CV884566

Overview
NameCV884566
Unique NameCV884566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 4.885e-34
Identity = 73/150 (48.67%), Postives = 97/150 (64.67%), Query Frame = 3
Query:  192 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 641
            KAV  +      +G +HF+ +GD    + G++  L++G HGFH+H +GD    C S G HFNP  K HGGP+D  RH GDLGN+    +G A ++IVD   LI L G  SIIGR++V+H+K DDLG+ GN  S K GNAG  +ACGVIG+
Sbjct:    4 KAVCVLKGDGPVQGTIHFEAKGD-KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVD--PLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGSCLACGVIGI 150          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODE_ONCVO (Extracellular superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-4 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.380e-34
Identity = 78/156 (50.00%), Postives = 100/156 (64.10%), Query Frame = 3
Query:  192 KAVAYVISKWGPKGILHFKQEGDGP-TTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGK-VGNY--HSKKNGNAGDKIACGVIGLQA 647
            +AVA +    G  GI++F+Q   G  TTI G++  L+ G HGFH+H YGD  + C S GDH+NPF K HGGP D I+H GDLGNI  G +G A++ I      I L GP S+IG S+V+H   DDLG+  GN    S K GNAG ++ACGVIG+ A
Sbjct:   46 RAVAVLRGDAGVSGIIYFQQGSGGSITTISGSVSGLTPGLHGFHVHQYGDQTNGCTSAGDHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYINSYD--IKLRGPLSVIGHSLVVHANTDDLGQGTGNMREESLKTGNAGSRLACGVIGIAA 199          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC_SHEEP (Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.421e-33
Identity = 72/150 (48.00%), Postives = 97/150 (64.67%), Query Frame = 3
Query:  192 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 641
            KAV  +      +G + F+ +GD    + G++  L++G HGFH+H +GD    C S G HFNP  K HGGP+D  RH GDLGN+    +G A ++IVD   LI L G  SIIGR++V+H+K DDLG+ GN  S K GNAG ++ACGVIG+
Sbjct:    4 KAVCVLKGDGPVQGTIRFEAKGD-KVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVD--PLISLSGEYSIIGRTMVVHEKPDDLGRGGNEESTKTGNAGGRLACGVIGI 150          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC_CEREL (Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 1.856e-33
Identity = 71/150 (47.33%), Postives = 98/150 (65.33%), Query Frame = 3
Query:  192 KAVAYVISKWGPKGILHFKQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 641
            KAV  +      +G + F+ +G     + G++  L++G HGFH+H +GD    C S G HFNP  K HGGP+D  RH GDLGN+    +G AK++IVD   LI L G +SIIGR++V+H+K DDLG+ GN  S K GNA +++ACGVIG+
Sbjct:    4 KAVCVLKGDGPVQGTIRFEAKGH-TVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAKVDIVD--SLISLSGEHSIIGRTMVVHEKPDDLGRGGNEESTKTGNARNRLACGVIGI 150          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.856e-33
Identity = 73/152 (48.03%), Postives = 94/152 (61.84%), Query Frame = 3
Query:  189 VKAVAYVISKWGPKGILHFKQE-GDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 641
            VKAV  +      KG +HF+Q+    P  + G +  L++G HGFH+H +GD  + C S G HFNP+   HG P D  RH GDLGNI    DG  K+ I D  KLI L G NSI+GR++V+H   DDLGK G+  SK  GNAG ++ CGVIG+
Sbjct:    3 VKAVCVI--NGDVKGTVHFEQQDAKSPVLVTGEVNGLAKGLHGFHVHEFGDNTNGCTSAGPHFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISD--KLITLFGENSIVGRTIVVHADPDDLGKGGHELSKTTGNAGARLGCGVIGI 150          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC_ASHGO (Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN=SOD1 PE=3 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 2.424e-33
Identity = 75/153 (49.02%), Postives = 96/153 (62.75%), Query Frame = 3
Query:  189 VKAVAYVISKWGPKGILHFKQEGDGP-TTIKGTLYYLSQGA-HGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 641
            VKAVA +    G  G++HF+QE D   TTI   +        HGFHIH +GD+ + C S+G HFNPF+K HG PED  RH GD+GN+    +G A  +   K  LI + GP SI+GR+VV+H   DDLG+ GN  S K GNAG + ACGVIG+
Sbjct:    2 VKAVAVLKGDAGVSGVVHFEQEADAAVTTISWNITGFEPNTEHGFHIHEFGDVTNGCTSSGSHFNPFKKTHGSPEDENRHVGDMGNVLADANGVAVGSA--KDPLIKIFGPTSILGRTVVVHAGKDDLGRGGNEESLKTGNAGPRPACGVIGI 152          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC_DROWI (Superoxide dismutase [Cu-Zn] OS=Drosophila willistoni GN=Sod PE=3 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 3.166e-33
Identity = 76/152 (50.00%), Postives = 93/152 (61.18%), Query Frame = 3
Query:  189 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 641
            VKAV  +      KG + F+QE +G P  + G +  L +G HGFH+H +GD  + C S+G HFNP  K HG P D  RH GDLGNI     G   +NI D    I LVG NSIIGR+VV+H   DDLGK G+  SK  GNAG +I CGVIG+
Sbjct:    3 VKAVCVI--NGDAKGTVFFEQEDNGAPVKVTGEVTGLGKGLHGFHVHEFGDNTNGCMSSGPHFNPHSKEHGAPGDENRHLGDLGNIEASGSGPTAVNITDSK--ITLVGANSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGCGVIGI 150          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC_CAEEL (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-1 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.571e-32
Identity = 73/137 (53.28%), Postives = 90/137 (65.69%), Query Frame = 3
Query:  246 KQEGDGPTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGK-VGN--YHSKKNGNAGDKIACGVIGLQA 647
            K E D    I+G +  L+ G HGFH+H YGD  + C S G HFNPF K HGGP+  IRH GDLGN+  G DG AKI + D   L+ L GPN+++GRS+V+H   DDLG+ VG+    SKK GNAG + ACGVI L A
Sbjct:   45 KSEND-QAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTD--TLVTLYGPNTVVGRSMVVHAGQDDLGEGVGDKAEESKKTGNAGARAACGVIALAA 178          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC_DROSI (Superoxide dismutase [Cu-Zn] OS=Drosophila simulans GN=Sod PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.052e-32
Identity = 74/152 (48.68%), Postives = 94/152 (61.84%), Query Frame = 3
Query:  189 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 641
            VKAV  +      KG + F+QE  G P  + G +  L++G HGFH+H +GD  + C S+G HFNP+ K HG P D  RH GDLGNI    D   K+NI D    I L G +SIIGR+VV+H   DDLG+ G+  SK  GNAG +I CGVIG+
Sbjct:    3 VKAVCVI--NGDAKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSK--ITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150          
BLAST of CV884566 vs. ExPASy Swiss-Prot
Match: SODC_DROSE (Superoxide dismutase [Cu-Zn] OS=Drosophila sechellia GN=Sod PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.052e-32
Identity = 74/152 (48.68%), Postives = 94/152 (61.84%), Query Frame = 3
Query:  189 VKAVAYVISKWGPKGILHFKQEGDG-PTTIKGTLYYLSQGAHGFHIHVYGDMAHFCQSTGDHFNPFRKHHGGPEDWIRHAGDLGNIYVGFDGKAKINIVDKHKLIPLVGPNSIIGRSVVIHDKHDDLGKVGNYHSKKNGNAGDKIACGVIGL 641
            VKAV  +      KG + F+QE  G P  + G +  L++G HGFH+H +GD  + C S+G HFNP+ K HG P D  RH GDLGNI    D   K+NI D    I L G +SIIGR+VV+H   DDLG+ G+  SK  GNAG +I CGVIG+
Sbjct:    3 VKAVCVI--NGDAKGTVFFEQESSGTPVKVSGEVCGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPYGKEHGAPVDENRHLGDLGNIEATGDCPTKVNITDSK--ITLFGADSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGCGVIGI 150          
The following BLAST results are available for this feature:
BLAST of CV884566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
SODC_CAPHI4.885e-3448.67Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]
SODE_ONCVO6.380e-3450.00Extracellular superoxide dismutase [Cu-Zn] OS=Onch... [more]
SODC_SHEEP1.421e-3348.00Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1... [more]
SODC_CEREL1.856e-3347.33Superoxide dismutase [Cu-Zn] OS=Cervus elaphus GN=... [more]
SODC_CERCA1.856e-3348.03Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]
SODC_ASHGO2.424e-3349.02Superoxide dismutase [Cu-Zn] OS=Ashbya gossypii GN... [more]
SODC_DROWI3.166e-3350.00Superoxide dismutase [Cu-Zn] OS=Drosophila willist... [more]
SODC_CAEEL1.571e-3253.28Superoxide dismutase [Cu-Zn] OS=Caenorhabditis ele... [more]
SODC_DROSI2.052e-3248.68Superoxide dismutase [Cu-Zn] OS=Drosophila simulan... [more]
SODC_DROSE2.052e-3248.68Superoxide dismutase [Cu-Zn] OS=Drosophila sechell... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_008C06_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_008_T3_C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884566 ID=CV884566; Name=CV884566; organism=Citrus sinensis; type=EST; length=774bp
CTTCAATCAAGTTGGTAGCCCTTTTAGCTGTTTTATTCTGTAAGAGTCTT
TAATTTCAACTGGAATCATAAGAGTTATAGTTTGTTAGCCAATTACTTAG
TAATCAGACAATTGAATGTTAATTCATGGCTAGCTGCTGCATGCGCGCAG
GTTTTGTCAATGCAACCAAATCAAGAGGAGTCCCAACGGTGAAAGCAGTT
GCTTATGTTATTAGCAAATGGGGTCCCAAGGGAATTCTCCATTTTAAACA
GGAAGGAGATGGCCCAACAACTATAAAGGGGACACTCTATTACCTTTCGC
AGGGTGCTCACGGATTTCATATACACGTCTACGGGGACATGGCCCATTTC
TGCCAGTCAACTGGCGATCACTTTAACCCATTTCGCAAACATCATGGTGG
CCCAGAGGATTGGATTCGTCATGCCGGTGATTTAGGAAATATCTATGTTG
GTTTTGATGGTAAAGCCAAGATCAACATTGTTGACAAGCATAAGCTGATT
CCTCTTGTTGGGCCAAATTCCATTATCGGAAGATCTGTCGTGATACACGA
CAAGCATGATGATCTTGGCAAGGTTGGAAATTACCACAGCAAAAAGAATG
GAAATGCTGGTGACAAAATAGCTTGTGGCGTCATTGGTCTCCAAGCATGA
ATGGTCTCGGTTTGGACTCTATATTATAAATACTTTATCTGATGTTGAAT
AAAGTTTAGTTTAATATGCTTGAGAGTGACTTGATAAGAATGTTATCTGG
AATAAGATCAGCTAAAACTTTTGT
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