CV884642

Overview
NameCV884642
Unique NameCV884642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HOX2_ORYSI (Homeobox-leucine zipper protein HOX2 OS=Oryza sativa subsp. indica GN=HOX2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.342e-11
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = -1 
Query:  545 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKA 805
            Q   LE+ F+  + L P +KV LA  LGL+PRQ+ VWFQNRRAR K K+ E D   LK   + L  +   L++E     A+LR LKA
Sbjct:  123 QAAVLEECFKTHSTLNPKQKVALANRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKE----LADLRALKA 205
[Close]
BLAST of CV884642 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.284e-11
Identity = 42/92 (45.65%), Postives = 53/92 (57.61%), Query Frame = -1 
Query:  533 QVKALEKNFEVDNKLEPDRKVKLAEELGLQPRQIAVWFQNRRARLKSKELERDYGLLKANYDALRLDYNNLQQENEALTAELRELKA-KLCQ 805
            Q   LE NF++ + L P +K  LA +L L+PRQ+ VWFQNRRAR K K+ E D   LK   +        L  EN  L  EL++LKA KL Q
Sbjct:  134 QSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCE-------TLTDENRRLQKELQDLKALKLSQ 218
The following BLAST results are available for this feature:
BLAST of CV884642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
HOX2_ORYSI6.342e-1145.98Homeobox-leucine zipper protein HOX2 OS=Oryza sati... [more]
HAT22_ARATH8.284e-1145.65Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884642 ID=CV884642; Name=CV884642; organism=Citrus sinensis; type=EST; length=811bp
CAAGAAGAGACATTATATGCCAGCTTCCTTGGTATTAGCTGTAAGTAATA
GTAGTTTTTACAATAAGTTCACTAATGACTAGTGATAATGAAGAACACTC
TTTTGCCATTGCCCATTGTCGAGAAAAACTAACTTAAAAAGCCCAAATTA
CAAAACTTGAAACTAAATTATTCCTTTTGAAGAACTTGAAAGTTCAGTAG
TTTCAGTGCCCAGTGAAGTACCACTGAAGAGTAGGAGCTTGATCAACTGA
AAAGATATTGCATGGATCCTCGGGATTAAACAACAGGCTTTGCTCTTCAA
CTTTCACAAGTTGAGGCTGCTGATAGACATTACTCAATATTGTTCTCGAA
TCAGAAAACTGAACCCAGTTCATTGATGGATGCGAAGAGGAAGAAGAGCC
AGTGAAAAGAGGGGAAAAAGAAGGTGGGGATGTCAATAGCTGAGCATTTG
CATTTTCACTTGAAACGTGGTTTTTGCTCTGTTCGGAAACAGGGGCCTCT
GCCTCAACAGCATGACTAGTCTCTTCATTTTCTTGGCAAAGCTTAGCTTT
CAATTCCCTTAACTCAGCAGTAAGGGCTTCATTTTCTTGTTGAAGATTAT
TGTAGTCAAGCCTTAAAGCATCATAGTTAGCTTTGAGAAGGCCATAGTCT
CTCTCCAATTCTTTGCTCTTCAAACGAGCGCGCCGGTTTTGGAACCAAAC
AGCAATTTGTCGCGGTTGCAGTCCCAATTCTTCAGCTAATTTAACTTTCC
TATCAGGCTCTAGCTTGTTATCGACCTCAAAATTCTTCTCCAAGGCCTTA
ACTTGAACCAC
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