CV884589

Overview
NameCV884589
Unique NameCV884589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884589 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.531e-19
Identity = 65/218 (29.82%), Postives = 108/218 (49.54%), Query Frame = 2
Query:    2 LFLSSEEPHLFPKLPPSL---RDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQS---MRMNYYPPCPQPG----KVMGLTPHSDSVALTILLQINEAEGLQIK-KDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEVGPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSLLDYMRI 622
            L L++ + H F      +   R  L+ Y   +  +A  ++  MA+ L I+ + V        QS    R+N+YP CP+       ++G   H+D   ++IL + N   G QI  +DG W  V P  ++F +N+GD L+V+TNG + S+ HR + N    RLS+  F       ++ P PSL+  K  +L++  T  E+  + +   L +  L +Y RI
Sbjct:  109 LLLTTNQDHNFSLYGEDIDKFRGLLKDYKCAMRNMACEILDLMAEGLKIQPKNVFSKLVMDKQSDCLFRVNHYPACPELAINGENLIGFGEHTDPQIISIL-RSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGIDPRLSMIYFCGPPLSEKIAPLPSLMKGK-ESLYKEFTWFEYKSSTYGSRLADNRLGNYERI 324          
BLAST of CV884589 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.455e-18
Identity = 54/199 (27.14%), Postives = 104/199 (52.26%), Query Frame = 2
Query:   29 LFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFF---ENGLQSMRMNYYPPCPQPGKVM---GLTPHSDSVALTILLQINEAEGLQI-KKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEVGPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSL 604
            +F + P   R+++E Y  E+  ++  ++  +A+ L I+  +        E     +R+N+YP   +  + M   G   H+D   +++L   N A GLQI  KDG W  V P  ++F +N+GD L+V+TNG + S++HR + ++ + R+S+  F       ++ P P L+ E+   L++  T  ++  + +  +L +  L
Sbjct:  129 VFRQTPQIFRESVEEYMKEIKEVSYKVLEMVAEELGIEPRDTLSKMLRDEKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDPQIISVLRSNNTA-GLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTRRSRISMIYFGGPPLSQKIAPLPCLVPEQDDWLYKEFTWSQYKSSAYKSKLGDYRL 326          
BLAST of CV884589 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.043e-16
Identity = 55/198 (27.78%), Postives = 102/198 (51.52%), Query Frame = 2
Query:   29 LFPKLPPSLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQS---MRMNYYPPCPQPG--KVMGLTPHSDSVALTILLQINEAEGLQI-KKDGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEVGPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSL 604
            +F   P   R+ +E Y  E+  ++   +  + + L I+ +E         +S   +RMN+YP   +    + +G   H+D   ++ LL+ N+ EGLQI  KDG W  V P  ++F V +GD L+V+TNG + S++HR V N+++ R+S+  F       ++ P   L+ ++   L+   T  ++  + +  +L +  L
Sbjct:  125 IFRHTPAIFREAVEEYIKEMKRMSSKFLEMVEEELKIEPKEKLSRLVKVKESDSCLRMNHYPEKEETPVKEEIGFGEHTDPQLIS-LLRSNDTEGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCLYNEFTWSQYKLSAYKTKLGDYRL 321          
BLAST of CV884589 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.779e-16
Identity = 59/205 (28.78%), Postives = 100/205 (48.78%), Query Frame = 2
Query:   74 YSTEVNALAMNLISRMAKVLHIKDEEVREFF---ENGLQSMRMNYYPPCPQ-------PGKV-------MGLTPHSDSVALTILLQINEAEGLQIKKD-GKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEVGPAPSLITEKTPALFRRVTTEEFLKAVFSRELHEKSLLDYMRIEHSQ 634
            Y   V  L   ++   A+ L + D+         E+    +R+N+YPP  +       P K+       +G   HSD   LTIL + N   GLQI    G W PV P P+ F V +GD L+V+TNG + S+ HR + N+ + R+S+  F     +  + P   ++T  +P L+R  T  ++ +A ++  L + + LD  +++  +
Sbjct:  135 YIKAVKDLTCEILELAAEGLWVPDKSSLSKIIKDEHSDSLLRINHYPPVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQILTIL-RSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNTTKPRMSMMYFAAPPLNWLISPLSKMVTAHSPCLYRPFTWAQYKQAAYALRLGD-TRLDQFKVQKQE 337          
BLAST of CV884589 vs. ExPASy Swiss-Prot
Match: ISP7_SCHPO (Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe GN=isp7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.079e-13
Identity = 55/178 (30.90%), Postives = 87/178 (48.88%), Query Frame = 2
Query:   50 SLRDTLEVYSTEVNALAMNLISRMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPGKVMGLTPHSDSVALTILLQINEAEGLQIKK--DGKWFPVRPLPNAFIVNIGDMLEVITNGVYPSIEHRAVVNSEQERLSIATFHLVKYDGEVGPAPSLITEKTPALFRRVTTEEFLKAVF 577
            S R  L  Y  ++ A A +++S +A+ L +  +   EF  +   S+R+  YP  P     +G+  H+D+ ALT++ Q N  +GL+I       +  V P P A I N+GD++ ++TN  Y S  HR   NS  +R +I  F     D  V P P L     P+    +  E+ L+  F
Sbjct:  214 SFRKALVKYHDQMLAFANHVMSLLAESLELSPDAFDEFCSDPTTSIRLLRYPSSPNR---LGVQEHTDADALTLMSQDN-VKGLEILDPVSNCFLSVSPAPGALIANLGDIMAILTNNRYKSSMHRVCNNSGSDRYTIPFFLQGNIDYVVAPLPGL----GPSTAEPIAVEDLLRDHF 383          
The following BLAST results are available for this feature:
BLAST of CV884589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G2OX1_PEA8.531e-1929.82Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
G2OX2_ARATH1.455e-1827.14Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G2OX3_ARATH1.043e-1627.78Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G2OX2_PEA1.779e-1628.78Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]
ISP7_SCHPO1.079e-1330.90Sexual differentiation process protein isp7 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008D06_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T7_D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884589 ID=CV884589; Name=CV884589; organism=Citrus sinensis; type=EST; length=827bp
ACTCTTCCTGTCCTCTGAGGAACCCCACTTGTTTCCTAAGCTCCCTCCTT
CTCTCAGGGATACGTTGGAAGTTTACTCAACGGAAGTAAATGCTCTAGCG
ATGAATTTAATATCGAGAATGGCAAAAGTCTTACATATCAAGGATGAGGA
AGTGAGAGAATTCTTCGAAAATGGATTGCAATCAATGAGGATGAACTATT
ATCCTCCATGTCCTCAACCGGGGAAAGTTATGGGCCTTACACCCCATTCT
GATAGCGTTGCACTTACCATTCTCCTACAAATCAATGAAGCTGAAGGTCT
CCAGATTAAGAAGGATGGAAAGTGGTTTCCTGTTCGGCCGCTGCCAAATG
CTTTTATTGTCAACATTGGAGACATGCTGGAGGTAATAACGAATGGAGTA
TACCCTAGCATTGAGCATCGTGCAGTAGTAAACTCTGAGCAAGAAAGACT
CTCCATTGCCACTTTTCACTTGGTGAAATATGATGGTGAAGTAGGTCCAG
CACCCAGTTTGATCACTGAGAAAACACCAGCATTGTTCAGAAGAGTGACA
ACTGAAGAGTTCCTCAAGGCCGTCTTCTCTCGTGAGCTTCACGAAAAATC
TCTTTTGGATTACATGAGAATAGAACACAGTCAGGTCTAAGGCCAGTTTA
TTTGAGTTGTGAAAGAGTGAAAGATCTAGTCAAAAAACATCAAATGACAG
GTGCTCTTAAGATCGTGTCAGTATTAGAAAGAAGAAATAAGTTCTACAAA
AACAGTAAGAAGACTGGTAATCCCATGGTCATCGTGTTGATTATGTTTTA
ATGTAACTCAGATTATGTGAAATAAAG
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