CV884642

Overview
NameCV884642
Unique NameCV884642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSJ (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. japonica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.751e-14
Identity = 49/95 (51.58%), Postives = 59/95 (62.11%), Query Frame = -1
Query:  521 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEE 805
            QV+ LE +F  + KLE  RKV LA ELGL P+Q+AVWFQNRRAR KSK LE ++  LK  +DA  L   +L  ENE L      LK +L    EE
Sbjct:   70 QVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHL--ENEVL-----RLKERLVVAEEE 157          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX14_ORYSI (Homeobox-leucine zipper protein HOX14 OS=Oryza sativa subsp. indica GN=HOX14 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.751e-14
Identity = 49/95 (51.58%), Postives = 59/95 (62.11%), Query Frame = -1
Query:  521 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEE 805
            QV+ LE +F  + KLE  RKV LA ELGL P+Q+AVWFQNRRAR KSK LE ++  LK  +DA  L   +L  ENE L      LK +L    EE
Sbjct:   70 QVEMLELSFREERKLETGRKVHLASELGLDPKQVAVWFQNRRARHKSKLLEEEFSKLKHAHDAAILHKCHL--ENEVL-----RLKERLVVAEEE 157          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSJ (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. japonica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.693e-14
Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = -1
Query:  521 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEE 805
            Q + LE +F+ + KLE  RKV+LA ELGL  +Q+AVWFQNRRAR KSK +E ++  L++ +DA+ L       +N  L  EL +LK +L    EE
Sbjct:   69 QARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVL-------QNCHLETELLKLKERLADVEEE 156          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX12_ORYSI (Homeobox-leucine zipper protein HOX12 OS=Oryza sativa subsp. indica GN=HOX12 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.693e-14
Identity = 44/95 (46.32%), Postives = 61/95 (64.21%), Query Frame = -1
Query:  521 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKLCQENEE 805
            Q + LE +F+ + KLE  RKV+LA ELGL  +Q+AVWFQNRRAR KSK +E ++  L++ +DA+ L       +N  L  EL +LK +L    EE
Sbjct:   69 QARFLEMSFKKERKLETPRKVQLAAELGLDAKQVAVWFQNRRARHKSKLMEEEFAKLRSAHDAVVL-------QNCHLETELLKLKERLADVEEE 156          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: ATB52_ARATH (Homeobox-leucine zipper protein ATHB-52 OS=Arabidopsis thaliana GN=ATHB-52 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.783e-13
Identity = 38/89 (42.70%), Postives = 60/89 (67.42%), Query Frame = -1
Query:  539 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKAKL 805
            QV+ LEK F ++ KLEPD K++L+ +LGL  RQ+AVWFQN+RAR K++ LE  +  L++ ++A   D   L+ + + L  EL+  + +L
Sbjct:   19 QVRQLEKCFTMNKKLEPDLKLQLSNQLGLPQRQVAVWFQNKRARFKTQSLEVQHCTLQSKHEAALSDKAKLEHQVQFLQDELKRARNQL 107          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSJ (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. japonica GN=HOX1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11
Identity = 45/106 (42.45%), Postives = 54/106 (50.94%), Query Frame = -1
Query:  491 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKA-KLCQENEETSHAVEAEAP 805
            Q   LE  F+  N L P +K  LA +L L+PRQ+ VWFQNRRAR K K+ E D  LLK   +        L  EN  L  EL+EL+A KL        H   A  P
Sbjct:  165 QAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCE-------TLTDENRRLHRELQELRALKLATAAAAPHHLYGARVP 263          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX1_ORYSI (Homeobox-leucine zipper protein HOX1 OS=Oryza sativa subsp. indica GN=HOX1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11
Identity = 45/106 (42.45%), Postives = 54/106 (50.94%), Query Frame = -1
Query:  491 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKA-KLCQENEETSHAVEAEAP 805
            Q   LE  F+  N L P +K  LA +L L+PRQ+ VWFQNRRAR K K+ E D  LLK   +        L  EN  L  EL+EL+A KL        H   A  P
Sbjct:  165 QAAVLEDTFKEHNTLNPKQKAALARQLNLKPRQVEVWFQNRRARTKLKQTEVDCELLKRCCE-------TLTDENRRLHRELQELRALKLATAAAAPHHLYGARVP 263          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSJ (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. japonica GN=HOX28 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 42/87 (48.28%), Postives = 51/87 (58.62%), Query Frame = -1
Query:  545 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKA 805
            Q   LE+ F+  + L P +KV LA+ L L+PRQ+ VWFQNRRAR K K+ E D   LK   D L  D   L +E     AELR LKA
Sbjct:  102 QAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKE----LAELRALKA 184          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX28_ORYSI (Homeobox-leucine zipper protein HOX28 OS=Oryza sativa subsp. indica GN=HOX28 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.856e-11
Identity = 42/87 (48.28%), Postives = 51/87 (58.62%), Query Frame = -1
Query:  545 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKA 805
            Q   LE+ F+  + L P +KV LA+ L L+PRQ+ VWFQNRRAR K K+ E D   LK   D L  D   L +E     AELR LKA
Sbjct:  102 QAAVLEECFKTHHTLTPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKE----LAELRALKA 184          
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSJ (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. japonica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.342e-11
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = -1
Query:  545 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKA 805
            Q   LE+ F+  + L P +KV LA  LGL+PRQ+ VWFQNRRAR K K+ E D   LK   + L  +   L++E     A+LR LKA
Sbjct:  123 QAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKE----LADLRALKA 205          
The following BLAST results are available for this feature:
BLAST of CV884642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
HOX14_ORYSJ2.751e-1451.58Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
HOX14_ORYSI2.751e-1451.58Homeobox-leucine zipper protein HOX14 OS=Oryza sat... [more]
HOX12_ORYSJ4.693e-1446.32Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]
HOX12_ORYSI4.693e-1446.32Homeobox-leucine zipper protein HOX12 OS=Oryza sat... [more]
ATB52_ARATH1.783e-1342.70Homeobox-leucine zipper protein ATHB-52 OS=Arabido... [more]
HOX1_ORYSJ1.278e-1142.45Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX1_ORYSI1.278e-1142.45Homeobox-leucine zipper protein HOX1 OS=Oryza sati... [more]
HOX28_ORYSJ4.856e-1148.28Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX28_ORYSI4.856e-1148.28Homeobox-leucine zipper protein HOX28 OS=Oryza sat... [more]
HOX2_ORYSJ6.342e-1145.98Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884642 ID=CV884642; Name=CV884642; organism=Citrus sinensis; type=EST; length=811bp
CAAGAAGAGACATTATATGCCAGCTTCCTTGGTATTAGCTGTAAGTAATA
GTAGTTTTTACAATAAGTTCACTAATGACTAGTGATAATGAAGAACACTC
TTTTGCCATTGCCCATTGTCGAGAAAAACTAACTTAAAAAGCCCAAATTA
CAAAACTTGAAACTAAATTATTCCTTTTGAAGAACTTGAAAGTTCAGTAG
TTTCAGTGCCCAGTGAAGTACCACTGAAGAGTAGGAGCTTGATCAACTGA
AAAGATATTGCATGGATCCTCGGGATTAAACAACAGGCTTTGCTCTTCAA
CTTTCACAAGTTGAGGCTGCTGATAGACATTACTCAATATTGTTCTCGAA
TCAGAAAACTGAACCCAGTTCATTGATGGATGCGAAGAGGAAGAAGAGCC
AGTGAAAAGAGGGGAAAAAGAAGGTGGGGATGTCAATAGCTGAGCATTTG
CATTTTCACTTGAAACGTGGTTTTTGCTCTGTTCGGAAACAGGGGCCTCT
GCCTCAACAGCATGACTAGTCTCTTCATTTTCTTGGCAAAGCTTAGCTTT
CAATTCCCTTAACTCAGCAGTAAGGGCTTCATTTTCTTGTTGAAGATTAT
TGTAGTCAAGCCTTAAAGCATCATAGTTAGCTTTGAGAAGGCCATAGTCT
CTCTCCAATTCTTTGCTCTTCAAACGAGCGCGCCGGTTTTGGAACCAAAC
AGCAATTTGTCGCGGTTGCAGTCCCAATTCTTCAGCTAATTTAACTTTCC
TATCAGGCTCTAGCTTGTTATCGACCTCAAAATTCTTCTCCAAGGCCTTA
ACTTGAACCAC
back to top