CV884641

Overview
NameCV884641
Unique NameCV884641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_ECO45 (Divalent-cation tolerance protein cutA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  213 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 545
            ++  S    S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    2 LDEKSSNTTSVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_ECO24 (Divalent-cation tolerance protein cutA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=cutA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  213 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 545
            ++  S    S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    2 LDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_ECO81 (Divalent-cation tolerance protein cutA OS=Escherichia coli O81 (strain ED1a) GN=cutA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.329e-18
Identity = 40/111 (36.04%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  213 MEGNSKTVPSIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 545
            ++  S    S+VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + + E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    2 LDEKSSNTTSVVVLCTAPDEATAQDLAAKVLAEKLAACATLIPGATSLYYWEGKLEQEYEVQMILKTTVSHQQAMLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 112          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_DANRE (Protein CutA homolog OS=Danio rerio GN=cuta PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.329e-18
Identity = 39/101 (38.61%), Postives = 64/101 (63.37%), Query Frame = -3
Query:  210 VVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTRD 512
            ++ V  P ++  + +   I++ +LAACVN  P   ++Y WKGEI+   E LL+++T+ SL++ L  ++ A H YD+PE+I  PI  GSQ YL+W+  +  D
Sbjct:   49 LLLVNCPTEQTARDIGRIIMEKRLAACVNIFPRTATMYYWKGEIRDATEILLLVRTKTSLVQRLMTYITAIHPYDIPEIITFPINDGSQHYLKWIAEAVTD 149          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_CITK8 (Divalent-cation tolerance protein cutA OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=cutA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.750e-17
Identity = 41/114 (35.96%), Postives = 69/114 (60.53%), Query Frame = -3
Query:  213 MEGNSKTVP---SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 545
            ++ NS+ +    ++VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L E +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:    2 LDDNSQDISIPEAVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_SALTY (Divalent-cation tolerance protein cutA OS=Salmonella typhimurium GN=cutA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.382e-16
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  213 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 518
            ++VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_SALTI (Divalent-cation tolerance protein cutA OS=Salmonella typhi GN=cutA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.382e-16
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  213 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 518
            ++VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_SALSV (Divalent-cation tolerance protein cutA OS=Salmonella schwarzengrund (strain CVM19633) GN=cutA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.382e-16
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  213 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 518
            ++VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_SALPK (Divalent-cation tolerance protein cutA OS=Salmonella paratyphi A (strain AKU_12601) GN=cutA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.382e-16
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  213 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 518
            ++VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115          
BLAST of CV884641 vs. ExPASy Swiss-Prot
Match: CUTA_SALPA (Divalent-cation tolerance protein cutA OS=Salmonella paratyphi A GN=cutA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.382e-16
Identity = 38/102 (37.25%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  213 SIVVYVTVPNKEAGKKLAESIVKAKLAACVNRVPGIESVYEWKGEIQTDAEELLIIKTRQSLLETLTEHVKANHEYDVPEVIALPITGGSQPYLEWLKSSTR 518
            ++VV  T P++   + LA  ++  KLAAC   +PG  S+Y W+G+++ + E  +I+KT  S  + L + +K++H Y  PE++ LP+T G   YL WL +S R
Sbjct:   14 AVVVLCTAPDEATAQDLAAKVLAEKLAACATLLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHGDTDYLSWLNASLR 115          
The following BLAST results are available for this feature:
BLAST of CV884641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
CUTA_ECO454.297e-1836.94Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECO244.297e-1836.94Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_ECO817.329e-1836.04Divalent-cation tolerance protein cutA OS=Escheric... [more]
CUTA_DANRE7.329e-1838.61Protein CutA homolog OS=Danio rerio GN=cuta PE=2 S... [more]
CUTA_CITK84.750e-1735.96Divalent-cation tolerance protein cutA OS=Citrobac... [more]
CUTA_SALTY1.382e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]
CUTA_SALTI1.382e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]
CUTA_SALSV1.382e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]
CUTA_SALPK1.382e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]
CUTA_SALPA1.382e-1637.25Divalent-cation tolerance protein cutA OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008F10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884641 ID=CV884641; Name=CV884641; organism=Citrus sinensis; type=EST; length=622bp
TGGTAGAATAGCATGTTTTCGGAAAACTAAGGGCATACATCATCTCACAA
GTTTTGCCAACATAGAATTCATCACGATATGTTCCAGTTCGATTATAAAA
TATACAAACTTTATTCTAGTAGTACCATCTGCACACTCAACCCAACAACA
AAAGGAGCTTATCAGTTACAGCGTCCACACACTACATCACACTACATCCG
CGGGAGTCAGTCCCTTGTACTGCTTTTTAGCCACTCTAGGTATGGCTGGC
TGCCACCAGTGATGGGCAAGGCAATTACTTCTGGCACATCATATTCATGA
TTTGCCTTGACATGCTCTGTCAGAGTTTCCAAAAGGGATTGCCTAGTCTT
TATAATAAGAAGTTCTTCAGCATCTGTCTGGATCTCTCCCTTCCACTCGT
AAACAGATTCAATACCTGGCACTCGATTCACACATGCTGCAAGTTTTGCT
TTCACTATGCTTTCAGCCAGTTTCTTTCCTGCTTCTTTGTTAGGAACGGT
GACATAAACTACAATACTTGGTACAGTTTTGCTGTTGCCTTCCATTTTGA
TCGTGTTACTACTCGCGCGAGCTTGGTTACTAAACTTTGATCCGAAAAAC
GGGAGAGAAGGAGCGGAACCCT
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