CV884642

Overview
NameCV884642
Unique NameCV884642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX8_ORYSI (Homeobox-leucine zipper protein HOX8 OS=Oryza sativa subsp. indica GN=HOX8 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.901e-23
Identity = 50/103 (48.54%), Postives = 79/103 (76.70%), Query Frame = -1
Query:  497 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAE 805
            QV+ALE++FE DNKL+P+RK ++A +L L PRQ+AVWFQNRRAR K+K++ERD+  L++ +DALRL+ + L+++ +AL AE+ +L+ ++  +      AV A+
Sbjct:   49 QVRALERSFEADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFAALRSRHDALRLECDALRRDKDALAAEIADLRDRVDGQMSVKLEAVAAD 151          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSJ (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. japonica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.609e-22
Identity = 55/117 (47.01%), Postives = 77/117 (65.81%), Query Frame = -1
Query:  458 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL-CQENEETSHAVEAEAPVSEQSKNHVSS 805
            QV+ LE++FE +NKLEP+RK +LA  LG+ PRQ+AVWFQNRRAR K+K+LE D+  LKA YDAL  D++ L  +N+ L A++  L  KL  +E   +S  +   A   +Q   H  +
Sbjct:   94 QVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQDKETSPSSATITTAAQEVDQPDEHTEA 210          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX5_ORYSI (Homeobox-leucine zipper protein HOX5 OS=Oryza sativa subsp. indica GN=HOX5 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.609e-22
Identity = 55/117 (47.01%), Postives = 77/117 (65.81%), Query Frame = -1
Query:  458 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL-CQENEETSHAVEAEAPVSEQSKNHVSS 805
            QV+ LE++FE +NKLEP+RK +LA  LG+ PRQ+AVWFQNRRAR K+K+LE D+  LKA YDAL  D++ L  +N+ L A++  L  KL  +E   +S  +   A   +Q   H  +
Sbjct:   94 QVQMLERSFEEENKLEPERKTELARRLGMAPRQVAVWFQNRRARWKTKQLEHDFDRLKAAYDALAADHHALLSDNDRLRAQVISLTEKLQDKETSPSSATITTAAQEVDQPDEHTEA 210          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX22_ORYSJ (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica GN=HOX22 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.102e-22
Identity = 55/121 (45.45%), Postives = 76/121 (62.81%), Query Frame = -1
Query:  446 QVKALEKNFEVDN-KLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVSEQSKNHVSSENAN 805
            Q+++LE  F   + KLEP  K +LA ELGLQPRQ+A+WFQN+RAR +SK+LE DY  L++ YDAL     +L+QE  ALT +L EL+ +L +  E + +   A    S  S N   SE  +
Sbjct:   81 QIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLREREERSGNGGAATTAASSSSCNGSGSEEVD 201          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX22_ORYSI (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica GN=HOX22 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.102e-22
Identity = 55/121 (45.45%), Postives = 76/121 (62.81%), Query Frame = -1
Query:  446 QVKALEKNFEVDN-KLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVSEQSKNHVSSENAN 805
            Q+++LE  F   + KLEP  K +LA ELGLQPRQ+A+WFQN+RAR +SK+LE DY  L++ YDAL     +L+QE  ALT +L EL+ +L +  E + +   A    S  S N   SE  +
Sbjct:   81 QIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLREREERSGNGGAATTAASSSSCNGSGSEEVD 201          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: ATB12_ARATH (Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana GN=ATHB-12 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.779e-21
Identity = 46/98 (46.94%), Postives = 73/98 (74.49%), Query Frame = -1
Query:  512 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSH 805
            Q+K+LE  FE + +LEP +KV++A ELGLQPRQ+A+WFQN+RAR K+K+LE++Y  L+ANY+ L   +  +++E ++L +EL+ L  ++ +  EE  H
Sbjct:   38 QIKSLELIFESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQRLNEEMQRPKEEKHH 135          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX6_ORYSJ (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica GN=HOX6 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.176e-21
Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = -1
Query:  530 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQE 805
            Q+K+LE  F    KLEP +K++LA ELGLQPRQ+A+WFQN+RAR KSK+LER+Y  L+ +YDAL   Y +L++E  AL  +L +L A++ QE
Sbjct:   38 QIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLEKL-AEMLQE 128          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX6_ORYSI (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica GN=HOX6 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 5.176e-21
Identity = 50/92 (54.35%), Postives = 69/92 (75.00%), Query Frame = -1
Query:  530 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQE 805
            Q+K+LE  F    KLEP +K++LA ELGLQPRQ+A+WFQN+RAR KSK+LER+Y  L+ +YDAL   Y +L++E  AL  +L +L A++ QE
Sbjct:   38 QIKSLESMFATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLEKL-AEMLQE 128          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX24_ORYSI (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. indica GN=HOX24 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.506e-20
Identity = 54/122 (44.26%), Postives = 76/122 (62.30%), Query Frame = -1
Query:  443 QVKALEKNFEVDN-KLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVSEQSKNHVSSENANA 805
            QV++LE  F     KLEP  K +LA ELGLQPRQ+A+WFQN+RAR +SK++E DY  L+A YDAL     +L+QE  AL A++ EL+ KL  E ++ S + +      +      S  NA++
Sbjct:   73 QVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALAAQVDELRGKL-NERQDQSGSCDGGGAEGDDDDKRNSVMNASS 193          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX24_ORYSJ (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. japonica GN=HOX24 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.475e-20
Identity = 53/122 (43.44%), Postives = 75/122 (61.48%), Query Frame = -1
Query:  443 QVKALEKNFEVDN-KLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVSEQSKNHVSSENANA 805
            QV++LE  F     KLEP  K +LA ELGLQPRQ+A+WFQN+RAR +SK++E DY  L+A YDAL     +L+QE  AL  ++ EL+ KL  E ++ S + +      +      S  NA++
Sbjct:   72 QVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRAQYDALHARVESLRQEKLALADQVDELRGKL-NERQDQSGSCDGGGAEGDDDDKRNSVMNASS 192          
The following BLAST results are available for this feature:
BLAST of CV884642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
HOX8_ORYSI1.901e-2348.54Homeobox-leucine zipper protein HOX8 OS=Oryza sati... [more]
HOX5_ORYSJ1.609e-2247.01Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX5_ORYSI1.609e-2247.01Homeobox-leucine zipper protein HOX5 OS=Oryza sati... [more]
HOX22_ORYSJ2.102e-2245.45Homeobox-leucine zipper protein HOX22 OS=Oryza sat... [more]
HOX22_ORYSI2.102e-2245.45Homeobox-leucine zipper protein HOX22 OS=Oryza sat... [more]
ATB12_ARATH1.779e-2146.94Homeobox-leucine zipper protein ATHB-12 OS=Arabido... [more]
HOX6_ORYSJ5.176e-2154.35Homeobox-leucine zipper protein HOX6 OS=Oryza sati... [more]
HOX6_ORYSI5.176e-2154.35Homeobox-leucine zipper protein HOX6 OS=Oryza sati... [more]
HOX24_ORYSI1.506e-2044.26Homeobox-leucine zipper protein HOX24 OS=Oryza sat... [more]
HOX24_ORYSJ7.475e-2043.44Homeobox-leucine zipper protein HOX24 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884642 ID=CV884642; Name=CV884642; organism=Citrus sinensis; type=EST; length=811bp
CAAGAAGAGACATTATATGCCAGCTTCCTTGGTATTAGCTGTAAGTAATA
GTAGTTTTTACAATAAGTTCACTAATGACTAGTGATAATGAAGAACACTC
TTTTGCCATTGCCCATTGTCGAGAAAAACTAACTTAAAAAGCCCAAATTA
CAAAACTTGAAACTAAATTATTCCTTTTGAAGAACTTGAAAGTTCAGTAG
TTTCAGTGCCCAGTGAAGTACCACTGAAGAGTAGGAGCTTGATCAACTGA
AAAGATATTGCATGGATCCTCGGGATTAAACAACAGGCTTTGCTCTTCAA
CTTTCACAAGTTGAGGCTGCTGATAGACATTACTCAATATTGTTCTCGAA
TCAGAAAACTGAACCCAGTTCATTGATGGATGCGAAGAGGAAGAAGAGCC
AGTGAAAAGAGGGGAAAAAGAAGGTGGGGATGTCAATAGCTGAGCATTTG
CATTTTCACTTGAAACGTGGTTTTTGCTCTGTTCGGAAACAGGGGCCTCT
GCCTCAACAGCATGACTAGTCTCTTCATTTTCTTGGCAAAGCTTAGCTTT
CAATTCCCTTAACTCAGCAGTAAGGGCTTCATTTTCTTGTTGAAGATTAT
TGTAGTCAAGCCTTAAAGCATCATAGTTAGCTTTGAGAAGGCCATAGTCT
CTCTCCAATTCTTTGCTCTTCAAACGAGCGCGCCGGTTTTGGAACCAAAC
AGCAATTTGTCGCGGTTGCAGTCCCAATTCTTCAGCTAATTTAACTTTCC
TATCAGGCTCTAGCTTGTTATCGACCTCAAAATTCTTCTCCAAGGCCTTA
ACTTGAACCAC
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