CV884476

Overview
NameCV884476
Unique NameCV884476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Library UCRCS04-UCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CV884476 vs. ExPASy Swiss-Prot
Match: MAO1_YERPA (NAD-dependent malic enzyme OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=sfcA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 84/221 (38.01%), Postives = 119/221 (53.85%), Query Frame = -2
Query:  179 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 841
            L+D +  +V  + D L H+       H    +LLD V+  KPT+LIG SG    FT+E+I  M S   +P+++ LSNPTS+ E   E+   W+ G A+ A+GSPF P  Y  K++   Q NN+YIFPG GLG++ SGA RV D ML+AAS ALA+        +G + P   +I+             A   GVA  +   + L K  E   + P YR+Y+
Sbjct:  348 LLDFQSKLVQ-KSDDLHHWNL-----HNDAISLLDVVRNAKPTVLIGVSGQPGLFTEELIREMHSHCARPIVMPLSNPTSRVEARPEDIINWTDGAALVATGSPFPPVSYKEKLYPIAQCNNSYIFPGIGLGVLASGASRVTDGMLMAASRALAESSPLARHGEGALLPNIDDIQAVSKAIAMRVGQAAQLQGVAI-VTSEEALSKAIEHNYWQPQYRSYK 561          
BLAST of CV884476 vs. ExPASy Swiss-Prot
Match: MAO1_YERP3 (NAD-dependent malic enzyme OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=sfcA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 84/221 (38.01%), Postives = 119/221 (53.85%), Query Frame = -2
Query:  179 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 841
            L+D +  +V  + D L H+       H    +LLD V+  KPT+LIG SG    FT+E+I  M S   +P+++ LSNPTS+ E   E+   W+ G A+ A+GSPF P  Y  K++   Q NN+YIFPG GLG++ SGA RV D ML+AAS ALA+        +G + P   +I+             A   GVA  +   + L K  E   + P YR+Y+
Sbjct:  348 LLDFQSKLVQ-KSDDLHHWNL-----HNDAISLLDVVRNAKPTVLIGVSGQPGLFTEELIREMHSHCARPIVMPLSNPTSRVEARPEDIINWTDGAALVATGSPFPPVSYKEKLYPIAQCNNSYIFPGIGLGVLASGASRVTDGMLMAASRALAESSPLARHGEGALLPNIDDIQAVSKAIAMRVGQAAQLQGVAI-VTSEEALSKAIEHNYWQPQYRSYK 561          
BLAST of CV884476 vs. ExPASy Swiss-Prot
Match: MAO1_VIBFM (NAD-dependent malic enzyme OS=Vibrio fischeri (strain MJ11) GN=sfcA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.188e-32
Identity = 79/201 (39.30%), Postives = 112/201 (55.72%), Query Frame = -2
Query:  179 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 781
            K W  E EP  +L+D ++  KPT+LIG SG    F+KEVI+ M    E+P++  LSNPTS+ E T  +   W+ G+A+ A+GSPFDP  +NG+ +   Q NN++IFPG GLG++   A RV D+ML+ +S ALA+         G + PP   I              A E G A  +   + L +  ES  + PVYR Y+
Sbjct:  360 KDWISE-EPNFSLVDVMRNAKPTVLIGVSGAPGLFSKEVIQEMHKHCERPIVFPLSNPTSRVEATPNDIIRWTNGQALVATGSPFDPVSHNGQTYPIAQCNNSFIFPGIGLGVLAIKATRVTDEMLMESSRALAECSPLAINGTGALLPPLEEIHSVSKRIAFAVAKKAIEQGHALEI-TDEALHQKIESYFWKPVYRRYK 558          
BLAST of CV884476 vs. ExPASy Swiss-Prot
Match: MAO1_PSYCK (NAD-dependent malic enzyme OS=Psychrobacter cryohalolentis (strain K5) GN=sfcA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.567e-31
Identity = 84/233 (36.05%), Postives = 125/233 (53.65%), Query Frame = -2
Query:  179 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNN--------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 853
            +++ +VD  GL+  S  + LQ F+ P   +   + +        L   VK  + T+L G SG    FT+EV+EA+ +  E P++L LSNPTS+ E T +E   WS+G+AI A+GSPF    + G+ +   Q NN+YIFPG GLG++ + A  + D+ML AAS+ALA    E     G I PP   IR             A E  +A  +   +NL +  ++  + P YR+YR
Sbjct:  326 RQVFMVDRYGLLTDSMTE-LQKFQTPLVQKESDIEHWDKSQKLGLAQVVKQARITVLFGVSGQKGLFTQEVVEALCANTEHPIVLPLSNPTSRVEATPQEVTNWSRGKAIVATGSPFPNTTFEGQSYEVSQCNNSYIFPGIGLGVLAARATGISDNMLTAASQALADISVEYEKAPGAILPPIKFIREISEKIAYAVALQAIEDKLALPV-TAENLERRLKANFWLPKYRDYR 556          
BLAST of CV884476 vs. ExPASy Swiss-Prot
Match: MAO1_PSYA2 (NAD-dependent malic enzyme OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=sfcA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.047e-31
Identity = 86/233 (36.91%), Postives = 124/233 (53.22%), Query Frame = -2
Query:  179 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNN--------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 853
            K++ +VD  GL+  S  + LQ F+ P   +   + +        L   VK  K T+L G SG    FT+EVIEA+    E P++L LSNPTS+ E T +E  +WS+G+AI A+GSPF    +  + F   Q NN+YIFPG GLG++ + A  + D+ML++AS+ALA    E     G I PP   IR             A E  +A  +   +NL +  ++  + P Y NYR
Sbjct:  326 KQVFMVDRYGLLTDSMTE-LQKFQAPLVQKESAIESWDKSQKLGLAQVVKQAKITVLFGVSGQKGLFTREVIEALCVNTEHPIVLPLSNPTSRVEATPQEVTSWSRGKAIVATGSPFPNTTFEDQSFEISQCNNSYIFPGIGLGVLAAHATGISDNMLMSASQALADISMEYEKAPGAILPPIKFIREISEKIAYAVALQAIEDKLALPV-TAENLERRLKANFWLPRYHNYR 556          
BLAST of CV884476 vs. ExPASy Swiss-Prot
Match: MAO1_SHISS (NAD-dependent malic enzyme OS=Shigella sonnei (strain Ss046) GN=sfcA PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.673e-31
Identity = 80/234 (34.19%), Postives = 130/234 (55.56%), Query Frame = -2
Query:  179 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNN---------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 853
            +K+ +VD  GL+ + +  +L  F+     + E +++         LLD V+ +KP ILIG SG    FT+E+I  M     +P+++ LSNPTS+ E T ++   W++G A+ A+GSPF+P  +  K++   Q NNA+IFPG GLG++ SGA R+ D+ML++ASE LA+        +GL+ P   +I+             A + GVA +    + L +  +   +   YR+YR
Sbjct:  330 QKVFMVDRFGLL-TDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIYPIAQCNNAFIFPGIGLGVIASGASRITDEMLMSASETLAQYSPLVLNGEGLVLPELKDIQKVSRAIAFAVGKMAQQQGVAVK-TSAEALQQAIDDNFWQAEYRDYR 561          
BLAST of CV884476 vs. ExPASy Swiss-Prot
Match: MAO1_SHIFL (NAD-dependent malic enzyme OS=Shigella flexneri GN=sfcA PE=3 SV=4)

HSP 1 Score: 135.961 bits (341), Expect = 2.673e-31
Identity = 80/234 (34.19%), Postives = 130/234 (55.56%), Query Frame = -2
Query:  179 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNN---------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 853
            +K+ +VD  GL+ + +  +L  F+     + E +++         LLD V+ +KP ILIG SG    FT+E+I  M     +P+++ LSNPTS+ E T ++   W++G A+ A+GSPF+P  +  K++   Q NNA+IFPG GLG++ SGA R+ D+ML++ASE LA+        +GL+ P   +I+             A + GVA +    + L +  +   +   YR+YR
Sbjct:  330 QKVFMVDRFGLL-TDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIYPIAQCNNAFIFPGIGLGVIASGASRITDEMLMSASETLAQYSPLVLNGEGLVLPELKDIQKVSRAIAFAVGKMAQQQGVAVK-TSAEALQQAIDDNFWQAEYRDYR 561          
BLAST of CV884476 vs. ExPASy Swiss-Prot
Match: MAO1_SHIF8 (NAD-dependent malic enzyme OS=Shigella flexneri serotype 5b (strain 8401) GN=sfcA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.673e-31
Identity = 80/234 (34.19%), Postives = 130/234 (55.56%), Query Frame = -2
Query:  179 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNN---------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 853
            +K+ +VD  GL+ + +  +L  F+     + E +++         LLD V+ +KP ILIG SG    FT+E+I  M     +P+++ LSNPTS+ E T ++   W++G A+ A+GSPF+P  +  K++   Q NNA+IFPG GLG++ SGA R+ D+ML++ASE LA+        +GL+ P   +I+             A + GVA +    + L +  +   +   YR+YR
Sbjct:  330 QKVFMVDRFGLL-TDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIYPIAQCNNAFIFPGIGLGVIASGASRITDEMLMSASETLAQYSPLVLNGEGLVLPELKDIQKVSRAIAFAVGKMAQQQGVAVK-TSAEALQQAIDDNFWQAEYRDYR 561          
BLAST of CV884476 vs. ExPASy Swiss-Prot
Match: MAO1_SHIBS (NAD-dependent malic enzyme OS=Shigella boydii serotype 4 (strain Sb227) GN=sfcA PE=3 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.673e-31
Identity = 80/234 (34.19%), Postives = 130/234 (55.56%), Query Frame = -2
Query:  179 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNN---------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 853
            +K+ +VD  GL+ + +  +L  F+     + E +++         LLD V+ +KP ILIG SG    FT+E+I  M     +P+++ LSNPTS+ E T ++   W++G A+ A+GSPF+P  +  K++   Q NNA+IFPG GLG++ SGA R+ D+ML++ASE LA+        +GL+ P   +I+             A + GVA +    + L +  +   +   YR+YR
Sbjct:  330 QKVFMVDRFGLL-TDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIYPIAQCNNAFIFPGIGLGVIASGASRITDEMLMSASETLAQYSPLVLNGEGLVLPELKDIQKVSRAIAFAVGKMAQQQGVAVK-TSAEALQQAIDDNFWQAEYRDYR 561          
BLAST of CV884476 vs. ExPASy Swiss-Prot
Match: MAO1_SHIB3 (NAD-dependent malic enzyme OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=sfcA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.673e-31
Identity = 80/234 (34.19%), Postives = 130/234 (55.56%), Query Frame = -2
Query:  179 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNN---------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXXXXAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 853
            +K+ +VD  GL+ + +  +L  F+     + E +++         LLD V+ +KP ILIG SG    FT+E+I  M     +P+++ LSNPTS+ E T ++   W++G A+ A+GSPF+P  +  K++   Q NNA+IFPG GLG++ SGA R+ D+ML++ASE LA+        +GL+ P   +I+             A + GVA +    + L +  +   +   YR+YR
Sbjct:  330 QKVFMVDRFGLL-TDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQTGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVVWKDKIYPIAQCNNAFIFPGIGLGVIASGASRITDEMLMSASETLAQYSPLVLNGEGLVLPELKDIQKVSRAIAFAVGKMAQQQGVAVK-TSAEALQQAIDDNFWQAEYRDYR 561          
The following BLAST results are available for this feature:
BLAST of CV884476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
MAO1_YERPA9.188e-3238.01NAD-dependent malic enzyme OS=Yersinia pestis bv. ... [more]
MAO1_YERP39.188e-3238.01NAD-dependent malic enzyme OS=Yersinia pseudotuber... [more]
MAO1_VIBFM9.188e-3239.30NAD-dependent malic enzyme OS=Vibrio fischeri (str... [more]
MAO1_PSYCK1.567e-3136.05NAD-dependent malic enzyme OS=Psychrobacter cryoha... [more]
MAO1_PSYA22.047e-3136.91NAD-dependent malic enzyme OS=Psychrobacter arctic... [more]
MAO1_SHISS2.673e-3134.19NAD-dependent malic enzyme OS=Shigella sonnei (str... [more]
MAO1_SHIFL2.673e-3134.19NAD-dependent malic enzyme OS=Shigella flexneri GN... [more]
MAO1_SHIF82.673e-3134.19NAD-dependent malic enzyme OS=Shigella flexneri se... [more]
MAO1_SHIBS2.673e-3134.19NAD-dependent malic enzyme OS=Shigella boydii sero... [more]
MAO1_SHIB32.673e-3134.19NAD-dependent malic enzyme OS=Shigella boydii sero... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_2_003F10_T7 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cDNA clone UCRCS04_003_T7_F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CV884476 ID=CV884476; Name=CV884476; organism=Citrus sinensis; type=EST; length=854bp
TTTTTTTTTTTTTTTTTCACCATGTAGGCAGTGGTCCAACACCTTCATTT
GATAAGTACACATATACAGCAATACTTACACAAGTACAAAAGCCACCATA
ACACACCAAAACAAGTTATTTGACATTATTTTTGCTTAAAGACACTCAGC
GGAGACAGAAATTTTGGCAGAACATTTAACGATAGTTTCGGTAGACAGGG
GTATACATGCAACTTTCAGCGCACTTCACTAGATTCTGAGGTCGAGGGAG
ACGCGTAGCCACGCCTAGTTCATATGCCTTAGCAGCAACATTAGCAGCTA
TATTGGCTGAAATTTTTCTAATATTAGAAAATGGTGGGTAGATCAATCCC
TTCTCAAAGTTCTCTTCTGTCACTTGTTTTGCCAAGGCTTCCGAGGCTGC
CAGAAGCATGTCGTCATGTACCCGAATTGCTCCAGAGATGACCAAACCCA
AACCAAATCCAGGGAAGATGTAAGCATTGTTGGCCTGGCCAGGAACAAAA
ACTTTTCCATTGTATTCAAAAGGATCAAATGGACTTCCACTAGCGAAAAT
TGCACGACCCTTACTCCAAGTGTAAGCTTCTTCAGCTGTACATTCTGACT
GTGAGGTTGGGTTGGAGAGAGCCAGGATGAGAGGTTTCTCATTGAAGGAG
GCCATGGCCTCGATTACTTCTTTTGTAAAAGTTCTTCCAACTCCAGATGA
TCCAATCAAAATTGTTGGCTTGATTACCTTGACAGCATCTAAGAGATTGT
TGACAGGCTCATGTTCATGAGCCCAAGGCTTCTTGAAGTGTTGAAGTGAA
TCTTTCCGGGAGCTGACTATCAGTCCCTTTGAGTCTACAAGACATATCTT
CTTC
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