CV884484

Overview
NameCV884484
Unique NameCV884484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.738e-58
Identity = 113/178 (63.48%), Postives = 137/178 (76.97%), Query Frame = -3
Query:  253 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERL 786
            L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K              R+YRE+KKIDRHMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K K +R+    RREERL
Sbjct:    4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARK----RREERL 177          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19_DANRE (60S ribosomal protein L19 OS=Danio rerio GN=rpl19 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 4.280e-57
Identity = 107/177 (60.45%), Postives = 135/177 (76.27%), Query Frame = -3
Query:  256 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 786
            L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K              R+YREAKKIDRHMYH +Y++ KGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R K + +R+R+  R++ +
Sbjct:    4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGVGKRKGTANARMPEKLCWMRRMRILRRLLRRYREAKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRTKTREARKRREERQQAK 180          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19_ICTPU (60S ribosomal protein L19 OS=Ictalurus punctatus GN=rpl19 PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.301e-57
Identity = 110/178 (61.80%), Postives = 136/178 (76.40%), Query Frame = -3
Query:  253 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERL 786
            L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG II+KP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K              R+YRE+KKIDRHMYH +Y++ KGNVFKNKR+LME IHK KA++AR+K LSDQ EA+R+K + +R+    RREERL
Sbjct:    4 LRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQAIRKLVKDGLIIKKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLCWMRRMRILRRLLRRYRESKKIDRHMYHSLYLRAKGNVFKNKRILMEHIHKLKADRARKKLLSDQAEARRSKTREARK----RREERL 177          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.522e-54
Identity = 101/174 (58.05%), Postives = 131/174 (75.29%), Query Frame = -3
Query:  268 ALKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIAR 789
            +LKLQKRL+AS+LKCG+G+VW+DPNE+ +++MANSR N+R+L+  GFI+RKP  +HSRSRAR    AKR GRH G G R GTREARLP+K              +KYREAKKID+H Y ++Y+K KGNVFKNKR L+E I KSK EK REK + DQ +A+R KNK+ ++R+ A+
Sbjct:    3 SLKLQKRLAASILKCGKGRVWIDPNEIADVAMANSRDNVRRLIATGFIMRKPVVVHSRSRAREHNAAKRLGRHRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKYREAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQAQARRNKNKSIKDRRAAK 176          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19_CAEEL (60S ribosomal protein L19 OS=Caenorhabditis elegans GN=rpl-19 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.871e-53
Identity = 103/182 (56.59%), Postives = 135/182 (74.18%), Query Frame = -3
Query:  253 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASR----ERKIARREERL 786
            L+LQKRL+++VLKCG+ +VWLDPNEV+EIS ANSRQ+IR+LV DG IIRKP  +HSR RAR  +EA+RKGRH+GYGKR+GT  AR+P K              R+YR+AKK+D+H+YH++Y++ KGN FKNK+ L+E I K K E  R K L+DQ +A+R KNK SR    ER++ +R E L
Sbjct:    4 LRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKNKESRKRREERQVVKRAELL 185          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19B_SCHPO (60S ribosomal protein L19-B OS=Schizosaccharomyces pombe GN=rpl19b PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.430e-52
Identity = 100/177 (56.50%), Postives = 131/177 (74.01%), Query Frame = -3
Query:  256 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 786
            L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQNIRKLVKDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+               RKYRE+ KID+H+YH +Y++ KGN FK+KR L+E I ++KAE  R K + +Q +A+RA+ KA+R+R+    EE+
Sbjct:    4 LRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQRRAKAVEEK 180          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19A_SCHPO (60S ribosomal protein L19-A OS=Schizosaccharomyces pombe GN=rpl19a PE=1 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 4.146e-52
Identity = 98/177 (55.37%), Postives = 131/177 (74.01%), Query Frame = -3
Query:  256 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 786
            L+ QKRL+ASVLKCG+ KVW+DPNE++EIS ANSRQN+RKL+KDG +IRKP  +HSR R R+   AKR GRH+GYGKRKGT EAR+P+               RKYRE+ KID+H+YH +Y++ KGN FK+KR L+E I ++KAE  R K + +Q +A+RA+ KA+R+R+    EE+
Sbjct:    4 LRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQQDARRARAKAARQRRAKAVEEK 180          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19_YEAST (60S ribosomal protein L19 OS=Saccharomyces cerevisiae GN=RPL19A PE=1 SV=5)

HSP 1 Score: 192.971 bits (489), Expect = 1.630e-48
Identity = 94/177 (53.11%), Postives = 129/177 (72.88%), Query Frame = -3
Query:  256 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREER 786
            L+ QKRL+ASV+  G+ KVWLDPNE +EI+ ANSR  IRKLVK+G I++K   +HS+SR R   ++KR+GRHSGYGKRKGTREARLP++               KYR+A KID+H+YH +Y + KGN FK+KR L+E I ++KA+  REK L+++ EA+R KN+A+R+R+  R  E+
Sbjct:    4 LRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRAARDRRAQRVAEK 180          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19_PYRHO (50S ribosomal protein L19e OS=Pyrococcus horikoshii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.072e-27
Identity = 61/135 (45.19%), Postives = 87/135 (64.44%), Query Frame = -3
Query:  382 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVL 786
            LK+Q+R++A +LKCG  +VW+DP +V+E++ A +R++IR+L+K+G I +KP +  SR RAR   E K+KGRH G G RKG + AR+  K              RK +E KKIDR  Y  +Y++ KG  FKNK  L
Sbjct:    4 LKMQRRIAAELLKCGENRVWIDPEKVDEVASAITREDIRRLIKEGVIRKKPIEGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRRELRKLKEQKKIDRKTYRMLYIRAKGGQFKNKHQL 138          
BLAST of CV884484 vs. ExPASy Swiss-Prot
Match: RL19_PYRAB (50S ribosomal protein L19e OS=Pyrococcus abyssi GN=rpl19e PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.615e-27
Identity = 61/148 (41.22%), Postives = 90/148 (60.81%), Query Frame = -3
Query:  343 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKXXXXXXXXXXXXXXRKYREAKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAR 786
            LK+Q+R++A +LKCG  ++W+DP  V++++ A +R++IR+L+K+G I +KP K  SR RAR   E K+KGRH G G RKG + AR+  K              RK +E KKIDR  Y  +Y++ KG  FK+K  L   + +    K R
Sbjct:    4 LKMQRRVAAELLKCGENRIWIDPERVDDVASAITREDIRRLIKEGVIKKKPVKGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKEQKKIDRRTYRMLYIRAKGGQFKSKHQLYMFLEEHNLLKKR 151          
The following BLAST results are available for this feature:
BLAST of CV884484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL19_BOVIN1.738e-5863.4860S ribosomal protein L19 OS=Bos taurus GN=RPL19 P... [more]
RL19_DANRE4.280e-5760.4560S ribosomal protein L19 OS=Danio rerio GN=rpl19 ... [more]
RL19_ICTPU7.301e-5761.8060S ribosomal protein L19 OS=Ictalurus punctatus G... [more]
RL19_DICDI1.522e-5458.0560S ribosomal protein L19 OS=Dictyostelium discoid... [more]
RL19_CAEEL2.871e-5356.5960S ribosomal protein L19 OS=Caenorhabditis elegan... [more]
RL19B_SCHPO2.430e-5256.5060S ribosomal protein L19-B OS=Schizosaccharomyces... [more]
RL19A_SCHPO4.146e-5255.3760S ribosomal protein L19-A OS=Schizosaccharomyces... [more]
RL19_YEAST1.630e-4853.1160S ribosomal protein L19 OS=Saccharomyces cerevis... [more]
RL19_PYRHO2.072e-2745.1950S ribosomal protein L19e OS=Pyrococcus horikoshi... [more]
RL19_PYRAB4.615e-2741.2250S ribosomal protein L19e OS=Pyrococcus abyssi GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003G02_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884484 ID=CV884484; Name=CV884484; organism=Citrus sinensis; type=EST; length=791bp
TTTTTTGATTAGCAGTATTAAGAAACCTCCTTTCATCTGCAATATTTAAG
TAACAAGGTCCAAAAGAAACCAAAAAGAACATTCCTTTAACAAAACTGCT
CTGCCACAGTAACAGAGGACGCAAGCTACCTACGGTCAAAATCCTTCACT
GCTTTGTCAGGCGTTTTACTTCTTAGATTTTTTGGGTACCTCAGTTGACT
GAGATGCAGCAGCAGGTGGTGCGGTTGTTGGTGCTCCTCCAGGCCCCTGG
GCTAAACGTTCCTCCCTCCTAGCAATTTTCCTCTCCCTGCTTGCCTTGTT
CTTAGCCCGTTTAGCCTCAAACTGGTCAGACAAAGTTTTCTCCCTAGCCT
TCTCAGCCTTCGACTTGTGGATACTCTCCATCAAAACTCGCTTATTCTTA
AATACATTACCCTTAACCTTCATGTACATGTCATGATACATGTGTCTGTC
AATCTTCTTTGCTTCCCTGTACTTGCGGAGCAAGCGCCTGAGGACACGCA
TCCTTCTCATCCACAGGACTTTTGTAGGCAGCCTTGCTTCTCTTGTACCT
TTGCGCTTACCATATCCAGAGTGGCGACCCTTCCTCTTAGCTTCCTTCAT
GCGTCGAGCTCGTGAACGGGAGTGAATCTTGGTTGGTTTTCTGATGATAA
AGCCATCCTTGACCAGCTTCCTGATGTTCTGGCGTGAGTTGGCCATGGAT
ATTTCGTTGACTTCATTTGGATCAAGCCAGACCTTCCCTCTGCCACACTT
GAGCACGCTCGCTGAGAGCCGTTTTTGGAGCTTGAGTGCCT
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