CV884658

Overview
NameCV884658
Unique NameCV884658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884658_ssr201 microsatellite CV884658_ssr201:201..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS9_ENCCU (40S ribosomal protein S9 OS=Encephalitozoon cuniculi GN=RPS9 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.315e-17
Identity = 51/118 (43.22%), Postives = 74/118 (62.71%), Query Frame = -3
Query:  465 RDLLTLDEKNPRRI-FEGKALLRRMHRYGFL--------EESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG 791
            R  + L   NP  I   G++LLRR+ +YG L        +E  N L+ VL LT+ ++LERRLQ  VF +G+AKS+HHAR+LI  R I +  Q+V++P F+VR D +  IE++  S +G
Sbjct:   53 RARILLTSTNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_IGNH4 (30S ribosomal protein S4P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.260e-16
Identity = 48/108 (44.44%), Postives = 73/108 (67.59%), Query Frame = -3
Query:  468 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 791
            R+LL L  +   +  E KALL+R++  G ++E+   LD VL+LTV + LERRLQT+V+K G+AKSI+HAR L+   HI +  + V  P ++VR D ++ I ++ TSP+
Sbjct:   56 RELLALPAEVREK--EEKALLKRLYDLGLVDENAT-LDDVLSLTVRDLLERRLQTVVYKKGLAKSIYHARQLVTHGHIAINGRRVTSPGYIVRRDEEELIGYAPTSPY 160          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_SULAC (30S ribosomal protein S4P OS=Sulfolobus acidocaldarius GN=rps4p PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 8.166e-16
Identity = 48/117 (41.03%), Postives = 72/117 (61.54%), Query Frame = -3
Query:  447 RDLLTLD--EKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGR 791
            R LL L   E+N R     K L+++++R G LE+  + LD +L+LT EN+LERRLQT+V+K G+A++I+ AR LI   HI +  + V  P +VV    +  I++  TSPF    P +
Sbjct:   56 RSLLALPPAERNIRE----KQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAISGRKVTSPGYVVLRGEEDLIDYYPTSPFKQNPPSQ 168          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_STAMF (30S ribosomal protein S4P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15
Identity = 41/91 (45.05%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  468 KALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 740
            KALL R++R G L E+ + L+ VL LTVE+ LERRLQT+V+K G+A++I+HAR LI   HI +  + +  P ++V  + +  ++++ TSPF
Sbjct:   71 KALLNRLYRLGLLHENAS-LEDVLGLTVEDLLERRLQTIVYKKGLARTIYHARQLIIHGHIAIAGRRITSPGYIVSREEEDLVDYAPTSPF 160          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.053e-15
Identity = 41/104 (39.42%), Postives = 64/104 (61.54%), Query Frame = -3
Query:  429 KALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 740
            K L+++++R G +E+    LD +L L  EN+LERRLQT+V+K G+A++I+ AR LI   HI +G + V  P ++V    +  I+F  TSPF    P +    N+
Sbjct:   71 KQLIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENV 174          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_METS5 (30S ribosomal protein S4P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.029e-15
Identity = 44/113 (38.94%), Postives = 66/113 (58.41%), Query Frame = -3
Query:  453 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 791
            R LL L      R    K LL ++++ G L+  Q+ +D +L L  E+ LERRLQT+V + G+A++I+ AR LI   HI VG + +  P ++V+ D +  I+F  TSPF    P
Sbjct:   56 RSLLALPPAE--RAVREKQLLGKLYKLGLLKSEQSTIDDILGLEEESLLERRLQTIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVKRDEEDSIDFYPTSPFKNNPP 166          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_HYPBU (30S ribosomal protein S4P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14
Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = -3
Query:  456 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 746
            E KALL R++  G L E+   LD VL LT E+FLERRLQT+V+K G+A++I+ AR LI   HI +  + +  P ++V+ D +  ++++ TSP+   R
Sbjct:   69 EEKALLARLNELGVLPENAT-LDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPYAKRR 164          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.431e-14
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = -3
Query:  468 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 746
            E + LL+R+HR G L  +   LD VL+LTVE+ LERRLQTLV+K G+A++I  AR LI   HI V  Q++  P ++V  + +  I ++  SPF
Sbjct:   69 ERQQLLQRLHRLGLLP-ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSPF 160          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.431e-14
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = -3
Query:  468 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 746
            E + LL R+ R G L E    LD VL+LTVE+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:   69 EREQLLSRLKRLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPF 160          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.481e-14
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = -3
Query:  456 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 746
            E   LL+R+ R G L E  + LD VL+LT+++ LERRLQTLVFK G+A++I  AR LI   HI V  Q++  PS++V  + +  I +   SPF   +
Sbjct:   69 ERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPFANSQ 164          
The following BLAST results are available for this feature:
BLAST of CV884658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RS9_ENCCU3.315e-1743.2240S ribosomal protein S9 OS=Encephalitozoon cunicu... [more]
RS4_IGNH41.260e-1644.4430S ribosomal protein S4P OS=Ignicoccus hospitalis... [more]
RS4_SULAC8.166e-1641.0330S ribosomal protein S4P OS=Sulfolobus acidocalda... [more]
RS4_STAMF2.376e-1545.0530S ribosomal protein S4P OS=Staphylothermus marin... [more]
RS4_SULTO4.053e-1539.4230S ribosomal protein S4P OS=Sulfolobus tokodaii G... [more]
RS4_METS59.029e-1538.9430S ribosomal protein S4P OS=Metallosphaera sedula... [more]
RS4_HYPBU1.540e-1443.3030S ribosomal protein S4P OS=Hyperthermus butylicu... [more]
RS4_THEGJ3.431e-1446.2430S ribosomal protein S4P OS=Thermococcus gammatol... [more]
RS4_PYRHO3.431e-1446.2430S ribosomal protein S4P OS=Pyrococcus horikoshii... [more]
RS4_THESM4.481e-1444.3330S ribosomal protein S4P OS=Thermococcus sibiricu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884658 ID=CV884658; Name=CV884658; organism=Citrus sinensis; type=EST; length=793bp
TTTTTTTTTTGCCATAGGAACACATGTTTATGCTACGCTTTTCACACGTG
TGTGCGAGCACCGCAAAATATTCTAATCTCGTGTGAACAGCCCACGTGAA
GCCCAAGCACGAGTCGCACCCAATGAGAGAGCTGATTACAAACCCATCTA
AAGCCCAAGCTTATTCTCGATAAATGAAACTCTCCAGGAGCAGAAACTAC
CTATCTATCTATCTATCTATAGATATGCGACACAAAGCAAGCAAAACCTC
CTATTATAGCAAGAAAATTCGCAAACAAAAACATAAAACTTAGAGAAGAT
AAGTCCACTTGCAAAGTTCAGCCAGAATTCCTACTGTAACCATAAAAAAA
CTATCTGTTCACACAGGTAATTTATTCTTCATCCTCTTCATCTCCATCTC
CACCTGCGGCCTTCTTGGCAGCAGCCTTGATGTTCCTTCTCTTCACTCTT
CCAGGGCGGCCACCTCCGAATGGACTTGTCAGTGAGAATTCAATGTGCTT
CTGGGAATCAACCCTCACTACAAATGAGGGAATGTTGACAAGCTGCCTTC
CAACCCTAATGTGCCTCTGCCTGATGAGCACTCGAGCATGGTGAATTGAC
TTAGCCATGCCACTCTTGAACACAAGGGTCTGGAGACGACGCTCAAGAAA
GTTCTCCACAGTGAGGGCCAACACATAATCAAGCTTGTTCTGGCTCTCTT
CCAAGAAGCCGTACCTGTGCATCCTCCTGAGAAGAGCCTTACCCTCGAAA
ATACGACGTGGGTTCTTCTCATCGAGAGTGAGAAGATCCCTCG
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