CV884477

Overview
NameCV884477
Unique NameCV884477
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length898
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884477 vs. ExPASy Swiss-Prot
Match: ADH1_STRCA (Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH1 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.707e-31
Identity = 67/166 (40.36%), Postives = 92/166 (55.42%), Query Frame = 1
Query:    1 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVL 498
            V+ +F+ +C  C  C S K N C    +     +  D  +RF+ KGK ++H+   S+F+EYTV+H     K+ + APLEK+                 A +  GST  +FGLG VGLSV  G KA GASRIIGVD N +K  KAK  G T+ +NP D  +P+ +VL
Sbjct:   89 VIPLFVPQCGECSVCLSTKGNLCRKNDIGPASALMPDGTSRFTCKGKAIHHFAGTSTFTEYTVLHETAVAKIDAAAPLEKVCLIGCGFSTGYGAALQTAKVEPGSTCAVFGLGGVGLSVVMGCKAAGASRIIGVDINKDKFAKAKELGATDCVNPKDFTKPIHEVL 254          
BLAST of CV884477 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.230e-31
Identity = 70/166 (42.17%), Postives = 96/166 (57.83%), Query Frame = 1
Query:    1 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVL 498
            V+T+F+ +C  C  C + + N C         +M SD  +RF+ KGK +YH+   S+F EYTV+      K+ ++APLEK+               N A ++ GST  +FGLG VG SV  G KA GA+RIIGVD N EK +KA+  G TE LNP D  +P+Q+VL
Sbjct:   91 VITLFLPQCGECTSCLNSEGNFCIQFKQSETQLM-SDGTSRFTCKGKSIYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKVTPGSTCAVFGLGGVGSSVVMGCKAAGATRIIGVDVNKEKFKKARELGATECLNPQDLKKPIQEVL 255          
BLAST of CV884477 vs. ExPASy Swiss-Prot
Match: ADH1B_PANTR (Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH1B PE=2 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 2.230e-31
Identity = 69/166 (41.57%), Postives = 94/166 (56.63%), Query Frame = 1
Query:    1 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVL 498
            V+ +F  +C  CR CK+ +SN C    L        D   RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+               NVA ++ GST  +FGLG VGLS   G KA GA+RII VD N +K  KAK  G TE +NP D  +P+Q+VL
Sbjct:   90 VIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVL 255          
BLAST of CV884477 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.230e-31
Identity = 69/166 (41.57%), Postives = 94/166 (56.63%), Query Frame = 1
Query:    1 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVL 498
            V+ +F  +C  CR CK+ +SN C    L        D   RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+               NVA ++ GST  +FGLG VGLS   G KA GA+RII VD N +K  KAK  G TE +NP D  +P+Q+VL
Sbjct:   90 VIPLFTPQCGKCRVCKNPESNYCLKNDLGNPRGTLQDGTRRFTCRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVL 255          
BLAST of CV884477 vs. ExPASy Swiss-Prot
Match: ADH1_APTAU (Alcohol dehydrogenase 1 OS=Apteryx australis GN=ADH1 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.912e-31
Identity = 67/166 (40.36%), Postives = 92/166 (55.42%), Query Frame = 1
Query:    1 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVL 498
            V+ +F+ +C  C  C S K N C    +     +  D  TRF+ KGK ++H+   S+F+EYTVVH     K+++ APLEK+                 A +  GST  +FGLG VGLSV  G KA GASRII +D N +K  KAK  G T+ +NP D  +P+ +VL
Sbjct:   90 VIPLFVPQCGECSACLSTKGNLCSKNDIGSASGLMPDGTTRFTCKGKAIHHFIGTSTFTEYTVVHETAVAKIAAAAPLEKVCLIGCGFSTGYGAAVQTAKVEPGSTCAVFGLGGVGLSVVMGCKAAGASRIIAIDINKDKFAKAKELGATDCVNPKDFTKPIHEVL 255          
BLAST of CV884477 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.912e-31
Identity = 70/166 (42.17%), Postives = 94/166 (56.63%), Query Frame = 1
Query:    1 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVL 498
            V+ +F  +C  CR CK+ +SN C    L        D   RF+  GKP++H+  VS+FS+YTVV      K+ + +PLEK+                VA ++ GST  +FGLG VGLSV  G KA GA+RII VD N +K  KAK  G TE +NP D  +P+Q+VL
Sbjct:   90 VIPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTLQDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVL 255          
BLAST of CV884477 vs. ExPASy Swiss-Prot
Match: ADH1S_HORSE (Alcohol dehydrogenase S chain OS=Equus caballus PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 3.803e-31
Identity = 71/166 (42.77%), Postives = 97/166 (58.43%), Query Frame = 1
Query:    1 VLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVL 498
            V+ +FI +C  C  CK  + N C       RG M  D  +RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+                VA +++GST  +FGLG VGLSV  G KA GA+RIIGVD N +K  KAK  G TE +NP D  +P+Q+VL
Sbjct:   90 VIPLFIPQCGKCSVCKHPEGNLCLKNLSMPRGTMQ-DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVL 254          
BLAST of CV884477 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 3.803e-31
Identity = 71/167 (42.51%), Postives = 96/167 (57.49%), Query Frame = 1
Query:    1 VLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVL 498
            V+ +F  +C  CR CK+ +SN C    L   RG M  D   RF+  GKP++H+  +S+FS+YTVV      K+ + +PLEK+                VA ++ GST  +FGLG VGLS   G KA GA+RII VD N +K  KAK  G TE +NP D  +P+Q+VL
Sbjct:   90 VIPLFTPQCGKCRVCKNPESNYCFKNDLSNPRGTMQ-DGTRRFTCGGKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGPAVKVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVL 255          
BLAST of CV884477 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.803e-31
Identity = 72/167 (43.11%), Postives = 98/167 (58.68%), Query Frame = 1
Query:    1 VLTVFIGECKTCRQCKSDKSNTCEVLGLER-RGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVL 498
            V+ +F  +C  CR CK  + N C    L   RG M  D  +RF+ +GKP++H+   S+FS+YTVV      K+ + +PLEK+                VA +++GST  +FGLG VGLSV  G KA GA+RIIGVD N +K  KAK  G TE +NP D  +P+Q+VL
Sbjct:   90 VIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQ-DGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVL 255          
BLAST of CV884477 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 4.967e-31
Identity = 70/167 (41.92%), Postives = 98/167 (58.68%), Query Frame = 1
Query:    1 VLTVFIGECKTCRQCKSDKSNTC-EVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGSTVVIFGLGTVGLSVAQGAKARGASRIIGVDTNPEKCEKAKAFGVTEFLNPNDNNEPVQQVL 498
            V+ ++  ECKTC+ CKS K+N C  +   + +G+M  D  +RFS  G  + H+   S+FSEYTVV     V +  +APL+ +                 ADI +G +V +FGLG+VGL+V QGA  + A RI G+D NPEK   A +FG T+F+NPND   P+Q VL
Sbjct:   94 VIALYTPECKTCKFCKSGKTNLCGRIRTTQGKGLM-PDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGYGAATITADIKEGDSVAVFGLGSVGLAVIQGAVKKRAGRIFGIDVNPEKKNWAMSFGATDFINPNDLQSPIQDVL 259          
The following BLAST results are available for this feature:
BLAST of CV884477 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
ADH1_STRCA1.707e-3140.36Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH... [more]
ADH6_PONAB2.230e-3142.17Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
ADH1B_PANTR2.230e-3141.57Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH... [more]
ADH1B_HUMAN2.230e-3141.57Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]
ADH1_APTAU2.912e-3140.36Alcohol dehydrogenase 1 OS=Apteryx australis GN=AD... [more]
ADH1G_HUMAN2.912e-3142.17Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]
ADH1S_HORSE3.803e-3142.77Alcohol dehydrogenase S chain OS=Equus caballus PE... [more]
ADH1G_PAPHA3.803e-3142.51Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]
ADH1E_HORSE3.803e-3143.11Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
FADH2_SCHPO4.967e-3141.92Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003F11_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T3_F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884477 ID=CV884477; Name=CV884477; organism=Citrus sinensis; type=EST; length=898bp
GTGCTTACAGTATTTATTGGAGAATGCAAGACATGCAGACAGTGTAAATC
TGATAAAAGCAACACGTGTGAAGTTCTGGGATTGGAAAGGAGAGGTGTGA
TGCACAGTGATCAGCAGACACGCTTCTCAATTAAAGGAAAGCCTGTTTAT
CACTATTGTGCTGTTTCAAGTTTCAGTGAGTATACCGTGGTGCATTCTGG
ATGTGCTGTCAAAGTTAGCTCAATTGCACCACTTGAAAAAATATGCCTTC
TGAGTTGTGGACTATCTGCAGGTCTTGGAGCAGCGTGGAATGTGGCAGAT
ATATCAAAAGGATCAACTGTGGTGATTTTTGGTCTTGGAACTGTAGGCCT
TTCTGTTGCACAAGGTGCAAAAGCCAGAGGAGCGTCTAGAATTATTGGCG
TTGACACTAACCCTGAGAAATGTGAAAAAGCCAAAGCTTTTGGAGTTACA
GAGTTTCTCAACCCAAATGATAATAATGAACCTGTTCAACAGGTATTACC
ATTTAGTCTAGTTAGCAGCAACAGTTTAGCAACTTTTTAACAAAATAAAG
AAAAAATTTGTATGAGTACATAAGAAGTGCATTAGTGAGACACAAAGTGG
TTATCTCTACTTTTTAATCTAGTTCTTTTTCGCTCCCAAAAAACAAACAA
GGGACTACTCAGCCTTATCACCAGTGGTAATAAGAATTCAGATCCTATTG
AAGAAGCTATTTATAGTGTGTAATATGCAAGTATAACAAGGAAATGCAAA
CATGAGCTCTAATTTTGTGCCCTTCCATGTAGCATACTTGTGGAGACATG
CAATTGCAGACACACTGATGTGCTGATGCAATGCACACCTGCAATACATA
ATTTAATAGAATCCTGAAGTTTGATCAACATTCTGTGTTTATTAACAT
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