CV884658

Overview
NameCV884658
Unique NameCV884658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length793
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CV884658_ssr201 microsatellite CV884658_ssr201:201..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_METLZ (30S ribosomal protein S4P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.343e-12
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = -3
Query:  438 PRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 761
            P+ I     L+  + RYG L      +D +L+L VE+ LERRLQT+V++ G+A+S   AR LI   HI +  Q V++PS++V +  +  I +  TS  G    G  +R
Sbjct:   69 PKTIARRDELVGTLQRYGLLGPDA-AMDNILSLKVEDILERRLQTIVYRKGLARSPKQARQLITHGHIAINGQRVSVPSYMVSIAEEAGIMYYATSSLGDEANGERQR 175          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.220e-11
Identity = 33/91 (36.26%), Postives = 56/91 (61.54%), Query Frame = -3
Query:  468 KALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 740
            + L+  ++R G ++     +D VL +  E  LERRLQT+V+K G+AK+I+ AR L+   HI +  + V  P ++V  + +K I+++  SPF
Sbjct:   71 RVLVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_THEAC (30S ribosomal protein S4P OS=Thermoplasma acidophilum GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = -3
Query:  471 LLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 734
            +++R++RY  L E+   LD VL+LTVEN L+RRLQT+VF+  +A S+  AR LI   HI V  + V +P  +V    +  I +   SP
Sbjct:   76 MIKRLNRYKLLSENAT-LDDVLSLTVENILDRRLQTIVFRKNLAISVRQARQLITHGHISVAGRRVTVPGMLVEAKDEDTIAYEENSP 162          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_PICTO (30S ribosomal protein S4P OS=Picrophilus torridus GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  468 NPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 764
            +P  I + + L+ ++ R   L E+   LD VL+L +E+ LERRL+TLV+K  +A ++  AR  I   HI+V  ++V IPSF+V    +  I ++ TSPF
Sbjct:   66 DPLAIKQFQLLIGKLSRLNLLGENAT-LDDVLSLNIEDILERRLETLVYKKNLALTMKQARQFITHGHIKVNDRVVTIPSFMVEKSMEDSITYNETSPF 163          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_ARCFU (30S ribosomal protein S4P OS=Archaeoglobus fulgidus GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.594e-11
Identity = 36/92 (39.13%), Postives = 59/92 (64.13%), Query Frame = -3
Query:  471 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 746
            + + +++++++ G L E+   LD +L L+VE+FLERRLQT+V++ G+A++I  AR  I   HI V  + V  PSF+V  + +  I F   SP
Sbjct:   75 KAQTVIKKLNKMGILPENAT-LDDILNLSVEDFLERRLQTMVYRQGLARTIKQARQFITHGHIAVDGRRVTSPSFIVTKELESKISFYRNSP 165          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_METMP (30S ribosomal protein S4P OS=Methanococcus maripaludis GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.081e-11
Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = -3
Query:  471 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 746
            E   L   + RY  L E +  LD+VL+L +E+ LERRLQT+VF+ G+AK+   AR  I   HI V  + V  P++++ V     IE+   SP
Sbjct:   69 EAVQLFNVLKRYAILIEEEPTLDHVLSLNIESILERRLQTIVFRKGLAKTPKQARQFIVHGHIAVNGKRVTAPAYLISVAENDAIEYVSNSP 160          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_THENV (30S ribosomal protein S4P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = -3
Query:  516 LTLDEKNPRRIFEGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 782
            +T +E+ P  +        ++++ GF+E+    LD VL+L V   LERRLQT+V++ G+AKSI+HAR LI   HI V  + V+ P F+V
Sbjct:   63 MTAEERAPLEL----PFKEKLYKMGFIEDPNVPLDRVLSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAVAGRRVSSPGFLV 147          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_METM6 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.718e-11
Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = -3
Query:  471 EGKALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 746
            E   L   + RY  L E +  LD+VL+L +E+ LERRLQT+V++ G+AK+   AR  I   HI V  + V  P+++V V     IE+   SP
Sbjct:   69 EAVQLFNVLKRYAILVEQEPTLDHVLSLDIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160          
BLAST of CV884658 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.637e-11
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = -3
Query:  492 RMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHI 725
            ++++ GF+E+    LD +L+L V   LERRLQT+V++ G+AKSI+HAR L+   H+ V  + V  P F+V  D +  I
Sbjct:   78 KLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHARQLVVHGHVAVAGRRVTSPGFLVPRDLEDKI 155          
The following BLAST results are available for this feature:
BLAST of CV884658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
RS4_METLZ9.343e-1237.0430S ribosomal protein S4P OS=Methanocorpusculum la... [more]
RS4_AERPE1.220e-1136.2630S ribosomal protein S4P OS=Aeropyrum pernix GN=r... [more]
RS4_THEAC1.594e-1142.0530S ribosomal protein S4P OS=Thermoplasma acidophi... [more]
RS4_PICTO1.594e-1139.3930S ribosomal protein S4P OS=Picrophilus torridus ... [more]
RS4_ARCFU1.594e-1139.1330S ribosomal protein S4P OS=Archaeoglobus fulgidu... [more]
RS4_METMP2.081e-1140.2230S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_THENV2.718e-1141.5730S ribosomal protein S4P OS=Thermoproteus neutrop... [more]
RS4_METM62.718e-1140.2230S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_PYRIL4.637e-1142.3130S ribosomal protein S4P OS=Pyrobaculum islandicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008G08_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884658 ID=CV884658; Name=CV884658; organism=Citrus sinensis; type=EST; length=793bp
TTTTTTTTTTGCCATAGGAACACATGTTTATGCTACGCTTTTCACACGTG
TGTGCGAGCACCGCAAAATATTCTAATCTCGTGTGAACAGCCCACGTGAA
GCCCAAGCACGAGTCGCACCCAATGAGAGAGCTGATTACAAACCCATCTA
AAGCCCAAGCTTATTCTCGATAAATGAAACTCTCCAGGAGCAGAAACTAC
CTATCTATCTATCTATCTATAGATATGCGACACAAAGCAAGCAAAACCTC
CTATTATAGCAAGAAAATTCGCAAACAAAAACATAAAACTTAGAGAAGAT
AAGTCCACTTGCAAAGTTCAGCCAGAATTCCTACTGTAACCATAAAAAAA
CTATCTGTTCACACAGGTAATTTATTCTTCATCCTCTTCATCTCCATCTC
CACCTGCGGCCTTCTTGGCAGCAGCCTTGATGTTCCTTCTCTTCACTCTT
CCAGGGCGGCCACCTCCGAATGGACTTGTCAGTGAGAATTCAATGTGCTT
CTGGGAATCAACCCTCACTACAAATGAGGGAATGTTGACAAGCTGCCTTC
CAACCCTAATGTGCCTCTGCCTGATGAGCACTCGAGCATGGTGAATTGAC
TTAGCCATGCCACTCTTGAACACAAGGGTCTGGAGACGACGCTCAAGAAA
GTTCTCCACAGTGAGGGCCAACACATAATCAAGCTTGTTCTGGCTCTCTT
CCAAGAAGCCGTACCTGTGCATCCTCCTGAGAAGAGCCTTACCCTCGAAA
ATACGACGTGGGTTCTTCTCATCGAGAGTGAGAAGATCCCTCG
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