives = 98/162 (60.49%), Query Frame = 3
Query:   63 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL----DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 536
            + + K +  P  P++K RL+ E++LV +YGLR KRELWR Q  L + R  ARDLL       ++      + + +++++++ G L E+   LD +L L+VE+FLERRLQT+V++ G+A++I  AR  I   HI V  + V  PSF+V  + +  I F   SP
Sbjct:    5 KRHRKKYTTPTHPWDKARLEKEMQLVIKYGLRNKRELWRFQNILRKYRRVARDLLAEIGLPGKEGEIAKAKAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSP 165          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.611e-24
Identity = 59/155 (38.06%), Postives = 92/155 (59.35%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 539
            K ++ P+ P+ KERL+ E  L+G YGLR K+ELW+ +    R R+ AR LL L  +  R       L+  ++R G ++     +D VL +  E  LERRLQT+V+K G+AK+I+ AR L+   HI +  + V  P ++V  + +K I+++  SPF
Sbjct:    9 KKWEGPKHPWIKERLERERELMGRYGLRNKKELWKAETLARRFRHRARSLLGLPPEVRREA--SRVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161          
The following BLAST results are available for this feature:
BLAST of CV884659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_SULTO4.028e-2537.5030S ribosomal protein S4P OS=Sulfolobus tokodaii G... [more]
RS4_THESM6.871e-2542.1430S ribosomal protein S4P OS=Thermococcus sibiricu... [more]
RS4_PYRHO6.871e-2543.2330S ribosomal protein S4P OS=Pyrococcus horikoshii... [more]
RS4_THEGJ8.974e-2543.2330S ribosomal protein S4P OS=Thermococcus gammatol... [more]
RS4_THEON1.172e-2443.2330S ribosomal protein S4P OS=Thermococcus onnurine... [more]
RS4_PYRFU1.172e-2442.5830S ribosomal protein S4P OS=Pyrococcus furiosus G... [more]
RS4_PYRAB1.172e-2442.5830S ribosomal protein S4P OS=Pyrococcus abyssi GN=... [more]
RS4_METTP1.172e-2437.8030S ribosomal protein S4P OS=Methanosaeta thermoph... [more]
RS4_ARCFU1.999e-2438.8930S ribosomal protein S4P OS=Archaeoglobus fulgidu... [more]
RS4_AERPE2.611e-2438.0630S ribosomal protein S4P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884659 ID=CV884659; Name=CV884659; organism=Citrus sinensis; type=EST; length=895bp
TCGCAGAGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCAC
GTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCC
CTATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTATG
GGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGAGCCGC
ATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACG
TCGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTACGGCT
TCTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTG
GAGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCAT
GGCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTA
GGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGAT
TCCCAGAAGCACATTGAATTCTCACTGACAAGTCCATTCGGAGGTGGCCG
CCCTGGAAGAGTGAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGCCG
CAGGTGGAGATGGAGATGAAGAGGATGAAGAATAAATTACCTGTGTGAAC
AGATAGTTTTTTTATGGTTACAGTAGGAATTCTGGCTGAACTTTGCAAGT
GGACTTATCTTCTCTAAGTTTTATGTTTTTGTTTGCGAATTTTCTTGCTA
TAATAGGAGGTTTTGCTTGCTTTGTGTCGCATATCTATAGATAGATAGAT
AGATAGGTAGTTTCTGCTCCTGGAGAGTTTCATTTATCGAGAATAAGCTT
GGGCTTTAGATGGGTTTGTAATCAGCTCTCTCATTGGGTGCGACT
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