CV884658
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14 Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = -3 Query: 468 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 746 E + LL R+ R G L E LD VL+LT+E+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 69 EREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14 Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = -3 Query: 468 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 746 E + LL R+ R G L E LD VL+LT+E+ LERRLQT+V+K G+A+++ AR LI HI V Q++ PS++V + + I ++ TSPF Sbjct: 69 EREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_METJA (30S ribosomal protein S4P OS=Methanocaldococcus jannaschii GN=rps4p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.852e-14 Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = -3 Query: 441 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRVK 746 E L + +YG L+ LD VL+LTVE+ LERRLQTLVF+ G+A++ AR LI HI V ++V PS++V V+ + I ++ SPF P R K Sbjct: 70 EAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.643e-14 Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = -3 Query: 468 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 746 E LL+R++R G L + LD VL+LTVE+ L+RRLQT+VFK G+A++I AR LI HI V Q++ P ++V + + I +S TSPF Sbjct: 69 ERAQLLQRLNRLGLLP-ADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_METKA (30S ribosomal protein S4P OS=Methanopyrus kandleri GN=rps4p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.643e-14 Identity = 39/100 (39.00%), Postives = 67/100 (67.00%), Query Frame = -3 Query: 471 NPRRIFEGKALLRRMHRYGFLEESQNK--LDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 764 +P E +AL R+++ G L++ + LD +L LTVE+ LERRLQT+V++ G+AK+ AR L+ RHI +G ++V +PS++V + ++ +++S SP Sbjct: 63 DPEAQREREALFRKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQLVVHRHIAIGDRIVTVPSYLVSREEEEEVDYSPYSP 162
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_THEPD (30S ribosomal protein S4P OS=Thermofilum pendens (strain Hrk 5) GN=rps4p PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.450e-13 Identity = 44/107 (41.12%), Postives = 61/107 (57.01%), Query Frame = -3 Query: 471 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 791 R LL L + RI K L+ R+++ G L LD VL+LTV + LERRLQT+V++ G+A +I HAR LI HI V + V P ++V D + I + SP Sbjct: 56 RKLLALPAEE--RIKLEKPLVSRLYKMGLLPSEDASLDDVLSLTVRDVLERRLQTIVYRKGLATTIRHARQLITHGHIAVNSRRVRSPGYLVSRDEENFISYYEGSP 160
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.441e-12 Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = -3 Query: 453 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 791 R LL L R K L+ ++ + G L++ +D +L+LT ++ LERRLQT+V+K G++ +I+ AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_PYRKO (30S ribosomal protein S4P OS=Pyrococcus kodakaraensis GN=rps4p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.459e-12 Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = -3 Query: 444 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRV 746 E + LL+R++R G L + LD VL+LTVE+ LERRLQT+V++ G+A+++ AR LI HI V Q++ P ++V + + I ++ SPF G P R+ Sbjct: 69 ERQQLLQRLYRLGLLP-ADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIEVNGQVIRSPGYLVLREEEDTITYAKGSPFAKEGHPERM 169
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.194e-12 Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = -3 Query: 516 LTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 782 +T +E+ P + ++++ GF+E+ LD +L+L V LERRLQTLVF+ G+AKSIHHAR L+ H+ V + V P F+V Sbjct: 63 MTAEERAPLEV----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_SULIY (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps4p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12 Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = -3 Query: 453 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 791 R LL L R K L+ ++ + G L+ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166 The following BLAST results are available for this feature:
BLAST of CV884658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884658 ID=CV884658; Name=CV884658; organism=Citrus sinensis; type=EST; length=793bpback to top |