CV884642

Overview
NameCV884642
Unique NameCV884642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Homology
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSJ (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. japonica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.762e-20
Identity = 55/127 (43.31%), Postives = 76/127 (59.84%), Query Frame = -1
Query:  470 VVQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELK---------AKLCQENEETS----HAVEAEAPVSEQSKN 811
            V QV+ LE++FE  NKLEP+RK +LA  LGLQPRQ+A+WFQNRRAR K+K+LE+D+  L+   DA R + + L   N  L AE+  LK            C++   +     +  E EA  S +S+N
Sbjct:  110 VEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHAEIVALKGGAAAAGGGGSSCRQEAASELINLNVKETEASCSNRSEN 236          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX23_ORYSI (Homeobox-leucine zipper protein HOX23 OS=Oryza sativa subsp. indica GN=HOX23 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.762e-20
Identity = 55/127 (43.31%), Postives = 76/127 (59.84%), Query Frame = -1
Query:  470 VVQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELK---------AKLCQENEETS----HAVEAEAPVSEQSKN 811
            V QV+ LE++FE  NKLEP+RK +LA  LGLQPRQ+A+WFQNRRAR K+K+LE+D+  L+   DA R + + L   N  L AE+  LK            C++   +     +  E EA  S +S+N
Sbjct:  110 VEQVRTLERSFESGNKLEPERKAQLARALGLQPRQVAIWFQNRRARWKTKQLEKDFDALRRQLDAARAENDALLSLNSKLHAEIVALKGGAAAAGGGGSSCRQEAASELINLNVKETEASCSNRSEN 236          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: ATB54_ARATH (Homeobox-leucine zipper protein ATHB-54 OS=Arabidopsis thaliana GN=ATHB-54 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.710e-19
Identity = 49/99 (49.49%), Postives = 71/99 (71.72%), Query Frame = -1
Query:  512 VQVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSH 808
            +Q++ LE++FE + +LEPDRK+ LAE+LGLQP Q+AVWFQNRRAR K+K+LE D   LKA+Y  L+ D++ L  +N+ L ++++ L       N  TSH
Sbjct:   75 IQLRLLEESFEEEKRLEPDRKLWLAEKLGLQPSQVAVWFQNRRARYKTKQLEHDCDSLKASYAKLKTDWDILFVQNQTLKSKVQFL-------NRLTSH 166          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: ATB51_ARATH (Putative homeobox-leucine zipper protein ATHB-51 OS=Arabidopsis thaliana GN=ATHB-51 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.137e-18
Identity = 54/124 (43.55%), Postives = 76/124 (61.29%), Query Frame = -1
Query:  443 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRE---LKAKLCQENEETSHAVEAEAPVSEQSKNHVSSENANA 805
            Q+ +LE++F+ + KL+ DRKVKL+ ELGLQPRQIAVWFQNRRAR K+K+LE+ Y  L+  YD +  +   L  E + L A LR+   +K ++     + S   E    +S     H  +EN NA
Sbjct:   86 QLASLERSFQEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQEYDVVSREKQMLHDEVKKLRALLRDQGLIKKQISAGTIKVS-GEEDTVEISSVVVAHPRTENMNA 208          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX25_ORYSJ (Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. japonica GN=HOX25 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.735e-17
Identity = 53/122 (43.44%), Postives = 78/122 (63.93%), Query Frame = -1
Query:  443 QVKALEKNFEVDN-KLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVSEQSKNHVSSENANA 805
            QV+ALE++FE +  KLEP+RK +LA  LG+ PRQ+AVWFQNRRAR K+K+LE D+  L+A +D L      L  +NE+L +++  L  KL    +  S    + AP +EQ+    + E+A +
Sbjct:   90 QVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRTALAADNESLRSQVILLTEKLQANGKSPS---PSPAP-AEQTAVPAAPESAKS 207          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX25_ORYSI (Homeobox-leucine zipper protein HOX25 OS=Oryza sativa subsp. indica GN=HOX25 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.319e-16
Identity = 53/122 (43.44%), Postives = 78/122 (63.93%), Query Frame = -1
Query:  443 QVKALEKNFEVDN-KLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVSEQSKNHVSSENANA 805
            QV+ALE++FE +  KLEP+RK +LA  LG+ PRQ+AVWFQNRRAR K+K+LE D+  L+A +D L      L  +NE+L +++  L  KL    +  S    + AP +EQ+    + E+A +
Sbjct:   30 QVRALERSFEEEKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRAALAADNESLRSQVILLTEKLQANGKSPS---PSPAP-AEQTAVPAAPESAKS 147          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: ATB53_ARATH (Homeobox-leucine zipper protein ATHB-53 OS=Arabidopsis thaliana GN=ATHB-53 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.548e-16
Identity = 50/119 (42.02%), Postives = 71/119 (59.66%), Query Frame = -1
Query:  449 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVSEQSKNHVSSENA 805
            QV  LE +F  ++KLE  RK K+A ELGL PRQ+AVWFQNRRAR K+K+LE +Y  LK ++D + L    L+ +   LT +L E ++++     + S  +E     S  S   V + NA
Sbjct:   79 QVNMLEYSFGNEHKLESGRKEKIAGELGLDPRQVAVWFQNRRARWKNKKLEEEYAKLKNHHDNVVLGQCQLESQILKLTEQLSEAQSEI----RKLSERLEEMPTNSSSSSLSVEANNA 193          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: ATB40_ARATH (Homeobox-leucine zipper protein ATHB-40 OS=Arabidopsis thaliana GN=ATHB-40 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.488e-15
Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = -1
Query:  485 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEETSHAVEAEAPVS 805
            QV  LE +F  ++KLE +RK +LA ELGL PRQ+AVWFQNRRAR K+K LE +Y  LK ++D + +D   L+ E   L  +L + + ++ Q   E      + +P+S
Sbjct:   64 QVNMLEMSFGDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNKLKNSHDNVVVDKCRLESEVIQLKEQLYDAEREI-QRLAERVEGGSSNSPIS 169          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: ATB22_ARATH (Homeobox-leucine zipper protein ATHB-22 OS=Arabidopsis thaliana GN=ATHB-22 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.250e-15
Identity = 45/101 (44.55%), Postives = 69/101 (68.32%), Query Frame = -1
Query:  527 QVKALEKNFEVD--------NKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQEN 805
            Q+K LE++F+ +         KL PDRK+KL++ELGLQPRQIAVWFQNR+AR K+K+LE         Y++LR +++ + +E E L  EL +LK+ + +++
Sbjct:   79 QLKFLERSFQEEIKLNPDRKMKLNPDRKMKLSKELGLQPRQIAVWFQNRKARWKNKQLEH-------LYESLRQEFDIVSREKELLQEELIQLKSMIREDS 172          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: ATB21_ARATH (Homeobox-leucine zipper protein ATHB-21 OS=Arabidopsis thaliana GN=ATHB-21 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.456e-15
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = -1
Query:  539 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 805
            QV+ LE +FE D+KLE +RK +LA ELGL PRQ+AVWFQNRRAR K+K +E +Y  LK  Y+   ++   L  E   L  +L E + ++
Sbjct:   69 QVRMLEISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTKLKNAYETTVVEKCRLDSEVIHLKEQLYEAEREI 157          
The following BLAST results are available for this feature:
BLAST of CV884642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
HOX23_ORYSJ9.762e-2043.31Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
HOX23_ORYSI9.762e-2043.31Homeobox-leucine zipper protein HOX23 OS=Oryza sat... [more]
ATB54_ARATH3.710e-1949.49Homeobox-leucine zipper protein ATHB-54 OS=Arabido... [more]
ATB51_ARATH9.137e-1843.55Putative homeobox-leucine zipper protein ATHB-51 O... [more]
HOX25_ORYSJ7.735e-1743.44Homeobox-leucine zipper protein HOX25 OS=Oryza sat... [more]
HOX25_ORYSI1.319e-1643.44Homeobox-leucine zipper protein HOX25 OS=Oryza sat... [more]
ATB53_ARATH6.548e-1642.02Homeobox-leucine zipper protein ATHB-53 OS=Arabido... [more]
ATB40_ARATH2.488e-1542.99Homeobox-leucine zipper protein ATHB-40 OS=Arabido... [more]
ATB22_ARATH3.250e-1544.55Homeobox-leucine zipper protein ATHB-22 OS=Arabido... [more]
ATB21_ARATH9.456e-1548.31Homeobox-leucine zipper protein ATHB-21 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884642 ID=CV884642; Name=CV884642; organism=Citrus sinensis; type=EST; length=811bp
CAAGAAGAGACATTATATGCCAGCTTCCTTGGTATTAGCTGTAAGTAATA
GTAGTTTTTACAATAAGTTCACTAATGACTAGTGATAATGAAGAACACTC
TTTTGCCATTGCCCATTGTCGAGAAAAACTAACTTAAAAAGCCCAAATTA
CAAAACTTGAAACTAAATTATTCCTTTTGAAGAACTTGAAAGTTCAGTAG
TTTCAGTGCCCAGTGAAGTACCACTGAAGAGTAGGAGCTTGATCAACTGA
AAAGATATTGCATGGATCCTCGGGATTAAACAACAGGCTTTGCTCTTCAA
CTTTCACAAGTTGAGGCTGCTGATAGACATTACTCAATATTGTTCTCGAA
TCAGAAAACTGAACCCAGTTCATTGATGGATGCGAAGAGGAAGAAGAGCC
AGTGAAAAGAGGGGAAAAAGAAGGTGGGGATGTCAATAGCTGAGCATTTG
CATTTTCACTTGAAACGTGGTTTTTGCTCTGTTCGGAAACAGGGGCCTCT
GCCTCAACAGCATGACTAGTCTCTTCATTTTCTTGGCAAAGCTTAGCTTT
CAATTCCCTTAACTCAGCAGTAAGGGCTTCATTTTCTTGTTGAAGATTAT
TGTAGTCAAGCCTTAAAGCATCATAGTTAGCTTTGAGAAGGCCATAGTCT
CTCTCCAATTCTTTGCTCTTCAAACGAGCGCGCCGGTTTTGGAACCAAAC
AGCAATTTGTCGCGGTTGCAGTCCCAATTCTTCAGCTAATTTAACTTTCC
TATCAGGCTCTAGCTTGTTATCGACCTCAAAATTCTTCTCCAAGGCCTTA
ACTTGAACCAC
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