CV884658

Overview
NameCV884658
Unique NameCV884658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884658_ssr201 microsatellite CV884658_ssr201:201..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_SULIN (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps4p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = -3
Query:  453 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 791
            R LL L      R    K L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_SULIM (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = -3
Query:  453 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 791
            R LL L      R    K L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_SULIL (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = -3
Query:  453 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 791
            R LL L      R    K L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_SULIK (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = -3
Query:  453 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 791
            R LL L      R    K L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_SULIA (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.27) GN=rps4p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 41/113 (36.28%), Postives = 63/113 (55.75%), Query Frame = -3
Query:  453 RDLLTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 791
            R LL L      R    K L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_METM7 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4p PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.477e-12
Identity = 39/92 (42.39%), Postives = 53/92 (57.61%), Query Frame = -3
Query:  471 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 746
            E   L   + RY  L E +  LD+VL+L +E+ LERRLQT+V+K G+AK+   AR  I   HI V  + V  PS++V V     IE+   SP
Sbjct:   69 EAVQLFNVLKRYAILVEQEPTLDHVLSLNIESILERRLQTMVYKKGLAKTAKQARQFIVHGHIAVNGKRVTSPSYLVSVAENDAIEYVPNSP 160          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_METM5 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4p PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.154e-12
Identity = 38/92 (41.30%), Postives = 54/92 (58.70%), Query Frame = -3
Query:  471 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 746
            E   L   + RY  L ES+  LD+VL+L +E+ LERRLQT+V++ G+AK+   AR  I   HI V  + V  P+++V V     IE+   SP
Sbjct:   69 EAVQLFNVLKRYAILVESEPTLDHVLSLNIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_PYRAE (30S ribosomal protein S4P OS=Pyrobaculum aerophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 36/89 (40.45%), Postives = 56/89 (62.92%), Query Frame = -3
Query:  516 LTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 782
            +T +E+ P  +        ++++ GF+E+   +LD +L+L V   LERRLQT+V++ G+AKSIHHAR LI   H+ V  + V  P F+V
Sbjct:   63 MTAEERAPLEM----PFKEKLYKMGFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTSPGFLV 147          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_METVS (30S ribosomal protein S4P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = -3
Query:  471 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 746
            E   L   + RY  L E +  LD++L+L +E+ LERRLQTLV++ G+AK+   AR LI   HI V  + V  PS++V V     I +   SP
Sbjct:   69 EAVQLFNVLKRYAILVEQEPTLDHILSLNIESILERRLQTLVYRKGLAKTAKQARQLIVHGHIAVNGRRVTSPSYLVSVSENNAIGYVPNSP 160          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_METTP (30S ribosomal protein S4P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 39/105 (37.14%), Postives = 62/105 (59.05%), Query Frame = -3
Query:  447 RRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGR 758
            R   E  A++ R+ R+G L++  + LD +L+L + + LERRLQT V++ G+A +I  AR  I   HI+V  Q V +PS++V+   +  I++   SP    G P R
Sbjct:   68 RADIEAAAVINRLSRFGILKDGAD-LDAILSLKITDILERRLQTQVYRQGLANTIRQARQFITHGHIQVAGQRVTVPSYLVKRGDEMTIDYYAGSPLAREGHPER 171          
The following BLAST results are available for this feature:
BLAST of CV884658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RS4_SULIN5.477e-1236.2830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIM5.477e-1236.2830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIL5.477e-1236.2830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIK5.477e-1236.2830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIA5.477e-1236.2830S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_METM75.477e-1242.3930S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_METM57.154e-1241.3030S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_PYRAE9.343e-1240.4530S ribosomal protein S4P OS=Pyrobaculum aerophilu... [more]
RS4_METVS9.343e-1241.3030S ribosomal protein S4P OS=Methanococcus vanniel... [more]
RS4_METTP9.343e-1237.1430S ribosomal protein S4P OS=Methanosaeta thermoph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884658 ID=CV884658; Name=CV884658; organism=Citrus sinensis; type=EST; length=793bp
TTTTTTTTTTGCCATAGGAACACATGTTTATGCTACGCTTTTCACACGTG
TGTGCGAGCACCGCAAAATATTCTAATCTCGTGTGAACAGCCCACGTGAA
GCCCAAGCACGAGTCGCACCCAATGAGAGAGCTGATTACAAACCCATCTA
AAGCCCAAGCTTATTCTCGATAAATGAAACTCTCCAGGAGCAGAAACTAC
CTATCTATCTATCTATCTATAGATATGCGACACAAAGCAAGCAAAACCTC
CTATTATAGCAAGAAAATTCGCAAACAAAAACATAAAACTTAGAGAAGAT
AAGTCCACTTGCAAAGTTCAGCCAGAATTCCTACTGTAACCATAAAAAAA
CTATCTGTTCACACAGGTAATTTATTCTTCATCCTCTTCATCTCCATCTC
CACCTGCGGCCTTCTTGGCAGCAGCCTTGATGTTCCTTCTCTTCACTCTT
CCAGGGCGGCCACCTCCGAATGGACTTGTCAGTGAGAATTCAATGTGCTT
CTGGGAATCAACCCTCACTACAAATGAGGGAATGTTGACAAGCTGCCTTC
CAACCCTAATGTGCCTCTGCCTGATGAGCACTCGAGCATGGTGAATTGAC
TTAGCCATGCCACTCTTGAACACAAGGGTCTGGAGACGACGCTCAAGAAA
GTTCTCCACAGTGAGGGCCAACACATAATCAAGCTTGTTCTGGCTCTCTT
CCAAGAAGCCGTACCTGTGCATCCTCCTGAGAAGAGCCTTACCCTCGAAA
ATACGACGTGGGTTCTTCTCATCGAGAGTGAGAAGATCCCTCG
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