CV884658

Overview
NameCV884658
Unique NameCV884658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884658_ssr201 microsatellite CV884658_ssr201:201..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS9A_SCHPO (40S ribosomal protein S9-A OS=Schizosaccharomyces pombe GN=rps9a PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 4.439e-46
Identity = 86/121 (71.07%), Postives = 110/121 (90.91%), Query Frame = -3
Query:  429 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 791
            R+LLTLDEK+P+R+FEG A++RR+ R G L+E++ KLDYVLAL +E+FLERRLQT VFK G+AKSIHHARVLI QRHIRVG+Q+VN+PSFVVR+D+QKHI+F+L+SP+GGGRPGR KR+ +
Sbjct:   57 RELLTLDEKDPKRLFEGNAIIRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRL 177          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS9_CAEEL (40S ribosomal protein S9 OS=Caenorhabditis elegans GN=rps-9 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 8.372e-45
Identity = 85/121 (70.25%), Postives = 108/121 (89.26%), Query Frame = -3
Query:  429 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 791
            R+LLTL++K+P+R+FEG ALLRR+ + G L+E++ KLDYVL L VE+FLERRLQT VFK G+AKSIHHAR+LI+Q HIRV RQ+V++PSF+VR+DSQKHI+FSL SP+GGGRPGRVKRR +
Sbjct:   57 RELLTLEDKDPKRLFEGNALLRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRVRRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGRPGRVKRRTL 177          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS9B_YEAST (40S ribosomal protein S9-B OS=Saccharomyces cerevisiae GN=RPS9B PE=1 SV=4)

HSP 1 Score: 180.644 bits (457), Expect = 8.372e-45
Identity = 87/120 (72.50%), Postives = 104/120 (86.67%), Query Frame = -3
Query:  432 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 791
            RDLLT DEK+P+R+FEG AL+RR+ R G L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:   57 RDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS9A_YEAST (40S ribosomal protein S9-A OS=Saccharomyces cerevisiae GN=RPS9A PE=1 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 8.372e-45
Identity = 87/120 (72.50%), Postives = 104/120 (86.67%), Query Frame = -3
Query:  432 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 791
            RDLLT DEK+P+R+FEG AL+RR+ R G L E + KLDYVLAL VE+FLERRLQT V+K G+AKS+HHARVLI QRHI VG+Q+VNIPSF+VR+DS+KHI+F+ TSPFGG RPGRV RRN
Sbjct:   57 RDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKVEDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLDSEKHIDFAPTSPFGGARPGRVARRN 176          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS9_DICDI (40S ribosomal protein S9 OS=Dictyostelium discoideum GN=rps9 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.182e-44
Identity = 84/119 (70.59%), Postives = 105/119 (88.24%), Query Frame = -3
Query:  435 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRR 791
            R+LL LDEK+P+RIFEG ALLRR+H+ G +EES+NKLDY+L L V++F+ERRLQTLVFK+G+AKSIHHARVLI+ RHIRVG+QLVN+PSF+VRV+SQKH+  + TSP  GGRPGR  R+
Sbjct:   54 RELLVLDEKDPKRIFEGSALLRRLHKLGVMEESKNKLDYILNLKVQDFMERRLQTLVFKNGLAKSIHHARVLIKGRHIRVGKQLVNVPSFLVRVESQKHLGLASTSPLAGGRPGRRARK 172          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS9_TRYBB (Probable 40S ribosomal protein S9 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.134e-40
Identity = 79/118 (66.95%), Postives = 98/118 (83.05%), Query Frame = -3
Query:  438 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 791
            R LLTL E +PRR+ EG A++RR H YGFL+E ++KLDYVL+LTV + LERRLQT+VFK G+AKS+HH+RVLI+QRHI V +Q+V IPSF+VRV S+ HI F+  SPFG GRPGRVKR
Sbjct:   56 RLLLTLPENHPRRLLEGSAIMRRCHGYGFLDEDKDKLDYVLSLTVPDILERRLQTVVFKHGLAKSVHHSRVLIQQRHIAVAKQIVTIPSFIVRVSSEHHIAFADASPFGNGRPGRVKR 173          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS9_NAEFO (40S ribosomal protein S9 OS=Naegleria fowleri GN=RPS9 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 5.091e-34
Identity = 74/122 (60.66%), Postives = 95/122 (77.87%), Query Frame = -3
Query:  429 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFS-LTSPFGGGRPGRVKRRNI 791
            R LLTL E + +R FEG ALLRRM R G L+ES+ +LDY+L+L  E+ LERRLQT+V K G++KSIHHAR LI QRHIRVG+Q VN+PSF+VRVDS+KHI  S  ++   GG+PGR+ R+ +
Sbjct:   59 RHLLTLPEDDMKRQFEGAALLRRMTRLGLLDESKQQLDYILSLKTEDLLERRLQTVVQKLGLSKSIHHARQLIFQRHIRVGKQTVNVPSFIVRVDSEKHINMSPFSALVQGGKPGRMTRKKL 180          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS9_ENTHI (40S ribosomal protein S9 OS=Entamoeba histolytica GN=2.t00127 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 2.214e-29
Identity = 66/119 (55.46%), Postives = 88/119 (73.95%), Query Frame = -3
Query:  432 LLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR-PGRVKRRN 785
            +L  D K+P+R+ EG ALLRR+H  G L   QNKL++VLAL  EN LERRLQTLV++ G AKSIHHARVLIR + I+VG+Q+V++PSF+VRV+S+  I+ +  +P       GR KR+N
Sbjct:   59 MLMKDAKDPKRLLEGAALLRRLHNLGILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVPSFLVRVESEPLIQLADNTPLTNPEINGRRKRKN 177          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS9_TOBAC (40S ribosomal protein S9 (Fragment) OS=Nicotiana tabacum GN=RPS9 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.390e-23
Identity = 50/58 (86.21%), Postives = 57/58 (98.28%), Query Frame = -3
Query:  432 AKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRN 605
            AKS+HHARVLIRQRHIRVGRQ+VN+PSF+VR+DSQKHI+FSL SPFGGGRPGRVKR+N
Sbjct:    1 AKSVHHARVLIRQRHIRVGRQVVNVPSFMVRLDSQKHIDFSLISPFGGGRPGRVKRKN 58          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS9_PIG (40S ribosomal protein S9 (Fragment) OS=Sus scrofa GN=RPS9 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.281e-23
Identity = 53/75 (70.67%), Postives = 63/75 (84.00%), Query Frame = -3
Query:  567 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQ 791
            R+LLTLDEK+PRR+FEG ALLRR+ R G L+E + KLDY+L L +E+FLERRLQT VFK G+A SIHH RVLIRQ
Sbjct:   56 RELLTLDEKDPRRLFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAXSIHHXRVLIRQ 130          
The following BLAST results are available for this feature:
BLAST of CV884658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RS9A_SCHPO4.439e-4671.0740S ribosomal protein S9-A OS=Schizosaccharomyces ... [more]
RS9_CAEEL8.372e-4570.2540S ribosomal protein S9 OS=Caenorhabditis elegans... [more]
RS9B_YEAST8.372e-4572.5040S ribosomal protein S9-B OS=Saccharomyces cerevi... [more]
RS9A_YEAST8.372e-4572.5040S ribosomal protein S9-A OS=Saccharomyces cerevi... [more]
RS9_DICDI3.182e-4470.5940S ribosomal protein S9 OS=Dictyostelium discoide... [more]
RS9_TRYBB2.134e-4066.95Probable 40S ribosomal protein S9 OS=Trypanosoma b... [more]
RS9_NAEFO5.091e-3460.6640S ribosomal protein S9 OS=Naegleria fowleri GN=R... [more]
RS9_ENTHI2.214e-2955.4640S ribosomal protein S9 OS=Entamoeba histolytica ... [more]
RS9_TOBAC1.390e-2386.2140S ribosomal protein S9 (Fragment) OS=Nicotiana t... [more]
RS9_PIG5.281e-2370.6740S ribosomal protein S9 (Fragment) OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884658 ID=CV884658; Name=CV884658; organism=Citrus sinensis; type=EST; length=793bp
TTTTTTTTTTGCCATAGGAACACATGTTTATGCTACGCTTTTCACACGTG
TGTGCGAGCACCGCAAAATATTCTAATCTCGTGTGAACAGCCCACGTGAA
GCCCAAGCACGAGTCGCACCCAATGAGAGAGCTGATTACAAACCCATCTA
AAGCCCAAGCTTATTCTCGATAAATGAAACTCTCCAGGAGCAGAAACTAC
CTATCTATCTATCTATCTATAGATATGCGACACAAAGCAAGCAAAACCTC
CTATTATAGCAAGAAAATTCGCAAACAAAAACATAAAACTTAGAGAAGAT
AAGTCCACTTGCAAAGTTCAGCCAGAATTCCTACTGTAACCATAAAAAAA
CTATCTGTTCACACAGGTAATTTATTCTTCATCCTCTTCATCTCCATCTC
CACCTGCGGCCTTCTTGGCAGCAGCCTTGATGTTCCTTCTCTTCACTCTT
CCAGGGCGGCCACCTCCGAATGGACTTGTCAGTGAGAATTCAATGTGCTT
CTGGGAATCAACCCTCACTACAAATGAGGGAATGTTGACAAGCTGCCTTC
CAACCCTAATGTGCCTCTGCCTGATGAGCACTCGAGCATGGTGAATTGAC
TTAGCCATGCCACTCTTGAACACAAGGGTCTGGAGACGACGCTCAAGAAA
GTTCTCCACAGTGAGGGCCAACACATAATCAAGCTTGTTCTGGCTCTCTT
CCAAGAAGCCGTACCTGTGCATCCTCCTGAGAAGAGCCTTACCCTCGAAA
ATACGACGTGGGTTCTTCTCATCGAGAGTGAGAAGATCCCTCG
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