CV884642

Overview
NameCV884642
Unique NameCV884642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: ATB13_ARATH (Homeobox-leucine zipper protein ATHB-13 OS=Arabidopsis thaliana GN=ATHB-13 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.652e-25
Identity = 62/118 (52.54%), Postives = 82/118 (69.49%), Query Frame = -1
Query:  452 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVSEQSKNHVSSEN 805
            QVK LEKNFE+ NKLEP+RK++LA  LGLQPRQIA+WFQNRRAR K+K+LE+DY  LK  +D L+ + + LQ  N+ L AE+  LK +  ++ E  +   E E   S +S N  SS+N
Sbjct:   93 QVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDTLKAENDLLQTHNQKLQAEIMGLKNR--EQTESINLNKETEGSCSNRSDN--SSDN 206          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: ATB20_ARATH (Homeobox-leucine zipper protein ATHB-20 OS=Arabidopsis thaliana GN=ATHB-20 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.464e-25
Identity = 61/117 (52.14%), Postives = 80/117 (68.38%), Query Frame = -1
Query:  455 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVSEQSKNHVSSE 805
            QVKALEK+FE+ NKLEP+RK++LA+ LG+QPRQIA+WFQNRRAR K+++LERDY  LK  +++L+ D  +L   N+ L AE+  LK K C E        EAEA  S       SS+
Sbjct:   95 QVKALEKSFELGNKLEPERKIQLAKALGMQPRQIAIWFQNRRARWKTRQLERDYDSLKKQFESLKSDNASLLAYNKKLLAEVMALKNKECNEGNIVKR--EAEASWSNNGSTENSSD 209          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.909e-25
Identity = 55/118 (46.61%), Postives = 79/118 (66.95%), Query Frame = -1
Query:  452 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVSEQSKNHVSSEN 805
            Q+K+LE  FE + +LEP +KV+LA ELGLQPRQ+A+WFQN+RAR KSK+LE +Y +L+ NYD L   + +L++E +AL +EL+ LK    ++ +E       +  V   S  H  SEN
Sbjct:   40 QIKSLEMMFESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQRLKEATQKKTQEEERQCSGDQAVVALSSTHHESEN 157          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSJ (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. japonica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.008e-24
Identity = 57/97 (58.76%), Postives = 76/97 (78.35%), Query Frame = -1
Query:  515 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETS 805
            QV  LE++FE +NKLEP+RK +LA +LGLQPRQ+AVWFQNRRAR K+K+LERD+  LKA++DALR D++ L Q+N  L +++  L  KL QE E T+
Sbjct:   85 QVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKL-QEKETTT 180          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX16_ORYSI (Homeobox-leucine zipper protein HOX16 OS=Oryza sativa subsp. indica GN=HOX16 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.008e-24
Identity = 57/97 (58.76%), Postives = 76/97 (78.35%), Query Frame = -1
Query:  515 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETS 805
            QV  LE++FE +NKLEP+RK +LA +LGLQPRQ+AVWFQNRRAR K+K+LERD+  LKA++DALR D++ L Q+N  L +++  L  KL QE E T+
Sbjct:   87 QVHLLERSFEEENKLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLHSQVMSLTEKL-QEKETTT 182          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HAT7_ARATH (Homeobox-leucine zipper protein HAT7 OS=Arabidopsis thaliana GN=HAT7 PE=2 SV=4)

HSP 1 Score: 112.464 bits (280), Expect = 2.933e-24
Identity = 60/120 (50.00%), Postives = 82/120 (68.33%), Query Frame = -1
Query:  446 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVSEQSKNHVSSENAN 805
            QV+ALEK+FE+ NKLEP+RK++LA+ LGLQPRQIA+WFQNRRAR K+K+LERDY  LK  +D L+ D ++L   N+ L AEL  LK    + + + S  ++ E   +  S N  +  N N
Sbjct:  123 QVRALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYDSLKKQFDVLKSDNDSLLAHNKKLHAELVALK----KHDRKESAKIKREFAEASWSNNGSTENNHN 238          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: ATB23_ARATH (Homeobox-leucine zipper protein ATHB-23 OS=Arabidopsis thaliana GN=ATHB-23 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.533e-24
Identity = 57/112 (50.89%), Postives = 82/112 (73.21%), Query Frame = -1
Query:  470 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVSEQSKN 805
            Q+KALEK+FE+ NKLE DRK++LA  LGLQPRQIA+WFQNRRAR K+K+LE+DY +LK  +++LR +   LQ +N+ L A++  LK++  +  E  +   E E   S++S+N
Sbjct:   79 QLKALEKDFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLEKDYDMLKRQFESLRDENEVLQTQNQKLQAQVMALKSR--EPIESINLNKETEGSCSDRSEN 188          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX21_ORYSJ (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. japonica GN=HOX21 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.114e-23
Identity = 60/119 (50.42%), Postives = 81/119 (68.07%), Query Frame = -1
Query:  470 VVQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAEL-----RELKAKLCQENEETSHAVEAEAPVSEQSKN 811
            V QV+ LEKNFE+ NKLEP+RK++LA  LGLQPRQ+A+WFQNRRAR K+K+LE+DY  LK   DA++ + + L   N+ L AE+     RE  ++L   N+ET      EA  S +S+N
Sbjct:  136 VEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQAEIVALKGREAASELINLNKET------EASCSNRSEN 248          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX21_ORYSI (Homeobox-leucine zipper protein HOX21 OS=Oryza sativa subsp. indica GN=HOX21 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.114e-23
Identity = 60/119 (50.42%), Postives = 81/119 (68.07%), Query Frame = -1
Query:  470 VVQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAEL-----RELKAKLCQENEETSHAVEAEAPVSEQSKN 811
            V QV+ LEKNFE+ NKLEP+RK++LA  LGLQPRQ+A+WFQNRRAR K+K+LE+DY  LK   DA++ + + L   N+ L AE+     RE  ++L   N+ET      EA  S +S+N
Sbjct:  130 VEQVRTLEKNFELGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALKRQLDAVKAENDALLNHNKKLQAEIVALKGREAASELINLNKET------EASCSNRSEN 242          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSJ (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. japonica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.901e-23
Identity = 50/103 (48.54%), Postives = 79/103 (76.70%), Query Frame = -1
Query:  497 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAE 805
            QV+ALE++FE DNKL+P+RK ++A +L L PRQ+AVWFQNRRAR K+K++ERD+  L++ +DALRL+ + L+++ +AL AE+ +L+ ++  +      AV A+
Sbjct:   73 QVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEIADLRDRVDGQMSVKLEAVAAD 175          
The following BLAST results are available for this feature:
BLAST of CV884642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
ATB13_ARATH2.652e-2552.54Homeobox-leucine zipper protein ATHB-13 OS=Arabido... [more]
ATB20_ARATH3.464e-2552.14Homeobox-leucine zipper protein ATHB-20 OS=Arabido... [more]
ATHB7_ARATH5.909e-2546.61Homeobox-leucine zipper protein ATHB-7 OS=Arabidop... [more]
HOX16_ORYSJ1.008e-2458.76Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HOX16_ORYSI1.008e-2458.76Homeobox-leucine zipper protein HOX16 OS=Oryza sat... [more]
HAT7_ARATH2.933e-2450.00Homeobox-leucine zipper protein HAT7 OS=Arabidopsi... [more]
ATB23_ARATH6.533e-2450.89Homeobox-leucine zipper protein ATHB-23 OS=Arabido... [more]
HOX21_ORYSJ1.114e-2350.42Homeobox-leucine zipper protein HOX21 OS=Oryza sat... [more]
HOX21_ORYSI1.114e-2350.42Homeobox-leucine zipper protein HOX21 OS=Oryza sat... [more]
HOX8_ORYSJ1.901e-2348.54Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884642 ID=CV884642; Name=CV884642; organism=Citrus sinensis; type=EST; length=811bp
CAAGAAGAGACATTATATGCCAGCTTCCTTGGTATTAGCTGTAAGTAATA
GTAGTTTTTACAATAAGTTCACTAATGACTAGTGATAATGAAGAACACTC
TTTTGCCATTGCCCATTGTCGAGAAAAACTAACTTAAAAAGCCCAAATTA
CAAAACTTGAAACTAAATTATTCCTTTTGAAGAACTTGAAAGTTCAGTAG
TTTCAGTGCCCAGTGAAGTACCACTGAAGAGTAGGAGCTTGATCAACTGA
AAAGATATTGCATGGATCCTCGGGATTAAACAACAGGCTTTGCTCTTCAA
CTTTCACAAGTTGAGGCTGCTGATAGACATTACTCAATATTGTTCTCGAA
TCAGAAAACTGAACCCAGTTCATTGATGGATGCGAAGAGGAAGAAGAGCC
AGTGAAAAGAGGGGAAAAAGAAGGTGGGGATGTCAATAGCTGAGCATTTG
CATTTTCACTTGAAACGTGGTTTTTGCTCTGTTCGGAAACAGGGGCCTCT
GCCTCAACAGCATGACTAGTCTCTTCATTTTCTTGGCAAAGCTTAGCTTT
CAATTCCCTTAACTCAGCAGTAAGGGCTTCATTTTCTTGTTGAAGATTAT
TGTAGTCAAGCCTTAAAGCATCATAGTTAGCTTTGAGAAGGCCATAGTCT
CTCTCCAATTCTTTGCTCTTCAAACGAGCGCGCCGGTTTTGGAACCAAAC
AGCAATTTGTCGCGGTTGCAGTCCCAATTCTTCAGCTAATTTAACTTTCC
TATCAGGCTCTAGCTTGTTATCGACCTCAAAATTCTTCTCCAAGGCCTTA
ACTTGAACCAC
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