CV884659

Overview
NameCV884659
Unique NameCV884659
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884659_ssr5 microsatellite CV884659_ssr5:5..14. BLAST: Citrus ESTs to Prunus persica proteins V1
CV884659_ssr787 microsatellite CV884659_ssr787:787..806. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.817e-24
Identity = 60/160 (37.50%), Postives = 95/160 (59.38%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 554
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L++    +D +L+LT ++ LERRLQT+V+K G++ +I+ AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWETPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_METS5 (30S ribosomal protein S4P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.296e-23
Identity = 58/164 (35.37%), Postives = 97/164 (59.15%), Query Frame = 3
Query:   63 RNYGKTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 554
            R   + ++ P  P+  + L +E +++G+YGLR K+E+W  +  ++  R+ AR LL L      R    + LL ++++ G L+  Q+ +D +L L  E+ LERRLQT+V + G+A++I+ AR LI   HI VG + +  P ++V+ D +  I+F  TSPF    P
Sbjct:    5 RKSRRKWEGPGMPWLSQALKSEQKIMGDYGLRNKKEIWLARTIVTGYRHMARSLLALPPAE--RAVREKQLLGKLYKLGLLKSEQSTIDDILGLEEESLLERRLQTIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVKRDEEDSIDFYPTSPFKNNPP 166          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_METPE (30S ribosomal protein S4P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.296e-23
Identity = 66/170 (38.82%), Postives = 99/170 (58.24%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTL---DEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 575
            K ++ P+RP+EK+R++ E R+V EYGLR KRE+WR Q  L R R AAR+LL          +   + E LL  ++R G L    +  D VL+L ++  LERRLQT+V++ G+A+S   AR ++   HI +  + V+IPS+ V  D +  I +  TSP        ++R N
Sbjct:    9 KGYEAPKRPFEKQRIEDETRIVIEYGLRNKREVWRAQSVLRRYRKAARELLAFMSQSSDEQQIATKKEHLLGHLNRIGLLGPDADIGD-VLSLKIQQPLERRLQTMVYRQGLARSPKQARQMVTHGHIAIAGRRVDIPSYRVPRDQETLISYYGTSPLTSEGHPEIERIN 177          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_METLZ (30S ribosomal protein S4P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.296e-23
Identity = 62/168 (36.90%), Postives = 97/168 (57.74%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDE---KNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 569
            K +  P+R +EK R+++E  L   YGLR KRE+WR    L + R+ AR++L +     + P+ I   + L+  + RYG L      +D +L+L VE+ LERRLQT+V++ G+A+S   AR LI   HI +  Q V++PS++V +  +  I +  TS  G    G  +R
Sbjct:    9 KQYSSPKRRFEKSRIESERVLAITYGLRNKREIWRATEVLRKHRSGAREVLAMTSSIGEAPKTIARRDELVGTLQRYGLLGPDA-AMDNILSLKVEDILERRLQTIVYRKGLARSPKQARQLITHGHIAINGQRVSVPSYMVSIAEEAGIMYYATSSLGDEANGERQR 175          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.692e-23
Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = 3
Query:  402 AKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 575
            AKS+HHARVLIRQRHIRVGRQ+VN+PSF+VR+DSQKHI+FSL SPFGGGRPGRVKR+N
Sbjct:    1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKN 58          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_SULIY (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.692e-23
Identity = 60/160 (37.50%), Postives = 93/160 (58.13%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 554
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_SULIN (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.692e-23
Identity = 60/160 (37.50%), Postives = 93/160 (58.13%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 554
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_SULIM (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.692e-23
Identity = 60/160 (37.50%), Postives = 93/160 (58.13%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 554
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_SULIL (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.692e-23
Identity = 60/160 (37.50%), Postives = 93/160 (58.13%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 554
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV884659 vs. ExPASy Swiss-Prot
Match: RS4_SULIK (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.692e-23
Identity = 60/160 (37.50%), Postives = 93/160 (58.13%), Query Frame = 3
Query:   75 KTFKKPRRPYEKERLDAELRLVGEYGLRCKRELWRVQYALSRIRNAARDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 554
            K ++ P  P+ KER+  E  L+G+YGLR KRE+W  Q  + + R+ AR LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:    9 KKWESPGHPWIKERIGYEQELLGKYGLRNKREIWIAQSIIRKFRHQARSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
The following BLAST results are available for this feature:
BLAST of CV884659 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RS4_SULSO5.817e-2437.5030S ribosomal protein S4P OS=Sulfolobus solfataric... [more]
RS4_METS51.296e-2335.3730S ribosomal protein S4P OS=Metallosphaera sedula... [more]
RS4_METPE1.296e-2338.8230S ribosomal protein S4P OS=Methanosphaerula palu... [more]
RS4_METLZ1.296e-2336.9030S ribosomal protein S4P OS=Methanocorpusculum la... [more]
RS9_TOBAC1.692e-2386.2140S ribosomal protein S9 (Fragment) OS=Nicotiana t... [more]
RS4_SULIY1.692e-2337.5030S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIN1.692e-2337.5030S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIM1.692e-2337.5030S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIL1.692e-2337.5030S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIK1.692e-2337.5030S ribosomal protein S4P OS=Sulfolobus islandicus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G08_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884659 ID=CV884659; Name=CV884659; organism=Citrus sinensis; type=EST; length=895bp
TCGCAGAGAGAGAGTGAGGGTAGCACCAGCGGCGCGCAAAGATGGTGCAC
GTTTCATTCTACCGCAACTATGGGAAAACCTTCAAGAAGCCAAGACGTCC
CTATGAGAAGGAGCGATTGGATGCTGAGTTGAGACTTGTGGGAGAGTATG
GGCTTCGCTGCAAGAGGGAACTCTGGAGGGTTCAATATGCACTGAGCCGC
ATCCGAAATGCTGCGAGGGATCTTCTCACTCTCGATGAGAAGAACCCACG
TCGTATTTTCGAGGGTGAGGCTCTTCTCAGGAGGATGCACAGGTACGGCT
TCTTGGAAGAGAGCCAGAACAAGCTTGATTATGTGTTGGCCCTCACTGTG
GAGAACTTTCTTGAGCGTCGTCTCCAGACCCTTGTGTTCAAGAGTGGCAT
GGCTAAGTCAATTCACCATGCTCGAGTGCTCATCAGGCAGAGGCACATTA
GGGTTGGAAGGCAGCTTGTCAACATTCCCTCATTTGTAGTGAGGGTTGAT
TCCCAGAAGCACATTGAATTCTCACTGACAAGTCCATTCGGAGGTGGCCG
CCCTGGAAGAGTGAAGAGAAGGAACATCAAGGCTGCTGCCAAGAAGGCCG
CAGGTGGAGATGGAGATGAAGAGGATGAAGAATAAATTACCTGTGTGAAC
AGATAGTTTTTTTATGGTTACAGTAGGAATTCTGGCTGAACTTTGCAAGT
GGACTTATCTTCTCTAAGTTTTATGTTTTTGTTTGCGAATTTTCTTGCTA
TAATAGGAGGTTTTGCTTGCTTTGTGTCGCATATCTATAGATAGATAGAT
AGATAGGTAGTTTCTGCTCCTGGAGAGTTTCATTTATCGAGAATAAGCTT
GGGCTTTAGATGGGTTTGTAATCAGCTCTCTCATTGGGTGCGACT
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