CV884658
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_SULIN (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12 Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = -3 Query: 453 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 791 R LL L R K L+ ++ + G L+ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_SULIM (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12 Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = -3 Query: 453 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 791 R LL L R K L+ ++ + G L+ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_SULIL (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12 Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = -3 Query: 453 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 791 R LL L R K L+ ++ + G L+ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_SULIK (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12 Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = -3 Query: 453 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 791 R LL L R K L+ ++ + G L+ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_SULIA (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.27) GN=rps4p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12 Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = -3 Query: 453 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 791 R LL L R K L+ ++ + G L+ +D +L+LT ++ LERRLQT+V+K G+A + + AR LI HI V + V P ++V VD + I++ +TS F P Sbjct: 56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_METM7 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4p PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12 Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = -3 Query: 471 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 746 E L + RY L E + LD+VL+L +E+ LERRLQT+V+K G+AK+ AR I HI V + V PS++V V IE+ SP Sbjct: 69 EAVQLFNVLKRYAILVEQEPTLDHVLSLNIESILERRLQTMVYKKGLAKTAKQARQFIVHGHIAVNGKRVTSPSYLVSVAENDAIEYVPNSP 160
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_METM5 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4p PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12 Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = -3 Query: 471 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 746 E L + RY L ES+ LD+VL+L +E+ LERRLQT+V++ G+AK+ AR I HI V + V P+++V V IE+ SP Sbjct: 69 EAVQLFNVLKRYAILVESEPTLDHVLSLNIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12 Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = -3 Query: 516 LTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 782 +T +E+ P + ++++ GF+E+ +LD +L+L V LERRLQT+V++ G+AKSIHHAR LI H+ V + V P F+V Sbjct: 63 MTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_METVS (30S ribosomal protein S4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12 Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = -3 Query: 471 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 746 E L + RY L E + LD++L+L +E+ LERRLQTLV++ G+AK+ AR LI HI V + V PS++V V I + SP Sbjct: 69 EAVQLFNVLKRYAILVEQEPTLDHILSLNIESILERRLQTLVYRKGLAKTAKQARQLIVHGHIAVNGRRVTSPSYLVSVSENNAIGYVPNSP 160
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12 Identity = 39/105 (37.14%), Postives = 62/105 (59.05%), Query Frame = -3 Query: 447 RRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGR 758 R E A++ R+ R+G L++ + LD +L+L + + LERRLQT V++ G+A +I AR I HI+V Q V +PS++V+ + I++ SP G P R Sbjct: 68 RADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPLAREGHPER 171 The following BLAST results are available for this feature:
BLAST of CV884658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 59
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Sequences
The
following sequences are available for this feature:
EST sequence >CV884658 ID=CV884658; Name=CV884658; organism=Citrus sinensis; type=EST; length=793bpback to top |